HEADER TRANSFERASE 25-NOV-20 7B1R TITLE CRYSTAL STRUCTURE OF B. SUBTILIS GLUCOSE-1-PHOSPHATE TITLE 2 URIDYLYLTRANSFERASE YNGB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE YNGB; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-D-GLUCOSYL-1-PHOSPHATE URIDYLYLTRANSFERASE,UDP-GLUCOSE COMPND 5 PYROPHOSPHORYLASE,UDPGP,URIDINE DIPHOSPHOGLUCOSE PYROPHOSPHORYLASE; COMPND 6 EC: 2.7.7.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: YNGB, BSU18180; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UDP-GLUCOSE, GLUCOSE-1-PHOSPHATE, UTP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.WU,R.M.L.MORGAN,P.FREEMONT,A.GRUNDLING REVDAT 3 21-JUL-21 7B1R 1 JRNL REVDAT 2 24-FEB-21 7B1R 1 JRNL REVDAT 1 10-FEB-21 7B1R 0 JRNL AUTH C.H.WU,J.RISMONDO,R.M.L.MORGAN,Y.SHEN,M.J.LOESSNER, JRNL AUTH 2 G.LARROUY-MAUMUS,P.S.FREEMONT,A.GRUNDLING JRNL TITL BACILLUS SUBTILIS YNGB CONTRIBUTES TO WALL TEICHOIC ACID JRNL TITL 2 GLUCOSYLATION AND GLYCOLIPID FORMATION DURING ANAEROBIC JRNL TITL 3 GROWTH. JRNL REF J.BIOL.CHEM. V. 296 00384 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33556370 JRNL DOI 10.1016/J.JBC.2021.100384 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 18416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 937 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1301 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.4120 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4378 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.13000 REMARK 3 B22 (A**2) : -6.74000 REMARK 3 B33 (A**2) : 1.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.385 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.342 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.296 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.135 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4446 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6033 ; 1.792 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 8.372 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;38.249 ;22.676 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 700 ;24.063 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.821 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3358 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7B1R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19457 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 55.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM CITRATE TRIBASIC REMARK 280 MONOHYDRATE, 0.05M LITHIUM CITRATE TRIBASIC TETRAHYDRATE, 0.1M REMARK 280 SODIUM PHOSPHATE MONOBASIC MONOHYDRATE, 25% PEG6000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.95500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.95500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.95500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.30500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.75000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.30500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.95500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -89.75000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 315 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 