HEADER DNA BINDING PROTEIN 19-NOV-20 7B0G TITLE TGOT_6G12 BINARY WITH 2 HCTPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TO POL; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*GP*GP*AP*GP*GP*GP*CP*AP*GP*()P*())-3'); COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*AP*TP*TP*GP*GP*CP*TP*GP*CP*CP*CP*TP*CP*C)-3'); COMPND 13 CHAIN: T; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS GORGONARIUS; SOURCE 3 ORGANISM_TAXID: 71997; SOURCE 4 GENE: POL, POLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS ARCHAEA, POLYMERASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.SAMSON,P.LEGRAND,M.TEKPINAR,J.ROZENSKI,M.ABRAMOV,P.HOLLIGER, AUTHOR 2 V.PINHEIRO,P.HERDEWIJN,M.DELARUE REVDAT 2 31-JAN-24 7B0G 1 REMARK REVDAT 1 30-DEC-20 7B0G 0 JRNL AUTH C.SAMSON,P.LEGRAND,M.TEKPINAR,J.ROZENSKI,M.ABRAMOV, JRNL AUTH 2 P.HOLLIGER,V.B.PINHEIRO,P.HERDWIJN,M.DELARUE JRNL TITL STRUCTURAL STUDIES OF HNA SUBSTRATE SPECIFICITY IN MUTANTS JRNL TITL 2 OF AN ARCHAEAL DNA POLYMERASE OBTAINED BY DIRECTED JRNL TITL 3 EVOLUTION. JRNL REF BIOMOLECULES V. 10 2020 JRNL REFN ESSN 2218-273X JRNL PMID 33302546 JRNL DOI 10.3390/BIOM10121647 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (20-MAY-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1442 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 577 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2688 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 548 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE : 0.3249 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.03 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 29 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6059 REMARK 3 NUCLEIC ACID ATOMS : 453 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 131.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 128.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.04690 REMARK 3 B22 (A**2) : 14.55050 REMARK 3 B33 (A**2) : 4.49640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.520 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.028 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.340 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.047 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.345 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6726 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9167 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2349 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1072 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6726 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 845 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4657 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.88 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.49 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.19 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|131 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.2384 16.9755 -65.3645 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: -0.1628 REMARK 3 T33: -0.0788 T12: 0.1440 REMARK 3 T13: 0.1520 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.8958 L22: 2.3838 REMARK 3 L33: 1.9754 L12: 1.7492 REMARK 3 L13: -1.5521 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0584 S13: -0.0220 REMARK 3 S21: -0.5442 S22: -0.1029 S23: -0.1266 REMARK 3 S31: 0.1833 S32: -0.0653 S33: 