HEADER OXIDOREDUCTASE 17-NOV-20 7AZQ TITLE CRYSTAL STRUCTURE OF THE IRON/MANGANESE CAMBIALISTIC SUPEROXIDE TITLE 2 DISMUTASE FROM RHODOBACTER CAPSULATUS COMPLEX WITH FE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [FE]; COMPND 3 CHAIN: A, E; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 GENE: SODB, SOD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUPEROXIDE OXIDOREDUCTASE, SODS, METAL ION BINDING PROTEIN., KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PONCE-SALVATIERRA,J.A.HERMOSO REVDAT 2 31-JAN-24 7AZQ 1 REMARK REVDAT 1 01-DEC-21 7AZQ 0 JRNL AUTH A.PONCE-SALVATIERRA,C.DI CAPUA,J.GONZALEZ,N.CORTEZ, JRNL AUTH 2 J.A.HERMOSO JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 CAMBIALISTIC SUPEROXIDE DISMUTASE FROM RHODOBACTER JRNL TITL 3 CAPSULATUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2027 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2767 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3106 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.673 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3214 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2824 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4340 ; 1.422 ; 1.853 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6569 ; 1.212 ; 2.931 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 6.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;34.691 ;25.033 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;12.373 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 5.296 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3656 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 0.709 ; 1.410 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1593 ; 0.709 ; 1.410 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1991 ; 1.100 ; 2.111 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1992 ; 1.099 ; 2.111 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 1.482 ; 1.533 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1616 ; 1.483 ; 1.533 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2347 ; 1.834 ; 2.242 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3770 ; 3.819 ;17.082 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3730 ; 3.720 ;16.747 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 88 REMARK 3 ORIGIN FOR THE GROUP (A): -51.1750 0.5400 -20.1570 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.1035 REMARK 3 T33: 0.0517 T12: -0.0087 REMARK 3 T13: 0.0286 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 1.6669 L22: 4.8357 REMARK 3 L33: 2.4305 L12: -0.3053 REMARK 3 L13: -0.1890 L23: 1.4569 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.1746 S13: 0.0836 REMARK 3 S21: -1.0477 S22: 0.1667 S23: 0.0156 REMARK 3 S31: -0.4294 S32: 0.1051 S33: -0.1876 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 89 E 111 REMARK 3 ORIGIN FOR THE GROUP (A): -51.0830 18.7350 -2.5100 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.1333 REMARK 3 T33: 0.1703 T12: -0.0457 REMARK 3 T13: 0.0540 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.0043 L22: 5.2166 REMARK 3 L33: 3.7901 L12: -3.0045 REMARK 3 L13: -2.4913 L23: 3.2562 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.1976 S13: 0.1810 REMARK 3 S21: -0.1120 S22: 0.2630 S23: -0.3912 REMARK 3 S31: -0.2048 S32: 0.3374 S33: -0.2841 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 112 E 200 REMARK 3 ORIGIN FOR THE GROUP (A): -50.7060 4.9380 -4.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0888 REMARK 3 T33: 0.0667 T12: 0.0133 REMARK 3 T13: 0.0159 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.8594 L22: 5.3817 REMARK 3 L33: 1.7682 L12: -0.6373 REMARK 3 L13: -0.1075 L23: 1.5950 REMARK 3 S TENSOR REMARK 3 S11: -0.1218 S12: -0.0487 S13: 0.1253 REMARK 3 S21: 0.0526 S22: 0.3167 S23: -0.0603 REMARK 3 S31: -0.1366 S32: 0.1227 S33: -0.1949 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): -37.4200 -17.5320 3.2800 REMARK 3 T TENSOR REMARK 3 T11: 0.3863 T22: 0.2567 REMARK 3 T33: 0.1769 T12: 0.2854 REMARK 3 T13: -0.2495 T23: -0.1787 REMARK 3 L TENSOR REMARK 