223 REMARK 465 GLY A 224 REMARK 465 ALA A 225 REMARK 465 GLY A 226 REMARK 465 ASN A 227 REMARK 465 ARG B 2 REMARK 465 ARG B 223 REMARK 465 GLY B 224 REMARK 465 ALA B 225 REMARK 465 GLY B 226 REMARK 465 ASN B 227 REMARK 465 LEU B 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 84 CD CE NZ REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 LEU A 111 CG CD1 CD2 REMARK 470 SER A 177 OG REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 GLU A 294 CG CD OE1 OE2 REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 298 CG CD1 CD2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 LEU B 111 CG CD1 CD2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 LEU B 218 CG CD1 CD2 REMARK 470 GLU B 228 CG CD OE1 OE2 REMARK 470 GLN B 230 CG CD OE1 NE2 REMARK 470 LEU B 235 CG CD1 CD2 REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 470 LYS B 241 CG CD CE NZ REMARK 470 LYS B 289 CG CD CE NZ REMARK 470 LYS B 293 CG CD CE NZ REMARK 470 GLU B 294 CG CD OE1 OE2 REMARK 470 ARG B 297 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 273 O HOH B 301 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 192 C PRO A 193 N 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 193 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 PRO A 193 C - N - CD ANGL. DEV. = -15.5 DEGREES REMARK 500 MSE A 272 CG - SE - CE ANGL. DEV. = 13.3 DEGREES REMARK 500 MSE B 91 CG - SE - CE ANGL. DEV. = 24.5 DEGREES REMARK 500 MSE B 205 CG - SE - CE ANGL. DEV. = 15.6 DEGREES REMARK 500 MSE B 295 CG - SE - CE ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 63.27 -153.90 REMARK 500 ILE A 33 -77.65 -94.03 REMARK 500 LYS A 84 66.11 -62.60 REMARK 500 ASP A 167 50.24 -91.57 REMARK 500 GLN A 180 116.25 -165.67 REMARK 500 GLU A 191 -109.45 -91.02 REMARK 500 MSE A 205 52.81 -109.09 REMARK 500 GLU A 242 141.06 -179.68 REMARK 500 ARG A 297 35.33 -87.90 REMARK 500 ALA B 12 41.07 -152.96 REMARK 500 VAL B 34 -61.89 -105.82 REMARK 500 GLU B 81 13.29 -59.71 REMARK 500 VAL B 152 -73.21 -84.25 REMARK 500 TYR B 171 -159.24 -112.51 REMARK 500 MSE B 205 61.90 -110.03 REMARK 500 LEU B 296 48.35 -101.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 329 DISTANCE = 7.99 ANGSTROMS DBREF 7B1R A 2 297 UNP O31822 YNGB_BACSU 2 297 DBREF 7B1R B 2 297 UNP O31822 YNGB_BACSU 2 297 SEQADV 7B1R LEU A 298 UNP O31822 EXPRESSION TAG SEQADV 7B1R LEU B 298 UNP O31822 EXPRESSION TAG SEQRES 1 A 297 ARG LYS LYS VAL ARG LYS ALA VAL ILE PRO ALA ALA GLY SEQRES 2 A 297 LEU GLY THR ARG PHE LEU PRO ALA THR LYS ALA GLN PRO SEQRES 3 A 297 LYS GLU MSE LEU PRO ILE VAL ASP LYS PRO ALA ILE GLN SEQRES 4 A 297 TYR ILE VAL GLU GLU ALA ALA GLU SER GLY ILE GLU ASP SEQRES 5 A 297 ILE LEU ILE ILE THR GLY ARG ASN LYS ARG SER ILE GLU SEQRES 6 A 297 ASP HIS PHE ASP ARG SER ALA GLU LEU GLU PHE ASN LEU SEQRES 7 A 297 ARG GLU LYS GLY LYS THR GLU THR LEU LYS GLU MSE GLN SEQRES 8 A 297 GLN ILE ALA ASP LEU ALA ASN ILE HIS TYR ILE ARG GLN SEQRES 9 A 297 LYS GLU PRO LEU GLY LEU GLY HIS ALA VAL LEU CYS ALA SEQRES 10 A 297 GLU HIS PHE ILE GLY ASP GLU PRO PHE ALA VAL LEU LEU SEQRES 11 A 297 GLY ASP ASP ILE MSE VAL SER GLU THR PRO ALA LEU ARG SEQRES 12 A 297 GLN LEU MSE ASP VAL TYR ASP VAL TYR GLY THR