0.1007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|132 - A|327 } REMARK 3 ORIGIN FOR THE GROUP (A): -18.8270 -0.7349 -36.6021 REMARK 3 T TENSOR REMARK 3 T11: -0.0021 T22: -0.1144 REMARK 3 T33: 0.0064 T12: -0.0758 REMARK 3 T13: 0.1520 T23: -0.0733 REMARK 3 L TENSOR REMARK 3 L11: 0.5596 L22: 5.9384 REMARK 3 L33: 3.1146 L12: 0.2061 REMARK 3 L13: -2.4810 L23: -0.7054 REMARK 3 S TENSOR REMARK 3 S11: -0.1139 S12: 0.0145 S13: -0.1314 REMARK 3 S21: 0.5442 S22: -0.1914 S23: 0.1634 REMARK 3 S31: 0.1777 S32: 0.0995 S33: 0.3053 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|328 - A|532 } REMARK 3 ORIGIN FOR THE GROUP (A): -3.9063 35.2568 -41.5569 REMARK 3 T TENSOR REMARK 3 T11: -0.0791 T22: 0.0155 REMARK 3 T33: 0.0273 T12: 0.0508 REMARK 3 T13: 0.0793 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.0361 L22: 2.2214 REMARK 3 L33: 2.1124 L12: 0.3727 REMARK 3 L13: -0.3042 L23: 0.1506 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: 0.0811 S13: -0.1383 REMARK 3 S21: 0.0159 S22: -0.1724 S23: 0.0293 REMARK 3 S31: -0.3438 S32: 0.0879 S33: 0.1434 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|533 - A|610 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.9269 45.0381 -19.7495 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.0898 REMARK 3 T33: -0.3040 T12: 0.0852 REMARK 3 T13: 0.1520 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 0.9926 L22: 5.4325 REMARK 3 L33: 5.3370 L12: -1.2990 REMARK 3 L13: -2.0700 L23: -0.1098 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: -0.3222 S13: 0.0767 REMARK 3 S21: 0.5442 S22: 0.2877 S23: 0.4641 REMARK 3 S31: -0.5442 S32: -0.1957 S33: -0.2620 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|611 - A|769 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.5278 20.8832 2.5457 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.1316 REMARK 3 T33: -0.3040 T12: -0.1520 REMARK 3 T13: 0.0348 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 0.0422 L22: 0.8159 REMARK 3 L33: 5.0563 L12: -1.7305 REMARK 3 L13: 0.9514 L23: -2.1788 REMARK 3 S TENSOR REMARK 3 S11: 0.1999 S12: -0.0810 S13: -0.3470 REMARK 3 S21: -0.1753 S22: 0.1444 S23: -0.1040 REMARK 3 S31: 0.0360 S32: -0.4780 S33: -0.3443 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { P|* T|* } REMARK 3 ORIGIN FOR THE GROUP (A): 5.1736 25.2268 -23.3024 REMARK 3 T TENSOR REMARK 3 T11: 0.0642 T22: 0.0587 REMARK 3 T33: -0.1745 T12: -0.1400 REMARK 3 T13: -0.1520 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 7.5143 REMARK 3 L33: 7.0058 L12: -2.5598 REMARK 3 L13: -2.3623 L23: -2.9104 REMARK 3 S TENSOR REMARK 3 S11: -0.0953 S12: -0.5442 S13: -0.5442 REMARK 3 S21: 0.5442 S22: -0.0984 S23: -0.0484 REMARK 3 S31: 0.2191 S32: 0.5442 S33: 0.1937 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7B0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28838 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.20380 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.17100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1TGO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 20K AND 0.1 M MES-NAOH PH6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.10500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.89000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.38500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 