3 L11: 2.3743 L22: 4.5810 REMARK 3 L33: 4.8361 L12: -0.4512 REMARK 3 L13: -1.9387 L23: 2.2038 REMARK 3 S TENSOR REMARK 3 S11: -0.2134 S12: -0.4057 S13: 0.1507 REMARK 3 S21: 1.2338 S22: 0.8040 S23: -0.7711 REMARK 3 S31: 0.8064 S32: 0.7757 S33: -0.5906 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -49.2290 -20.8080 1.6790 REMARK 3 T TENSOR REMARK 3 T11: 0.4539 T22: 0.0929 REMARK 3 T33: 0.0338 T12: 0.1624 REMARK 3 T13: -0.0145 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.8446 L22: 4.9805 REMARK 3 L33: 2.9550 L12: -0.8066 REMARK 3 L13: -1.5967 L23: 3.4594 REMARK 3 S TENSOR REMARK 3 S11: -0.3029 S12: -0.2334 S13: 0.0030 REMARK 3 S21: 1.3920 S22: 0.4060 S23: -0.0098 REMARK 3 S31: 1.0369 S32: 0.3337 S33: -0.1031 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): -37.8210 -35.4940 -16.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.1829 T22: 0.1968 REMARK 3 T33: 0.0694 T12: 0.1125 REMARK 3 T13: 0.0343 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.4577 L22: 6.9546 REMARK 3 L33: 4.8264 L12: -2.7739 REMARK 3 L13: 1.4630 L23: 3.2492 REMARK 3 S TENSOR REMARK 3 S11: -0.2541 S12: -0.0489 S13: 0.1976 REMARK 3 S21: 0.3754 S22: 0.4486 S23: -0.4979 REMARK 3 S31: 0.1626 S32: 0.4225 S33: -0.1946 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): -43.8810 -23.4490 -12.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.1513 REMARK 3 T33: 0.0433 T12: 0.0761 REMARK 3 T13: -0.0245 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 1.3615 L22: 4.9200 REMARK 3 L33: 2.0840 L12: -1.2802 REMARK 3 L13: -0.7286 L23: 2.0765 REMARK 3 S TENSOR REMARK 3 S11: -0.1308 S12: -0.0089 S13: -0.0192 REMARK 3 S21: 0.1594 S22: 0.3636 S23: -0.2771 REMARK 3 S31: 0.2598 S32: 0.3160 S33: -0.2327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 7AZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292111887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97909 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 57.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 122.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1DT0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 58% MPD, 200 MM CACL2, AND 100 MM REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.92000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 81.39500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 81.39500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 10.96000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 81.39500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 81.39500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.88000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 81.39500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.39500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 10.96000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 81.39500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.39500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.88000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.92000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 149 -114.95 56.28 REMARK 500 ARG A 176 -126.48 46.77 REMARK 500 ASN E 149 -114.84 55.73 REMARK 500 ARG E 176 -126.89 48.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 28 NE2 REMARK 620 2 HIS A 82 NE2 93.4 REMARK 620 3 ASP A 165 OD2 85.7 103.1 REMARK 620 4 HIS A 169 NE2 92.2 145.0 111.8 REMARK 620 5 HOH A 419 O 174.3 83.2 90.6 93.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE E 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 28 NE2 REMARK 620 2 HIS E 82 NE2 91.9 REMARK 620 3 ASP E 165 OD2 84.2 103.4 REMARK 620 4 HIS E 169 NE2 89.9 148.2 108.4 REMARK 620 5 HOH E 452 O 177.4 89.5 93.4 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 94 OD1 REMARK 620 2 HOH E 405 O 173.9 REMARK 620 3 HOH E 408 O 98.2 76.6 REMARK 620 N 1 2 DBREF 7AZQ A 2 200 UNP O30970 SODF_RHOCA 2 200 DBREF 7AZQ E 2 200 UNP O30970 SODF_RHOCA 2 200 SEQRES 1 A 199 ALA PHE GLU LEU PRO ALA LEU PRO TYR ALA HIS ASP ALA SEQRES 2 A 199 LEU ALA SER LEU GLY MET SER LYS GLU THR LEU GLU TYR SEQRES 3 A 199 HIS HIS