HEADER ISOMERASE 16-NOV-20 7AZ3 TITLE PERDEUTERATED E65Q-TIM COMPLEXED WITH 2-PHOSPHOGLYCOLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TIM,TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DA1; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOMERASE, GLYCOLYSIS, TIM, TRIOSEPHOSPHATE ISOMERASE, TRANSITION KEYWDS 2 STATE, PERDEUTERATION EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR V.KELPSAS,O.CALDARARU,C.VON WACHENFELDT,E.OKSANEN REVDAT 1 28-JUL-21 7AZ3 0 JRNL AUTH V.KELPSAS,O.CALDARARU,M.P.BLAKELEY,N.COQUELLE,R.K.WIERENGA, JRNL AUTH 2 U.RYDE,C.VON WACHENFELDT,E.OKSANEN JRNL TITL NEUTRON STRUCTURES OF LEISHMANIA MEXICANA TRIOSEPHOSPHATE JRNL TITL 2 ISOMERASE IN COMPLEX WITH REACTION-INTERMEDIATE MIMICS SHED JRNL TITL 3 LIGHT ON THE PROTON-SHUTTLING STEPS. JRNL REF IUCRJ V. 8 633 2021 JRNL REFN ESSN 2052-2525 JRNL PMID 34258011 JRNL DOI 10.1107/S2052252521004619 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 95574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3325 - 2.7403 0.99 6798 146 0.1189 0.1253 REMARK 3 2 2.7403 - 2.1755 1.00 6737 144 0.1232 0.1279 REMARK 3 3 2.1755 - 1.9006 1.00 6739 143 0.1205 0.1389 REMARK 3 4 1.9006 - 1.7268 1.00 6713 144 0.1323 0.1671 REMARK 3 5 1.7268 - 1.6031 1.00 6693 142 0.1458 0.1410 REMARK 3 6 1.6031 - 1.5086 1.00 6710 144 0.1542 0.1857 REMARK 3 7 1.5086 - 1.4331 1.00 6702 143 0.1583 0.1649 REMARK 3 8 1.4331 - 1.3707 1.00 6705 143 0.1707 0.1878 REMARK 3 9 1.3707 - 1.3179 1.00 6665 142 0.1872 0.2114 REMARK 3 10 1.3179 - 1.2724 1.00 6646 142 0.1987 0.2314 REMARK 3 11 1.2724 - 1.2326 1.00 6689 143 0.2082 0.2294 REMARK 3 12 1.2326 - 1.1974 1.00 6657 142 0.2175 0.2418 REMARK 3 13 1.1974 - 1.1659 0.99 6615 141 0.2228 0.2317 REMARK 3 14 1.1659 - 1.1500 0.97 6507 139 0.2498 0.2544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4227 REMARK 3 ANGLE : 1.223 7408 REMARK 3 CHIRALITY : 0.091 332 REMARK 3 PLANARITY : 0.007 655 REMARK 3 DIHEDRAL : 18.049 1100 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 25544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.090 REMARK 3 FREE R VALUE TEST SET COUNT : 533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3961 - 2.6981 0.97 6991 149 0.1656 0.2028 REMARK 3 2 2.6981 - 2.1418 0.91 6437 140 0.1809 0.2078 REMARK 3 3 2.1418 - 1.8711 0.85 5982 126 0.2027 0.2712 REMARK 3 4 1.7610 - 1.7000 0.79 5601 118 0.2822 0.3465 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292110109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95584 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 45.674 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VXN REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 28-MAR-18 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : 5.40 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : LADI III REMARK 230 WAVELENGTH OR RANGE (A) : 2.7-3.5 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 230 INTENSITY-INTEGRATION SOFTWARE : LAUEGEN 3.25, XDS REMARK 230 DATA SCALING SOFTWARE : XSCALE, SCALA REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 25565 REMARK 230 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 230 RESOLUTION RANGE LOW (A) : 40.000 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 230 DATA REDUNDANCY : 6.600 REMARK 230 R MERGE (I) : NULL REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 13.3000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 230 COMPLETENESS FOR SHELL (%) : NULL REMARK 230 DATA REDUNDANCY IN SHELL : NULL REMARK 230 R MERGE FOR SHELL (I) : NULL REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : 5.400 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : PHASER REMARK 230 STARTING MODEL: 2VXN REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 1 MM NA EDTA, 1 REMARK 280 MM DTT, 18% PEG6000, PH 5.