GLU VAL SEQRES 13 A 297 VAL GLY VAL GLN SER VAL LEU PRO GLU ASP VAL SER LYS SEQRES 14 A 297 TYR GLY ILE ILE ASN THR SER GLY SER GLN GLY HIS VAL SEQRES 15 A 297 TYR GLU VAL ASN ASP LEU VAL GLU LYS PRO SER PRO GLU SEQRES 16 A 297 GLU ALA PRO SER GLU ILE ALA VAL MSE GLY ARG TYR VAL SEQRES 17 A 297 LEU ASN SER SER ILE PHE SER VAL LEU LYS THR ILE GLY SEQRES 18 A 297 ARG GLY ALA GLY ASN GLU ILE GLN LEU THR ASP ALA LEU SEQRES 19 A 297 ARG GLU VAL CYS ARG LYS GLU PRO ILE HIS ALA ARG LEU SEQRES 20 A 297 LEU GLU GLY ASN ARG TYR ASP ILE GLY ASP LYS LEU GLY SEQRES 21 A 297 CYS PHE LYS ALA SER THR GLU ILE GLY LEU MSE ARG PRO SEQRES 22 A 297 GLU MSE ARG SER GLN LEU LEU ALA TYR LEU GLU ASP VAL SEQRES 23 A 297 ILE LYS ARG GLU THR LYS GLU MSE LEU ARG LEU SEQRES 1 B 297 ARG LYS LYS VAL ARG LYS ALA VAL ILE PRO ALA ALA GLY SEQRES 2 B 297 LEU GLY THR ARG PHE LEU PRO ALA THR LYS ALA GLN PRO SEQRES 3 B 297 LYS GLU MSE LEU PRO ILE VAL ASP LYS PRO ALA ILE GLN SEQRES 4 B 297 TYR ILE VAL GLU GLU ALA ALA GLU SER GLY ILE GLU ASP SEQRES 5 B 297 ILE LEU ILE ILE THR GLY ARG ASN LYS ARG SER ILE GLU SEQRES 6 B 297 ASP HIS PHE ASP ARG SER ALA GLU LEU GLU PHE ASN LEU SEQRES 7 B 297 ARG GLU LYS GLY LYS THR GLU THR LEU LYS GLU MSE GLN SEQRES 8 B 297 GLN ILE ALA ASP LEU ALA ASN ILE HIS TYR ILE ARG GLN SEQRES 9 B 297 LYS GLU PRO LEU GLY LEU GLY HIS ALA VAL LEU CYS ALA SEQRES 10 B 297 GLU HIS PHE ILE GLY ASP GLU PRO PHE ALA VAL LEU LEU SEQRES 11 B 297 GLY ASP ASP ILE MSE VAL SER GLU THR PRO ALA LEU ARG SEQRES 12 B 297 GLN LEU MSE ASP VAL TYR ASP VAL TYR GLY THR GLU VAL SEQRES 13 B 297 VAL GLY VAL GLN SER VAL LEU PRO GLU ASP VAL SER LYS SEQRES 14 B 297 TYR GLY ILE ILE ASN THR SER GLY SER GLN GLY HIS VAL SEQRES 15 B 297 TYR GLU VAL ASN ASP LEU VAL GLU LYS PRO SER PRO GLU SEQRES 16 B 297 GLU ALA PRO SER GLU ILE ALA VAL MSE GLY ARG TYR VAL SEQRES 17 B 297 LEU ASN SER SER ILE PHE SER VAL LEU LYS THR ILE GLY SEQRES 18 B 297 ARG GLY ALA GLY ASN GLU ILE GLN LEU THR ASP ALA LEU SEQRES 19 B 297 ARG GLU VAL CYS ARG LYS GLU PRO ILE HIS ALA ARG LEU SEQRES 20 B 297 LEU GLU GLY ASN ARG TYR ASP ILE GLY ASP LYS LEU GLY SEQRES 21 B 297 CYS PHE LYS ALA SER THR GLU ILE GLY LEU MSE ARG PRO SEQRES 22 B 297 GLU MSE ARG SER GLN LEU LEU ALA TYR LEU GLU ASP VAL SEQRES 23 B 297 ILE LYS ARG GLU THR LYS GLU MSE LEU ARG LEU MODRES 7B1R MSE A 30 MET MODIFIED RESIDUE MODRES 7B1R MSE A 91 MET MODIFIED RESIDUE MODRES 7B1R MSE A 136 MET MODIFIED RESIDUE MODRES 7B1R MSE A 147 MET MODIFIED RESIDUE MODRES 7B1R MSE A 205 MET MODIFIED RESIDUE MODRES 7B1R MSE A 272 MET MODIFIED RESIDUE MODRES 7B1R MSE A 276 MET MODIFIED RESIDUE MODRES 7B1R MSE A 295 MET MODIFIED RESIDUE MODRES 7B1R MSE B 30 MET MODIFIED RESIDUE MODRES 7B1R MSE B 91 MET MODIFIED RESIDUE MODRES 7B1R MSE B 136 MET MODIFIED RESIDUE MODRES 7B1R MSE B 147 MET MODIFIED RESIDUE MODRES 7B1R MSE B 205 MET MODIFIED RESIDUE MODRES 7B1R MSE B 272 MET MODIFIED RESIDUE MODRES 7B1R MSE B 276 MET MODIFIED RESIDUE MODRES 7B1R MSE B 295 MET MODIFIED RESIDUE HET MSE A 30 8 HET MSE A 91 8 HET MSE A 136 8 HET MSE A 147 8 HET MSE A 205 8 HET MSE A 272 8 HET MSE A 276 8 HET MSE A 295 8 HET MSE B 30 8 HET MSE B 91 8 HET MSE B 136 8 HET MSE B 147 8 HET MSE B 