115.89000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.10500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.38500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 667 REMARK 465 LYS A 668 REMARK 465 GLN A 669 REMARK 465 LEU A 670 REMARK 465 HIS A 671 REMARK 465 ASP A 672 REMARK 465 TYR A 673 REMARK 465 ARG A 674 REMARK 465 ALA A 675 REMARK 465 ARG A 676 REMARK 465 GLY A 677 REMARK 465 PRO A 678 REMARK 465 HIS A 679 REMARK 465 VAL A 680 REMARK 465 SER A 681 REMARK 465 VAL A 682 REMARK 465 ALA A 683 REMARK 465 LYS A 684 REMARK 465 ARG A 685 REMARK 465 LEU A 686 REMARK 465 ALA A 687 REMARK 465 ALA A 688 REMARK 465 ARG A 689 REMARK 465 GLY A 690 REMARK 465 ILE A 691 REMARK 465 LYS A 692 REMARK 465 ILE A 693 REMARK 465 ARG A 694 REMARK 465 SER A 707 REMARK 465 GLY A 708 REMARK 465 ARG A 709 REMARK 465 ILE A 710 REMARK 465 LYS A 770 REMARK 465 PRO A 771 REMARK 465 LYS A 772 REMARK 465 THR A 773 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 576 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 620 CE NZ REMARK 480 ARG A 641 CD NE CZ NH1 NH2 REMARK 480 ARG A 746 CD NE CZ NH1 NH2 REMARK 480 LYS A 752 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC P 10 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 6HC P 13 O3' - P - OP1 ANGL. DEV. = 6.9 DEGREES REMARK 500 6HC P 14 O3' - P - OP1 ANGL. DEV. = -15.3 DEGREES REMARK 500 DG T 3 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 164 -158.61 -152.79 REMARK 500 PHE A 214 -72.37 -138.48 REMARK 500 ASN A 399 74.69 54.47 REMARK 500 GLN A 436 -64.33 69.35 REMARK 500 TRP A 504 33.28 -92.53 REMARK 500 THR A 541 -65.13 64.80 REMARK 500 GLU A 580 -57.10 64.68 REMARK 500 LYS A 592 -2.70 71.69 REMARK 500 LEU A 608 -81.82 -106.69 REMARK 500 ARG A 612 46.68 -103.62 REMARK 500 ASP A 614 82.25 54.64 REMARK 500 GLN A 736 -71.08 -113.99 REMARK 500 LYS A 759 156.58 69.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CTP A 801 DBREF 7B0G A 1 773 UNP P56689 DPOL_THEGO 1 773 DBREF 7B0G P 4 14 PDB 7B0G 7B0G 4 14 DBREF 7B0G T 3 13 PDB 7B0G 7B0G 3 13 SEQADV 7B0G GLN A 93 UNP P56689 VAL 93 CONFLICT SEQADV 7B0G ALA A 141 UNP P56689 ASP 141 CONFLICT SEQADV 7B0G ALA A 143 UNP P56689 GLU 143 CONFLICT SEQADV 7B0G LEU A 485 UNP P56689 ALA 485 CONFLICT SEQADV 7B0G ALA A 589 UNP P56689 VAL 589 CONFLICT SEQADV 7B0G LYS A 609 UNP P56689 GLU 609 CONFLICT SEQADV 7B0G MET A 610 UNP P56689 ILE 610 CONFLICT SEQADV 7B0G GLN A 659 UNP P56689 LYS 659 CONFLICT SEQADV 7B0G GLN A 664 UNP P56689 GLU 664 CONFLICT SEQADV 7B0G PRO A 665 UNP P56689 GLN 665 CONFLICT SEQADV 7B0G LYS A 668 UNP P56689 ARG 668 CONFLICT SEQADV 7B0G GLN A 669 UNP P56689 ASP 669 CONFLICT SEQADV 7B0G HIS A 671 UNP P56689 LYS 671 CONFLICT SEQADV 7B0G ARG A 674 UNP P56689 LYS 674 CONFLICT SEQADV 7B0G ARG A 676 UNP P56689 THR 676 CONFLICT SEQADV 7B0G SER A 681 UNP P56689 ALA 681 CONFLICT SEQADV 7B0G PRO A 704 UNP P56689 LEU 704 CONFLICT SEQADV 7B0G GLY A 730 UNP P56689 GLU 730 CONFLICT SEQRES 1 A 773 MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 773 PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 773 LYS ILE ASP TYR ASP ARG ASN PHE GLU PRO TYR ILE TYR SEQRES 4 A 773 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU ASP VAL LYS SEQRES 5 A 773 LYS ILE THR ALA GLU ARG HIS GLY THR THR VAL ARG VAL SEQRES 6 A 773 VAL ARG ALA GLU LYS VAL LYS LYS LYS PHE LEU GLY ARG SEQRES 7 A 773 PRO ILE GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN SEQRES 8 A 773 ASP GLN PRO ALA ILE ARG