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.17050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.18250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.17050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.18250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -70.86726 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -51.60539 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CE NZ REMARK 470 GLN A 26 OE1 NE2 REMARK 470 ARG A 56 CD NE CZ NH1 NH2 REMARK 470 LYS A 70 CD CE NZ REMARK 470 GLU A 107 CD OE1 OE2 REMARK 470 GLN A 111 CD OE1 NE2 REMARK 470 LYS A 118 CE NZ REMARK 470 GLN A 132 CD OE1 NE2 REMARK 470 ASN A 137 ND2 REMARK 470 LYS A 141 CE NZ REMARK 470 LYS A 153 CE NZ REMARK 470 LYS A 156 NZ REMARK 470 ASP A 157 OD1 OD2 REMARK 470 LYS A 192 NZ REMARK 470 LYS A 239 CE NZ REMARK 470 ARG A 250 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 135 OE1 GLU A 241 4445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -147.08 51.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGA A 301 DBREF 7AZ3 A 0 250 UNP P48499 TPIS_LEIME 1 251 SEQADV 7AZ3 GLN A 65 UNP P48499 GLU 66 ENGINEERED MUTATION SEQRES 1 A 251 MET SER ALA LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP SEQRES 2 A 251 LYS CYS ASN GLY THR THR ALA SER ILE GLU LYS LEU VAL SEQRES 3 A 251 GLN VAL PHE ASN GLU HIS THR ILE SER HIS ASP VAL GLN SEQRES 4 A 251 CYS VAL VAL ALA PRO THR PHE VAL HIS ILE PRO LEU VAL SEQRES 5 A 251 GLN ALA LYS LEU ARG ASN PRO LYS TYR VAL ILE SER ALA SEQRES 6 A 251 GLN ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU SEQRES 7 A 251 VAL SER MET PRO ILE LEU LYS ASP ILE GLY VAL HIS TRP SEQRES 8 A 251 VAL ILE LEU GLY HIS SER GLU ARG ARG THR TYR TYR GLY SEQRES 9 A 251 GLU THR ASP GLU ILE VAL ALA GLN LYS VAL SER GLU ALA SEQRES 10 A 251 CYS LYS GLN GLY PHE MET VAL ILE ALA CYS ILE GLY GLU SEQRES 11 A 251 THR LEU GLN GLN ARG GLU ALA ASN GLN THR ALA LYS VAL SEQRES 12 A 251 VAL LEU SER GLN THR SER ALA ILE ALA ALA LYS LEU THR SEQRES 13 A 251 LYS ASP ALA TRP ASN GLN VAL VAL LEU ALA TYR GLU PRO SEQRES 14 A 251 VAL TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLU SEQRES 15 A 251 GLN ALA GLN GLU VAL HIS LEU LEU LEU ARG LYS TRP VAL SEQRES 16 A 251 SER GLU ASN ILE GLY THR ASP VAL ALA ALA LYS LEU ARG SEQRES 17 A 251 ILE LEU TYR GLY GLY SER VAL ASN ALA ALA ASN ALA ALA SEQRES 18 A 251 THR LEU TYR ALA LYS PRO ASP ILE ASN GLY PHE LEU VAL SEQRES 19 A 251 GLY GLY ALA SER LEU LYS PRO GLU PHE ARG ASP ILE ILE SEQRES 20 A 251 ASP ALA THR ARG HET PGA A 301 11 HETNAM PGA 2-PHOSPHOGLYCOLIC ACID FORMUL 2 PGA C2 H5 O6 P FORMUL 3 HOH *203(H2 O) HELIX 1 AA1 THR A 17 HIS A 31 1 15 HELIX 2 AA2 THR A 44 VAL A 46 5 3 HELIX 3 AA3 HIS A 47 LEU A 55 1 9 HELIX 4 AA4 SER A 79 GLY A 87 1 9 HELIX 5 AA5 HIS A 95 TYR A 102 1 8 HELIX 6 AA6 THR A 105 GLN A 119 1 15 HELIX 7 AA7 THR A 130 ALA A 136 1 7 HELIX 8 AA8 GLN A 138 ALA A 152 1 15 HELIX 9 AA9 LYS A 153 LEU A 154 5 2 HELIX 10 AB1 THR A 155 ASN A 160 5 6 HELIX 11 AB2 PRO A 168 ILE A 172 5 5 HELIX 12 AB3 THR A 179 ILE A 198 1 20 HELIX 13 AB4 GLY A 199 LEU A 206 1 8 HELIX 14 AB5 ASN A 218 ALA A 224 1 7 HELIX 15 AB6 GLY A 234 PRO A 240 5 7 HELIX 16 AB7 GLU A 241 ALA A 248 1 8 SHEET 1 AA1 9 ILE A 7 ASN A 11 0 SHEET 2 AA1 9 GLN A 38 ALA A 42 1 O VAL A 40 N ALA A 10 SHEET 3 AA1 9 TYR A 60 ALA A 64 1 O SER A 63 N VAL A 41 SHEET 4 AA1 9 TRP A 90 LEU A 93 1 O TRP A 90 N ALA A 64 SHEET 5 AA1 9 MET A 122 ILE A 127 1 O ILE A 124 N LEU A 93 SHEET 6 AA1 9 VAL A 162 TYR A 166 1 O VAL A 163 N ALA A 125 SHEET 7 AA1 9 ILE A 208 GLY A 211 1 O LEU A 209 N LEU A 164 SHEET 8 AA1 9 GLY A 230 VAL A 233 1 O GLY A 230 N TYR A 210 SHEET 9 AA1 9 ILE A 7 ASN A 11 1 N ASN A 11 O VAL A 233 SITE 1 AC1 15 LYS A 13 HIS A 95 GLU A 167 ALA A 171 SITE 2 AC1 15 ILE A 172 GLY A 173 GLY A 212 SER A 213 SITE 3 AC1 15 LEU A 232 GLY A 234 GLY A 235 HOH A 419 SITE 4 AC1 15 HOH A 425 HOH A 426 HOH A 443 CRYST1 98.341 52.365 58.463 90.00 118.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010169 0.000000 0.005413 0.00000 SCALE2 0.000000 0.019097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019378 0.00000