HEADER HYDROLASE 12-NOV-20 7AYJ TITLE METALLO BETA-LACTAMSE VIM-1 WITH A SULFAMOYL INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE VIM-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B CARBAPENEMASE VIM-1,METALLO-BETA-LACTAMASE,METALLO- COMPND 5 BETA-LACTAMASE VIM-1,METALLOBETA-LACTAMASE,SUBCLASS B1 METALLO-BETA- COMPND 6 LACTAMASE VIM-1,VIM-1,VIM-1 METALLO-BETA-LACTAMASE,VIM-1 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM, BLAVIM-1, CAZ10_38240, CAZ10_38245; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS VIM1, METALLO BETA LACTAMSE, INHIBITION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.M.FARLEY,I.ERMOLOVICH,K.CALVOPINA,P.RABE,J.BREM,C.J.SCHOFIELD REVDAT 5 31-JAN-24 7AYJ 1 REMARK REVDAT 4 23-JUN-21 7AYJ 1 JRNL REVDAT 3 02-JUN-21 7AYJ 1 JRNL REVDAT 2 26-MAY-21 7AYJ 1 JRNL REVDAT 1 12-MAY-21 7AYJ 0 JRNL AUTH A.J.M.FARLEY,Y.ERMOLOVICH,K.CALVOPINA,P.RABE,T.PANDUWAWALA, JRNL AUTH 2 J.BREM,F.BJORKLING,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS OF METALLO-BETA-LACTAMASE INHIBITION BY N JRNL TITL 2 -SULFAMOYLPYRROLE-2-CARBOXYLATES. JRNL REF ACS INFECT DIS. V. 7 1809 2021 JRNL REFN ESSN 2373-8227 JRNL PMID 34003651 JRNL DOI 10.1021/ACSINFECDIS.1C00104 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 64036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 3065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1900 - 3.3900 1.00 2882 103 0.1511 0.1485 REMARK 3 2 3.3900 - 2.6900 1.00 2809 135 0.1615 0.2051 REMARK 3 3 2.6900 - 2.3500 1.00 2804 133 0.1603 0.2049 REMARK 3 4 2.3500 - 2.1400 1.00 2757 165 0.1756 0.1973 REMARK 3 5 2.1400 - 1.9800 1.00 2786 136 0.1563 0.1869 REMARK 3 6 1.9800 - 1.8700 1.00 2789 146 0.1673 0.1790 REMARK 3 7 1.8700 - 1.7700 1.00 2759 147 0.1677 0.1753 REMARK 3 8 1.7700 - 1.6900 1.00 2758 170 0.1602 0.1967 REMARK 3 9 1.6900 - 1.6300 1.00 2793 117 0.1681 0.2090 REMARK 3 10 1.6300 - 1.5700 1.00 2770 126 0.1700 0.1923 REMARK 3 11 1.5700 - 1.5200 1.00 2788 142 0.1805 0.2158 REMARK 3 12 1.5200 - 1.4800 1.00 2753 148 0.1799 0.1982 REMARK 3 13 1.4800 - 1.4400 1.00 2737 161 0.1830 0.2067 REMARK 3 14 1.4400 - 1.4100 1.00 2790 140 0.1932 0.2054 REMARK 3 15 1.4100 - 1.3700 1.00 2789 117 0.2000 0.2183 REMARK 3 16 1.3700 - 1.3500 1.00 2769 143 0.2138 0.2426 REMARK 3 17 1.3500 - 1.3200 1.00 2798 122 0.2369 0.2734 REMARK 3 18 1.3200 - 1.2900 1.00 2746 153 0.2379 0.2976 REMARK 3 19 1.2900 - 1.2700 1.00 2750 167 0.2382 0.2565 REMARK 3 20 1.2700 - 1.2500 1.00 2793 119 0.2287 0.2182 REMARK 3 21 1.2500 - 1.2300 0.99 2743 148 0.2463 0.2743 REMARK 3 22 1.2300 - 1.2100 0.94 2608 127 0.2582 0.2651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7999 -10.4779 11.8638 REMARK 3 T TENSOR REMARK 3 T11: 0.1706 T22: 0.1273 REMARK 3 T33: 0.2597 T12: 0.0166 REMARK 3 T13: 0.0626 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.1340 L22: 3.6281 REMARK 3 L33: 3.6246 L12: -0.2607 REMARK 3 L13: -0.4267 L23: -0.2388 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: 0.1266 S13: -0.3279 REMARK 3 S21: -0.2922 S22: -0.0758 S23: -0.5538 REMARK 3 S31: 0.4976 S32: 0.2302 S33: 0.1351 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4417 -7.8662 15.2989 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.0818 REMARK 3 T33: 0.0711 T12: -0.0064 REMARK 3 T13: 0.0094 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.9542 L22: 7.4601 REMARK 3 L33: 2.7230 L12: 1.5569 REMARK 3 L13: 0.1807 L23: 0.8093 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.0278 S13: -0.0706 REMARK 3 S21: -0.1519 S22: -0.0005 S23: -0.1015 REMARK 3 S31: 0.1742 S32: -0.0577 S33: 0.0091 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3623 -4.4587 24.4074 REMARK 3 T TENSOR REMARK 3 T11: 0.0986 T22: 0.1009 REMARK 3 T33: 0.0938 T12: -0.0010 REMARK 3 T13: -0.0055 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.8608 L22: 1.4407 REMARK 3 L33: 1.5245 L12: -0.6106 REMARK 3 L13: -0.3840 L23: -0.1038 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: -0.2403 S13: -0.0231 REMARK 3 S21: 0.0785 S22: 0.0723 S23: -0.1152 REMARK 3 S31: 0.0683 S32: 0.0998 S33: 0.0021 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0769 -4.5022 25.9642 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.1185 REMARK 3 T33: 0.0844 T12: -0.0073 REMARK 3 T13: 0.0354 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 5.8288 L22: 6.4836 REMARK 3 L33: 4.7208 L12: -0.5568 REMARK 3 L13: 1.2100 L23: -1.4885 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.1328 S13: -0.0897 REMARK 3 S21: 0.0173 S22: 0.0419 S23: 0.2993 REMARK 3 S31: 0.2066 S32: -0.2351 S33: -0.0690 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1139 9.3411 17.5839 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.0963 REMARK 3 T33: 0.1567 T12: 0.0282 REMARK 3 T13: -0.0001 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 5.4897 L22: 2.5672 REMARK 3 L33: 4.8760 L12: -1.8252 REMARK 3 L13: 1.1462 L23: -0.0082 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0085 S13: 0.3613 REMARK 3 S21: -0.0967 S22: 0.0082 S23: -0.0065 REMARK 3 S31: -0.2720 S32: -0.2765 S33: 0.0118 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0646 0.0520 7.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.1524 REMARK 3 T33: 0.0852 T12: -0.0237 REMARK 3 T13: -0.0083 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.7929 L22: 1.6920 REMARK 3 L33: 2.5895 L12: -0.7277 REMARK 3 L13: -0.3219 L23: 0.2404 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.2934 S13: 0.0018 REMARK 3 S21: -0.2028 S22: -0.0439 S23: 0.0710 REMARK 3 S31: 0.0483 S32: -0.3156 S33: 0.0371 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9477 -3.3755 -1.6645 REMARK 3 T TENSOR REMARK 3 T11: 0.2036 T22: 0.3269 REMARK 3 T33: 0.1476 T12: -0.0860 REMARK 3 T13: 0.0281 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 7.8356 L22: 1.9286 REMARK 3 L33: 4.3415 L12: 0.6639 REMARK 3 L13: 1.9752 L23: -0.3760 REMARK 3 S TENSOR REMARK 3 S11: -0.1521 S12: 0.6844 S13: -0.3080 REMARK 3 S21: -0.1876 S22: 0.0360 S23: 0.2220 REMARK 3 S31: 0.3399 S32: -0.7663 S33: 0.0633 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ZN COORDINATING CYS IS PARTIALLY REMARK 3 OXIDIZED (25 %). THE MODEL CONTAINS CYS AS WELL AS IT'S OXIDIZED REMARK 3 ANALOGUE 3-SULFINOALANINE (CSD) IN A RATIO CYS:CSD 0.75:0.25 REMARK 3 SUMMING THE OCCUPANCY TO 1.000. REMARK 4 REMARK 4 7AYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 40.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.62800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 2.4 M AMMONIUM REMARK 280 PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 PRO A 29 REMARK 465 SER A 30 REMARK 465 ARG A 140 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 465 LYS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 45 NE CZ NH1 NH2 REMARK 470 LYS A 228 CD CE NZ REMARK 470 GLU A 232 CD OE1 OE2 REMARK 470 LYS A 257 NZ REMARK 470 LYS A 260 CE NZ REMARK 470 ASN A 261 CG OD1 ND2 REMARK 470 ARG A 262 C O CB CG CD NE CZ REMARK 470 ARG A 262 NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 414 O HOH A 617 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 41 151.85 -47.19 REMARK 500 ASP A 84 144.79 73.28 REMARK 500 TRP A 87 68.81 70.10 REMARK 500 ALA A 178 -106.57 -149.94 REMARK 500 ASN A 261 45.97 -84.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 99.5 REMARK 620 3 HIS A 179 NE2 104.9 106.3 REMARK 620 4 S9N A 303 N1 110.0 121.6 112.6 REMARK 620 5 S9N A 303 S 139.8 95.4 106.3 33.