ASP LYS ILE LYS GLU HIS PRO SEQRES 9 A 773 ALA VAL VAL ASP ILE TYR GLU TYR ASP ILE PRO PHE ALA SEQRES 10 A 773 LYS ARG TYR LEU ILE ASP LYS GLY LEU ILE PRO MET GLU SEQRES 11 A 773 GLY ASP GLU GLU LEU LYS MET LEU ALA PHE ALA ILE ALA SEQRES 12 A 773 THR LEU TYR HIS GLU GLY GLU GLU PHE ALA GLU GLY PRO SEQRES 13 A 773 ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG SEQRES 14 A 773 VAL ILE THR TRP LYS ASN ILE ASP LEU PRO TYR VAL ASP SEQRES 15 A 773 VAL VAL SER THR GLU LYS GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 773 LYS VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 773 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 773 ARG SER GLU LYS LEU GLY VAL LYS PHE ILE LEU GLY ARG SEQRES 19 A 773 GLU GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 773 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 773 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 773 THR LEU GLU ALA VAL TYR GLU ALA ILE PHE GLY GLN PRO SEQRES 23 A 773 LYS GLU LYS VAL TYR ALA GLU GLU ILE ALA GLN ALA TRP SEQRES 24 A 773 GLU THR GLY GLU GLY LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 773 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 773 PHE PHE PRO MET GLU ALA GLN LEU SER ARG LEU VAL GLY SEQRES 27 A 773 GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 773 LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 773 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU ARG GLU LEU SEQRES 30 A 773 ALA ARG ARG ARG GLU SER TYR ALA GLY GLY TYR VAL LYS SEQRES 31 A 773 GLU PRO GLU ARG GLY LEU TRP GLU ASN ILE VAL TYR LEU SEQRES 32 A 773 ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR HIS SEQRES 33 A 773 ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS GLU SEQRES 34 A 773 GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS LYS PHE CYS SEQRES 35 A 773 LYS ASP PHE PRO GLY PHE ILE PRO SER LEU LEU GLY ASP SEQRES 36 A 773 LEU LEU GLU GLU ARG GLN LYS VAL LYS LYS LYS MET LYS SEQRES 37 A 773 ALA THR ILE ASP PRO ILE GLU LYS LYS LEU LEU ASP TYR SEQRES 38 A 773 ARG GLN ARG LEU ILE LYS ILE LEU ALA ASN SER PHE TYR SEQRES 39 A 773 GLY TYR TYR GLY TYR ALA LYS ALA ARG TRP TYR CYS LYS SEQRES 40 A 773 GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLN TYR SEQRES 41 A 773 ILE GLU THR THR ILE ARG GLU ILE GLU GLU LYS PHE GLY SEQRES 42 A 773 PHE LYS VAL LEU TYR ALA ASP THR ASP GLY PHE PHE ALA SEQRES 43 A 773 THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS LYS SEQRES 44 A 773 ALA LYS GLU PHE LEU ASP TYR ILE ASN ALA LYS LEU PRO SEQRES 45 A 773 GLY LEU LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS ARG SEQRES 46 A 773 GLY PHE PHE ALA THR LYS LYS LYS TYR ALA VAL ILE ASP SEQRES 47 A 773 GLU GLU ASP LYS ILE THR THR ARG GLY LEU LYS MET VAL SEQRES 48 A 773 ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN ALA SEQRES 49 A 773 ARG VAL LEU GLU ALA ILE LEU LYS HIS GLY ASP VAL GLU SEQRES 50 A 773 GLU ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS LEU SEQRES 51 A 773 SER LYS TYR GLU VAL PRO PRO GLU GLN LEU VAL ILE TYR SEQRES 52 A 773 GLN PRO ILE THR LYS GLN LEU HIS ASP TYR ARG ALA ARG SEQRES 53 A 773 GLY PRO HIS VAL SER VAL ALA LYS ARG LEU ALA ALA ARG SEQRES 54 A 773 GLY ILE LYS ILE ARG PRO GLY THR VAL ILE SER TYR ILE SEQRES 55 A 773 VAL PRO LYS GLY SER GLY ARG ILE GLY ASP ARG ALA ILE SEQRES 56 A 773 PRO PHE ASP GLU PHE ASP PRO ALA LYS HIS LYS TYR ASP SEQRES 57 A 773 ALA GLY