ASP LEU HIS HIS LYS ALA TYR VAL ASP ASN GLY SEQRES 4 A 199 ASN LYS LEU ILE ALA GLY THR GLU TRP GLU GLY LYS SER SEQRES 5 A 199 VAL GLU GLU ILE VAL LYS GLY THR TYR CYS ALA GLY ALA SEQRES 6 A 199 VAL ALA GLN SER GLY ILE PHE ASN ASN ALA SER GLN HIS SEQRES 7 A 199 TRP ASN HIS ALA GLN PHE TRP GLU MET MET GLY PRO GLY SEQRES 8 A 199 GLU ASP LYS LYS MET PRO GLY ALA LEU GLU LYS ALA LEU SEQRES 9 A 199 VAL GLU SER PHE GLY SER VAL ALA LYS PHE LYS GLU ASP SEQRES 10 A 199 PHE ALA ALA ALA GLY ALA GLY GLN PHE GLY SER GLY TRP SEQRES 11 A 199 ALA TRP LEU VAL LYS ASP SER ASP GLY ALA LEU LYS ILE SEQRES 12 A 199 THR LYS THR GLU ASN GLY VAL ASN PRO LEU CYS PHE GLY SEQRES 13 A 199 GLN THR ALA LEU LEU GLY CYS ASP VAL TRP GLU HIS SER SEQRES 14 A 199 TYR TYR ILE ASP PHE ARG ASN LYS ARG PRO ALA TYR LEU SEQRES 15 A 199 THR ASN PHE LEU ASP LYS LEU VAL ASN TRP GLU ASN VAL SEQRES 16 A 199 ALA SER ARG MET SEQRES 1 E 199 ALA PHE GLU LEU PRO ALA LEU PRO TYR ALA HIS ASP ALA SEQRES 2 E 199 LEU ALA SER LEU GLY MET SER LYS GLU THR LEU GLU TYR SEQRES 3 E 199 HIS HIS ASP LEU HIS HIS LYS ALA TYR VAL ASP ASN GLY SEQRES 4 E 199 ASN LYS LEU ILE ALA GLY THR GLU TRP GLU GLY LYS SER SEQRES 5 E 199 VAL GLU GLU ILE VAL LYS GLY THR TYR CYS ALA GLY ALA SEQRES 6 E 199 VAL ALA GLN SER GLY ILE PHE ASN ASN ALA SER GLN HIS SEQRES 7 E 199 TRP ASN HIS ALA GLN PHE TRP GLU MET MET GLY PRO GLY SEQRES 8 E 199 GLU ASP LYS LYS MET PRO GLY ALA LEU GLU LYS ALA LEU SEQRES 9 E 199 VAL GLU SER PHE GLY SER VAL ALA LYS PHE LYS GLU ASP SEQRES 10 E 199 PHE ALA ALA ALA GLY ALA GLY GLN PHE GLY SER GLY TRP SEQRES 11 E 199 ALA TRP LEU VAL LYS ASP SER ASP GLY ALA LEU LYS ILE SEQRES 12 E 199 THR LYS THR GLU ASN GLY VAL ASN PRO LEU CYS PHE GLY SEQRES 13 E 199 GLN THR ALA LEU LEU GLY CYS ASP VAL TRP GLU HIS SER SEQRES 14 E 199 TYR TYR ILE ASP PHE ARG ASN LYS ARG PRO ALA TYR LEU SEQRES 15 E 199 THR ASN PHE LEU ASP LYS LEU VAL ASN TRP GLU ASN VAL SEQRES 16 E 199 ALA SER ARG MET HET FE A 301 1 HET FE E 301 1 HET CA E 302 1 HETNAM FE FE (III) ION HETNAM CA CALCIUM ION FORMUL 3 FE 2(FE 3+) FORMUL 5 CA CA 2+ FORMUL 6 HOH *200(H2 O) HELIX 1 AA1 LEU A 15 GLY A 19 5 5 HELIX 2 AA2 SER A 21 LEU A 31 1 11 HELIX 3 AA3 LEU A 31 ALA A 45 1 15 HELIX 4 AA4 SER A 53 TYR A 62 1 10 HELIX 5 AA5 SER A 70 MET A 89 1 20 HELIX 6 AA6 PRO A 98 GLY A 110 1 13 HELIX 7 AA7 SER A 111 GLN A 126 1 16 HELIX 8 AA8 ASN A 152 GLY A 157 5 6 HELIX 9 AA9 TRP A 167 SER A 170 5 4 HELIX 10 AB1 TYR A 171 ARG A 176 1 6 HELIX 11 AB2 LYS A 178 LEU A 190 1 13 HELIX 12 AB3 ASN A 192 ARG A 199 1 8 HELIX 13 AB4 LEU E 15 GLY E 19 5 5 HELIX 14 AB5 SER E 21 LEU E 31 1 11 HELIX 15 AB6 LEU E 31 ALA E 45 1 15 HELIX 16 AB7 SER E 53 TYR E 62 1 10 HELIX 17 AB8 SER E 70 MET E 89 1 20 HELIX 18 AB9 PRO E 98 GLY E 110 1 13 HELIX 19 AC1 SER E 111 GLN E 126 1 16 HELIX 20 AC2 ASN E 152 GLY E 157 5 6 HELIX 21 AC3 TRP E 167 SER E 170 5 4 HELIX 22 AC4 TYR E 171 ARG E 176 1 6 HELIX 23 AC5 LYS E 178 LEU E 190 1 13 HELIX 24 AC6 ASN E 192 ARG E 199 1 8 SHEET 1 AA1 3 LEU A 142 GLU A 148 0 SHEET 2 AA1 3 GLY A 130 LYS A 136 -1 N VAL A 135 O LYS A 143 SHEET 3 AA1 3 THR A 159 ASP A 165 -1 O LEU A 161 N LEU A 134 SHEET 1 AA2 3 LEU E 142 GLU E 148 0 SHEET 2 AA2 3 GLY E 130 LYS E 136 -1 N VAL E 135 O LYS E 143 SHEET 3 AA2 3 THR E 159 ASP E 165 -1 O LEU E 161 N LEU E 134 LINK NE2 HIS A 28 FE FE A 301 1555 1555 2.01 LINK NE2 HIS A 82 FE FE A 301 1555 1555 1.94 LINK OD2 ASP A 165 FE FE A 301 1555 1555 2.02 LINK NE2 HIS A 169 FE FE A 301 1555 1555 1.96 LINK FE FE A 301 O HOH A 419 1555 1555 2.08 LINK NE2 HIS E 28 FE FE E 301 1555 1555 2.03 LINK NE2 HIS E 82 FE FE E 301 1555 1555 1.96 LINK OD1 ASP E 94 CA CA E 302 1555 1555 2.31 LINK OD2 ASP E 165 FE FE E 301 1555 1555 2.01 LINK NE2 HIS E 169 FE FE E 301 1555 1555 2.00 LINK FE FE E 301 O HOH E 452 1555 1555 2.06 LINK CA CA E 302 O HOH E 405 1555 1555 2.12 LINK CA CA E 302 O HOH E 408 1555 1555 2.28 CRYST1 162.790 162.790 43.840 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006143 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006143 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022810 0.00000