HEADER DNA BINDING PROTEIN 18-NOV-20 7B08 TITLE TGOT APO COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TO POL; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS GORGONARIUS; SOURCE 3 ORGANISM_TAXID: 71997; SOURCE 4 GENE: POL, POLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ARCHAEA, POLYMERASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.SAMSON,P.LEGRAND,M.TEKPINAR,J.ROZENSKI,M.ABRAMOV,P.HOLLIGER, AUTHOR 2 V.PINHEIRO,P.HERDEWIJN,M.DELARUE REVDAT 2 31-JAN-24 7B08 1 REMARK REVDAT 1 30-DEC-20 7B08 0 JRNL AUTH C.SAMSON,P.LEGRAND,M.TEKPINAR,J.ROZENSKI,M.ABRAMOV, JRNL AUTH 2 P.HOLLIGER,V.B.PINHEIRO,P.HERDWIJN,M.DELARUE JRNL TITL STRUCTURAL STUDIES OF HNA SUBSTRATE SPECIFICITY IN MUTANTS JRNL TITL 2 OF AN ARCHAEAL DNA POLYMERASE OBTAINED BY DIRECTED JRNL TITL 3 EVOLUTION. JRNL REF BIOMOLECULES V. 10 2020 JRNL REFN ESSN 2218-273X JRNL PMID 33302546 JRNL DOI 10.3390/BIOM10121647 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (20-MAY-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 41950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2098 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.41 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.67 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 797 REMARK 3 BIN R VALUE (WORKING SET) : 0.2926 REMARK 3 BIN FREE R VALUE : 0.3144 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 42 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6094 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.49880 REMARK 3 B22 (A**2) : 14.81230 REMARK 3 B33 (A**2) : -7.31350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.530 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.334 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.234 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.345 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.240 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6251 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8425 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2256 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1040 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6251 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 786 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4503 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 0.75 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.64 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|131 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.5267 -4.0201 45.7575 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.3035 REMARK 3 T33: -0.2029 T12: -0.0398 REMARK 3 T13: -0.1325 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.5049 L22: 3.8982 REMARK 3 L33: 3.3840 L12: -1.0884 REMARK 3 L13: 0.9397 L23: 1.7045 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.1708 S13: 0.1528 REMARK 3 S21: 0.5442 S22: 0.2311 S23: -0.5442 REMARK 3 S31: 0.0402 S32: 0.1607 S33: -0.2536 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|132 - A|327 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.7501 13.7352 15.7848 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.1605 REMARK 3 T33: -0.0300 T12: 0.0009 REMARK 3 T13: -0.1520 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 3.3444 L22: 8.3155 REMARK 3 L33: 7.8315 L12: -0.4492 REMARK 3 L13: 0.5147 L23: -0.9312 REMARK 3 S TENSOR REMARK 3 S11: -0.2303 S12: 0.3608 S13: 0.4968 REMARK 3 S21: -0.5312 S22: -0.0837 S23: 0.1321 REMARK 3 S31: -0.5228 S32: 0.0490 S33: 0.3140 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|328 - A|532 A|801 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.8901 -21.7886 21.2452 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.1954 REMARK 3 T33: -0.1750 T12: -0.0657 REMARK 3 T13: -0.0359 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.4278 L22: 2.7845 REMARK 3 L33: 1.5537 L12: -1.0684 REMARK 3 L13: -0.1020 L23: 0.6500 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.1333 S13: 0.0217 REMARK 3 S21: -0.1375 S22: -0.0879 S23: -0.3261 REMARK 3 S31: -0.0980 S32: 0.1083 S33: 0.0536 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|533 - A|610 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.6808 -30.6758 -1.2529 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.0737 REMARK 3 T33: -0.1368 T12: 0.0188 REMARK 3 T13: -0.0185 T23: 0.1112 REMARK 3 L TENSOR REMARK 3 L11: 3.9572 L22: 7.1707 REMARK 3 L33: 8.3155 L12: 1.0485 REMARK 3 L13: -1.8987 L23: -0.8550 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.3704 S13: 0.2779 REMARK 3 S21: 0.5442 S22: 0.3246 S23: 0.5442 REMARK 3 S31: -0.1939 S32: -0.5442 S33: -0.3678 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|612 - A|757 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.4237 -1.5515 -18.6170 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: 0.1304 REMARK 3 T33: 0.2759 T12: 0.0667 REMARK 3 T13: 0.0841 T23: 0.0763 REMARK 3 L TENSOR REMARK 3 L11: 0.8807 L22: 8.3155 REMARK 3 L33: 6.3628 L12: 1.1920 REMARK 3 L13: -1.0030 L23: -1.5722 REMARK 3 S TENSOR REMARK 3 S11: 0.1497 S12: -0.1181 S13: 0.5442 REMARK 3 S21: 0.0067 S22: 0.1964 S23: -0.1073 REMARK 3 S31: -0.5442 S32: -0.2278 S33: -0.3462 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7B08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41950 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.394 REMARK 200 RESOLUTION RANGE LOW (A) : 45.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.12220 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.03400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1TGO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 20K AND 0.1 M MES-NAOH PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.53000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.43000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.43000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.53000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 611 REMARK 465 GLN A 665 REMARK 465 ILE A 666 REMARK 465 THR A 667 REMARK 465 ARG A 668 REMARK 465 ASP A 669 REMARK 465 LEU A 670 REMARK 465 LYS A 671 REMARK 465 ASP A 672 REMARK 465 TYR A 673 REMARK 465 LYS A 674 REMARK 465 ALA A 675 REMARK 465 ILE A 710 REMARK 465 GLY A 711 REMARK 465 ASP A 712 REMARK 465 GLN A 758 REMARK 465 LYS A 759 REMARK 465 THR A 760 REMARK 465 ARG A 761 REMARK 465 GLN A 762 REMARK 465 VAL A 763 REMARK 465 GLY A 764 REMARK 465 LEU A 765 REMARK 465 GLY A 766 REMARK 465 ALA A 767 REMARK 465 TRP A 768 REMARK 465 LEU A 769 REMARK 465 LYS A 770 REMARK 465 PRO A 771 REMARK 465 LYS A 772 REMARK 465 THR A 773 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 757 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 58 -81.09 -97.30 REMARK 500 PHE A 214 -71.67 -139.32 REMARK 500 ALA A 385 89.84 -154.60 REMARK 500 ASN A 399 75.89 52.81 REMARK 500 GLN A 436 -60.01 67.56 REMARK 500 TRP A 504 37.58 -94.50 REMARK 500 THR A 541 -63.25 62.57 REMARK 500 LYS A 592 -0.40 69.97 REMARK 500 GLU A 600 3.34 -68.11 REMARK 500 THR A 697 43.98 -90.92 REMARK 500 GLN A 736 -70.59 -114.