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 96.9 REMARK 620 3 HIS A 240 NE2 78.5 105.0 REMARK 620 4 S9N A 303 O1 161.6 101.4 95.0 REMARK 620 5 S9N A 303 N1 80.3 115.0 136.5 93.3 REMARK 620 N 1 2 3 4 DBREF 7AYJ A 21 266 UNP Q9XAY4 Q9XAY4_PSEAI 21 266 SEQADV 7AYJ LYS A 267 UNP Q9XAY4 EXPRESSION TAG SEQADV 7AYJ HIS A 268 UNP Q9XAY4 EXPRESSION TAG SEQADV 7AYJ HIS A 269 UNP Q9XAY4 EXPRESSION TAG SEQADV 7AYJ HIS A 270 UNP Q9XAY4 EXPRESSION TAG SEQADV 7AYJ HIS A 271 UNP Q9XAY4 EXPRESSION TAG SEQADV 7AYJ HIS A 272 UNP Q9XAY4 EXPRESSION TAG SEQADV 7AYJ HIS A 273 UNP Q9XAY4 EXPRESSION TAG SEQRES 1 A 253 SER PRO LEU ALA HIS SER GLY GLU PRO SER GLY GLU TYR SEQRES 2 A 253 PRO THR VAL ASN GLU ILE PRO VAL GLY GLU VAL ARG LEU SEQRES 3 A 253 TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE ALA THR SEQRES 4 A 253 GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN GLY LEU SEQRES 5 A 253 ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE ASP THR SEQRES 6 A 253 ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU ALA GLU SEQRES 7 A 253 ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG ALA VAL SEQRES 8 A 253 SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY VAL ASP SEQRES 9 A 253 VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SER PRO SEQRES 10 A 253 SER THR ARG ARG LEU ALA GLU ALA GLU GLY ASN GLU ILE SEQRES 11 A 253 PRO THR HIS SER LEU GLU GLY LEU SER SER SER GLY ASP SEQRES 12 A 253 ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR PRO GLY SEQRES 13 A 253 ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR VAL PRO SEQRES 14 A 253 SER ALA ASN VAL LEU TYR GLY GLY CSD ALA VAL HIS GLU SEQRES 15 A 253 LEU SER SER THR SER ALA GLY ASN VAL ALA ASP ALA ASP SEQRES 16 A 253 LEU ALA GLU TRP PRO THR SER VAL GLU ARG ILE GLN LYS SEQRES 17 A 253 HIS TYR PRO GLU ALA GLU VAL VAL ILE PRO GLY HIS GLY SEQRES 18 A 253 LEU PRO GLY GLY LEU ASP LEU LEU GLN HIS THR ALA ASN SEQRES 19 A 253 VAL VAL LYS ALA HIS LYS ASN ARG SER VAL ALA GLU LYS SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS MODRES 7AYJ CSD A 198 CYS MODIFIED RESIDUE HET CSD A 198 11 HET ZN A 301 1 HET ZN A 302 1 HET S9N A 303 28 HETNAM CSD 3-SULFINOALANINE HETNAM ZN ZINC ION HETNAM S9N 3-(4-FLUOROPHENYL)-1-SULFAMOYL-PYRROLE-2-CARBOXYLIC HETNAM 2 S9N ACID HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 ZN 2(ZN 2+) FORMUL 4 S9N C11 H9 F N2 O4 S FORMUL 5 HOH *270(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 138 THR A 139 5 2 HELIX 6 AA6 ARG A 141 ARG A 141 5 1 HELIX 7 AA7 LEU A 142 GLY A 147 1 6 HELIX 8 AA8 CSD A 198 VAL A 200 5 3 HELIX 9 AA9 GLU A 218 TYR A 230 1 13 HELIX 10 AB1 LEU A 246 ASN A 261 1 16 SHEET 1 AA1 7 VAL A 44 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ILE A 73 N TRP A 54 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O ALA A 132 N THR A 108 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O TYR A 187 N GLU A 171 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 VAL A 235 PRO A 238 1 O VAL A 235 N LEU A 194 LINK C GLY A 197 N ACSD A 198 1555 1555 1.32 LINK C ACSD A 198 N ALA A 199 1555 1555 1.33 LINK NE2 HIS A 114 ZN ZN A 301 1555 1555 2.18 LINK ND1 HIS A 116 ZN ZN A 301 1555 1555 2.07 LINK OD2 ASP A 118 ZN B ZN A 302 1555 1555 2.56 LINK NE2 HIS A 179 ZN ZN A 301 1555 1555 2.05 LINK SG BCYS A 198 ZN B ZN A 302 1555 1555 2.22 LINK NE2BHIS A 240 ZN B ZN A 302 1555 1555 2.13 LINK ZN ZN A 301 N1 BS9N A 303 1555 1555 2.16 LINK ZN ZN A 301 S BS9N A 303 1555 1555 2.93 LINK ZN B ZN A 302 O1 BS9N A 303 1555 1555 2.05 LINK ZN B ZN A 302 N1 BS9N A 303 1555 1555 1.95 CRYST1 39.533 67.430 40.267 90.00 93.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025296 0.000000 0.001551 0.00000 SCALE2 0.000000 0.014830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024881 0.00000