TYR TYR ILE GLU ASN GLN VAL LEU PRO ALA VAL SEQRES 58 A 773 GLU ARG ILE LEU ARG ALA PHE GLY TYR ARG LYS GLU ASP SEQRES 59 A 773 LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU GLY ALA SEQRES 60 A 773 TRP LEU LYS PRO LYS THR SEQRES 1 P 11 DG DG DA DG DG DG DC DA DG 6HC 6HC SEQRES 1 T 11 DG DG DC DT DG DC DC DC DT DC DC HET 6HC P 13 20 HET 6HC P 14 20 HET CTP A 801 13 HET PO4 T 101 5 HET PO4 T 102 5 HETNAM 6HC 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(CYTOSIN-1-YL)-6'-O- HETNAM 2 6HC PHOSPHORYL-D-ARABINO-HEXITOL HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 2 6HC 2(C10 H16 N3 O7 P) FORMUL 4 CTP C9 H16 N3 O14 P3 FORMUL 5 PO4 2(O4 P 3-) HELIX 1 AA1 ASP A 44 SER A 46 5 3 HELIX 2 AA2 ALA A 47 LYS A 53 1 7 HELIX 3 AA3 GLN A 91 GLU A 102 1 12 HELIX 4 AA4 PRO A 115 LYS A 124 1 10 HELIX 5 AA5 THR A 186 ASP A 202 1 17 HELIX 6 AA6 PHE A 214 GLY A 227 1 14 HELIX 7 AA7 LEU A 260 ILE A 268 1 9 HELIX 8 AA8 THR A 274 PHE A 283 1 10 HELIX 9 AA9 TYR A 291 GLY A 302 1 12 HELIX 10 AB1 GLY A 304 GLY A 338 1 35 HELIX 11 AB2 SER A 340 SER A 345 1 6 HELIX 12 AB3 SER A 348 ARG A 364 1 17 HELIX 13 AB4 ASP A 373 ARG A 380 1 8 HELIX 14 AB5 SER A 407 HIS A 416 1 10 HELIX 15 AB6 GLY A 447 THR A 470 1 24 HELIX 16 AB7 ASP A 472 ASN A 491 1 20 HELIX 17 AB8 SER A 492 GLY A 498 1 7 HELIX 18 AB9 CYS A 506 GLY A 533 1 28 HELIX 19 AC1 ASP A 552 LEU A 571 1 20 HELIX 20 AC2 SER A 616 LYS A 632 1 17 HELIX 21 AC3 ASP A 635 LYS A 652 1 18 HELIX 22 AC4 PRO A 656 VAL A 661 5 6 HELIX 23 AC5 ASP A 718 PHE A 720 5 3 HELIX 24 AC6 ASP A 728 ASN A 735 1 8 HELIX 25 AC7 GLN A 736 ARG A 746 1 11 HELIX 26 AC8 ALA A 747 GLY A 749 5 3 HELIX 27 AC9 ARG A 751 LEU A 755 5 5 SHEET 1 AA1 3 ILE A 2 GLU A 10 0 SHEET 2 AA1 3 LYS A 13 GLU A 22 -1 O PHE A 19 N LEU A 3 SHEET 3 AA1 3 GLU A 25 ASP A 31 -1 O LYS A 27 N LYS A 20 SHEET 1 AA2 4 ARG A 67 PHE A 75 0 SHEET 2 AA2 4 ARG A 78 TYR A 86 -1 O ARG A 78 N PHE A 75 SHEET 3 AA2 4 TYR A 37 LEU A 42 -1 N ILE A 38 O LEU A 85 SHEET 4 AA2 4 VAL A 106 TYR A 110 -1 O ASP A 108 N LEU A 41 SHEET 1 AA3 2 ALA A 56 ARG A 58 0 SHEET 2 AA3 2 THR A 61 VAL A 63 -1 O VAL A 63 N ALA A 56 SHEET 1 AA4 6 VAL A 181 VAL A 183 0 SHEET 2 AA4 6 GLY A 167 THR A 172 1 N VAL A 170 O ASP A 182 SHEET 3 AA4 6 ILE A 157 ASP A 164 -1 N ILE A 160 O ILE A 171 SHEET 4 AA4 6 MET A 137 THR A 144 -1 N ALA A 141 O SER A 161 SHEET 5 AA4 6 VAL A 205 THR A 208 1 O ILE A 207 N LEU A 138 SHEET 6 AA4 6 ILE A 256 ASP A 259 1 O PHE A 258 N LEU A 206 SHEET 1 AA5 2 LYS A 240 MET A 244 0 SHEET 2 AA5 2 ARG A 247 GLU A 251 -1 O ALA A 249 N GLN A 242 SHEET 1 AA6 6 LYS A 535 ALA A 539 0 SHEET 2 AA6 6 GLY A 543 THR A 547 -1 O THR A 547 N LYS A 535 SHEET 3 AA6 6 LEU A 396 PHE A 405 -1 N VAL A 401 O ALA A 546 SHEET 4 AA6 6 LEU A 577 THR A 590 -1 O TYR A 583 N ILE A 400 SHEET 5 AA6 6 LYS A 593 ILE A 597 -1 O ALA A 595 N PHE A 587 SHEET 6 AA6 6 ILE A 603 ARG A 606 -1 O THR A 604 N VAL A 596 SHEET 1 AA7 2 TYR A 431 VAL A 433 0 SHEET 2 AA7 2 LYS A 440 CYS A 442 -1 O PHE A 441 N ASP A 432 SHEET 1 AA8 3 ILE A 662 PRO A 665 0 SHEET 2 AA8 3 VAL A 698 ILE A 702 -1 O TYR A 701 N ILE A 662 SHEET 3 AA8 3 ILE A 715 PRO A 716 -1 O ILE A 715 N ILE A 702 SSBOND 1 CYS A 506 CYS A 509 1555 1555 2.05 LINK O3' DG P 12 P 6HC P 13 1555 1555 1.61 LINK O3' 6HC P 13 P 6HC P 14 1555 1555 1.59 CRYST1 56.210 106.770 231.780 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004314 0.00000