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TTP A 801 DBREF 7B08 A 1 773 UNP P56689 DPOL_THEGO 1 773 SEQADV 7B08 GLN A 93 UNP P56689 VAL 93 CONFLICT SEQADV 7B08 ALA A 141 UNP P56689 ASP 141 CONFLICT SEQADV 7B08 ALA A 143 UNP P56689 GLU 143 CONFLICT SEQADV 7B08 LEU A 485 UNP P56689 ALA 485 CONFLICT SEQRES 1 A 773 MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 773 PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 773 LYS ILE ASP TYR ASP ARG ASN PHE GLU PRO TYR ILE TYR SEQRES 4 A 773 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU ASP VAL LYS SEQRES 5 A 773 LYS ILE THR ALA GLU ARG HIS GLY THR THR VAL ARG VAL SEQRES 6 A 773 VAL ARG ALA GLU LYS VAL LYS LYS LYS PHE LEU GLY ARG SEQRES 7 A 773 PRO ILE GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN SEQRES 8 A 773 ASP GLN PRO ALA ILE ARG ASP LYS ILE LYS GLU HIS PRO SEQRES 9 A 773 ALA VAL VAL ASP ILE TYR GLU TYR ASP ILE PRO PHE ALA SEQRES 10 A 773 LYS ARG TYR LEU ILE ASP LYS GLY LEU ILE PRO MET GLU SEQRES 11 A 773 GLY ASP GLU GLU LEU LYS MET LEU ALA PHE ALA ILE ALA SEQRES 12 A 773 THR LEU TYR HIS GLU GLY GLU GLU PHE ALA GLU GLY PRO SEQRES 13 A 773 ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG SEQRES 14 A 773 VAL ILE THR TRP LYS ASN ILE ASP LEU PRO TYR VAL ASP SEQRES 15 A 773 VAL VAL SER THR GLU LYS GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 773 LYS VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 773 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 773 ARG SER GLU LYS LEU GLY VAL LYS PHE ILE LEU GLY ARG SEQRES 19 A 773 GLU GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 773 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 773 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 773 THR LEU GLU ALA VAL TYR GLU ALA ILE PHE GLY GLN PRO SEQRES 23 A 773 LYS GLU LYS VAL TYR ALA GLU GLU ILE ALA GLN ALA TRP SEQRES 24 A 773 GLU THR GLY GLU GLY LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 773 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 773 PHE PHE PRO MET GLU ALA GLN LEU SER ARG LEU VAL GLY SEQRES 27 A 773 GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 773 LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 773 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU ARG GLU LEU SEQRES 30 A 773 ALA ARG ARG ARG GLU SER TYR ALA GLY GLY TYR VAL LYS SEQRES 31 A 773 GLU PRO GLU ARG GLY LEU TRP GLU ASN ILE VAL TYR LEU SEQRES 32 A 773 ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR HIS SEQRES 33 A 773 ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS GLU SEQRES 34 A 773 GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS LYS PHE CYS SEQRES 35 A 773 LYS ASP PHE PRO GLY PHE ILE PRO SER LEU LEU GLY ASP SEQRES 36 A 773 LEU LEU GLU GLU ARG GLN LYS VAL LYS LYS LYS MET LYS SEQRES 37 A 773 ALA THR ILE ASP PRO ILE GLU LYS LYS LEU LEU ASP TYR SEQRES 38 A 773 ARG GLN ARG LEU ILE LYS ILE LEU ALA ASN SER PHE TYR SEQRES 39 A 773 GLY TYR TYR GLY TYR ALA LYS ALA ARG TRP TYR CYS LYS SEQRES 40 A 773 GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLN TYR SEQRES 41 A 773 ILE GLU THR THR ILE ARG GLU ILE GLU GLU LYS PHE GLY SEQRES 42 A 773 PHE LYS VAL LEU TYR ALA ASP THR ASP GLY PHE PHE ALA SEQRES 43 A 773 THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS LYS SEQRES 44 A 773 ALA LYS GLU PHE LEU ASP TYR ILE ASN ALA LYS LEU PRO SEQRES 45 A 773 GLY LEU LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS ARG SEQRES 46 A 773 GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE ASP SEQRES 47 A 773 GLU GLU ASP LYS ILE THR THR ARG GLY LEU GLU ILE VAL SEQRES 48 A 773 ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN ALA SEQRES 49 A 773 ARG VAL LEU GLU ALA ILE LEU LYS HIS GLY ASP VAL GLU SEQRES 50 A 773 GLU ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS LEU SEQRES 51 A 773 SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE TYR SEQRES 52 A 773 GLU GLN ILE THR ARG ASP LEU LYS ASP TYR LYS ALA THR SEQRES 53 A 773 GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA ARG SEQRES 54 A 773 GLY ILE LYS ILE ARG PRO GLY THR VAL ILE SER TYR ILE SEQRES 55 A 773 VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA ILE SEQRES 56 A 773 PRO PHE ASP GLU PHE ASP PRO ALA LYS HIS LYS TYR ASP SEQRES 57 A 773 ALA GLU TYR TYR ILE GLU ASN GLN VAL LEU PRO ALA VAL SEQRES 58 A 773 GLU ARG ILE LEU ARG ALA PHE GLY TYR ARG LYS GLU ASP SEQRES 59 A 773 LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU GLY ALA SEQRES 60 A 773 TRP LEU LYS PRO LYS THR HET TTP A 801 13 HET PGE A 802 10 HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 TTP C10 H17 N2 O14 P3 FORMUL 3 PGE C6 H14 O4 FORMUL 4 HOH *57(H2 O) HELIX 1 AA1 ASP A 44 SER A 46 5 3 HELIX 2 AA2 ALA A 47 LYS A 53 1 7 HELIX 3 AA3 GLN A 91 GLU A 102 1 12 HELIX 4 AA4 PRO A 115 LYS A 124 1 10 HELIX 5 AA5 THR A 186 ASP A 202 1 17 HELIX 6 AA6 PHE A 214 GLY A 227 1 14 HELIX 7 AA7 LEU A 260 ILE A 268 1 9 HELIX 8 AA8 THR A 274 GLY A 284 1 11 HELIX 9 AA9 TYR A 291 GLY A 302 1 12 HELIX 10 AB1 GLY A 304 GLY A 338 1 35 HELIX 11 AB2 SER A 340 SER A 345 1 6 HELIX 12 AB3 SER A 348 ARG A 364 1 17 HELIX 13 AB4 ASP A 373 ARG A 380 1 8 HELIX 14 AB5 SER A 407 HIS A 416 1 10 HELIX 15 AB6 GLY A 447 THR A 470 1 24 HELIX 16 AB7 ASP A 472 ASN A 491 1 20 HELIX 17 AB8 SER A 492 GLY A 498 1 7 HELIX 18 AB9 CYS A 506 LYS A 531 1 26 HELIX 19 AC1 ASP A 552 LEU A 571 1 20 HELIX 20 AC2 GLU A 617 LYS A 632 1 16 HELIX 21 AC3 ASP A 635 LYS A 652 1 18 HELIX 22 AC4 PRO A 656 LEU A 660 5 5 HELIX 23 AC5 GLY A 677 ARG A 689 1 13 HELIX 24 AC6 ASP A 718 PHE A 720 5 3 HELIX 25 AC7 ASP A 728 ASN A 735 1 8 HELIX 26 AC8 GLN A 736 ALA A 747 1 12 HELIX 27 AC9 ARG A 751 LEU A 755 5 5 SHEET 1 AA1 3 ILE A 2 GLU A 10 0 SHEET 2 AA1 3 LYS A 13 GLU A 22 -1 O PHE A 19 N LEU A 3 SHEET 3 AA1 3 GLU A 25 ASP A 31 -1 O LYS A 27 N LYS A 20 SHEET 1 AA2 4 ALA A 68 PHE A 75 0 SHEET 2 AA2 4 ARG A 78 TYR A 86 -1 O LYS A 84 N GLU A 69 SHEET 3 AA2 4 TYR A 37 LEU A 42 -1 N ALA A 40 O TRP A 83 SHEET 4 AA2 4 VAL A 106 TYR A 110 -1 O ASP A 108 N LEU A 41 SHEET 1 AA3 2 THR A 55 GLU A 57 0 SHEET 2 AA3 2 THR A 62 ARG A 64 -1 O VAL A 63 N ALA A 56 SHEET 1 AA4 6 VAL A 181 VAL A 183 0 SHEET 2 AA4 6 GLY A 167 THR A 172 1 N VAL A 170 O ASP A 182 SHEET 3 AA4 6 ILE A 157 ASP A 164 -1 N ILE A 160 O ILE A 171 SHEET 4 AA4 6 MET A 137 THR A 144 -1 N ALA A 141 O SER A 161 SHEET 5 AA4 6 VAL A 205 THR A 208 1 O ILE A 207 N LEU A 138 SHEET 6 AA4 6 ILE A 256 ASP A 259 1 O ILE A 256 N LEU A 206 SHEET 1 AA5 2 LYS A 240 MET A 244 0 SHEET 2 AA5 2 ARG A 247 GLU A 251 -1 O ALA A 249 N GLN A 242 SHEET 1 AA6 6 LYS A 535 ALA A 539 0 SHEET 2 AA6 6 GLY A 543 THR A 547 -1 O THR A 547 N LYS A 535 SHEET 3 AA6 6 LEU A 396 PHE A 405 -1 N VAL A 401 O ALA A 546 SHEET 4 AA6 6 LEU A 577 THR A 590 -1 O TYR A 583 N ILE A 400 SHEET 5 AA6 6 LYS A 593 ILE A 597 -1 O ALA A 595 N PHE A 587 SHEET 6 AA6 6 ILE A 603 ARG A 606 -1 O THR A 604 N VAL A 596 SHEET 1 AA7 2 TYR A 431 VAL A 433 0 SHEET 2 AA7 2 LYS A 440 CYS A 442 -1 O PHE A 441 N ASP A 432 SHEET 1 AA8 4 TRP A 615 SER A 616 0 SHEET 2 AA8 4 ILE A 662 GLU A 664 -1 O TYR A 663 N TRP A 615 SHEET 3 AA8 4 ILE A 699 VAL A 703 -1 O TYR A 701 N ILE A 662 SHEET 4 AA8 4 ALA A 714 PRO A 716 -1 O ILE A 715 N ILE A 702 SSBOND 1 CYS A 428 CYS A 442 1555 1555 2.04 CRYST1 65.060 105.220 152.860 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015370 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006542 0.00000