205 8 HET MSE B 272 8 HET MSE B 276 8 HET MSE B 295 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 HOH *54(H2 O) HELIX 1 AA1 GLY A 16 LEU A 20 5 5 HELIX 2 AA2 PRO A 21 ALA A 25 5 5 HELIX 3 AA3 PRO A 27 LEU A 31 5 5 HELIX 4 AA4 PRO A 37 SER A 49 1 13 HELIX 5 AA5 LYS A 62 PHE A 69 1 8 HELIX 6 AA6 SER A 72 GLU A 81 1 10 HELIX 7 AA7 LYS A 84 ALA A 95 1 12 HELIX 8 AA8 GLY A 112 ALA A 118 1 7 HELIX 9 AA9 ALA A 118 GLY A 123 1 6 HELIX 10 AB1 PRO A 141 GLY A 154 1 14 HELIX 11 AB2 LEU A 164 SER A 169 5 6 HELIX 12 AB3 SER A 213 GLY A 222 1 10 HELIX 13 AB4 THR A 232 GLU A 242 1 11 HELIX 14 AB5 ASP A 258 MSE A 272 1 15 HELIX 15 AB6 ARG A 273 ARG A 297 1 25 HELIX 16 AB7 GLY B 16 LEU B 20 5 5 HELIX 17 AB8 PRO B 27 LEU B 31 5 5 HELIX 18 AB9 PRO B 37 SER B 49 1 13 HELIX 19 AC1 LYS B 62 PHE B 69 1 8 HELIX 20 AC2 SER B 72 GLU B 81 1 10 HELIX 21 AC3 LYS B 84 ALA B 95 1 12 HELIX 22 AC4 GLY B 110 CYS B 117 1 8 HELIX 23 AC5 ALA B 118 GLY B 123 1 6 HELIX 24 AC6 PRO B 141 GLY B 154 1 14 HELIX 25 AC7 ASN B 211 GLY B 222 1 12 HELIX 26 AC8 LEU B 231 VAL B 238 1 8 HELIX 27 AC9 ASP B 258 ARG B 273 1 16 HELIX 28 AD1 ARG B 273 LEU B 296 1 24 SHEET 1 AA118 ILE A 174 GLN A 180 0 SHEET 2 AA118 VAL A 183 LEU A 189 -1 O VAL A 183 N GLN A 180 SHEET 3 AA118 HIS A 245 LEU A 248 -1 O ALA A 246 N TYR A 184 SHEET 4 AA118 VAL A 157 SER A 162 1 N VAL A 160 O ARG A 247 SHEET 5 AA118 ILE A 202 ASN A 211 -1 O MSE A 205 N GLY A 159 SHEET 6 AA118 PRO A 126 LEU A 130 -1 N PHE A 127 O LEU A 210 SHEET 7 AA118 LYS A 7 ALA A 12 1 N VAL A 9 O ALA A 128 SHEET 8 AA118 ASP A 53 THR A 58 1 O ILE A 57 N ALA A 12 SHEET 9 AA118 ASN A 99 ARG A 104 1 O HIS A 101 N ILE A 56 SHEET 10 AA118 ASN B 99 ARG B 104 -1 O TYR B 102 N TYR A 102 SHEET 11 AA118 ASP B 53 THR B 58 1 N ILE B 54 O HIS B 101 SHEET 12 AA118 LYS B 7 PRO B 11 1 N ALA B 8 O LEU B 55 SHEET 13 AA118 PHE B 127 LEU B 130 1 O LEU B 130 N VAL B 9 SHEET 14 AA118 ILE B 202 LEU B 210 -1 O LEU B 210 N PHE B 127 SHEET 15 AA118 VAL B 157 SER B 162 -1 N GLY B 159 O MSE B 205 SHEET 16 AA118 ILE B 244 LEU B 248 1 O ARG B 247 N VAL B 160 SHEET 17 AA118 VAL B 183 LEU B 189 -1 N TYR B 184 O ALA B 246 SHEET 18 AA118 ILE B 174 GLN B 180 -1 N ASN B 175 O ASN B 187 SHEET 1 AA2 2 ASP A 134 VAL A 137 0 SHEET 2 AA2 2 ASN A 252 ASP A 255 -1 O ASN A 252 N VAL A 137 SHEET 1 AA3 2 ASP B 134 VAL B 137 0 SHEET 2 AA3 2 ASN B 252 ASP B 255 -1 O ASN B 252 N VAL B 137 LINK C GLU A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N LEU A 31 1555 1555 1.33 LINK C GLU A 90 N MSE A 91 1555 1555 1.34 LINK C MSE A 91 N GLN A 92 1555 1555 1.34 LINK C ILE A 135 N MSE A 136 1555 1555 1.34 LINK C MSE A 136 N VAL A 137 1555 1555 1.33 LINK C LEU A 146 N MSE A 147 1555 1555 1.34 LINK C MSE A 147 N ASP A 148 1555 1555 1.34 LINK C VAL A 204 N MSE A 205 1555 1555 1.34 LINK C MSE A 205 N GLY A 206 1555 1555 1.36 LINK C LEU A 271 N MSE A 272 1555 1555 1.34 LINK C MSE A 272 N ARG A 273 1555 1555 1.33 LINK C GLU A 275 N MSE A 276 1555 1555 1.34 LINK C MSE A 276 N ARG A 277 1555 1555 1.34 LINK C GLU A 294 N MSE A 295 1555 1555 1.34 LINK C MSE A 295 N LEU A 296 1555 1555 1.35 LINK C GLU B 29 N MSE B 30 1555 1555 1.34 LINK C MSE B 30 N LEU B 31 1555 1555 1.34 LINK C GLU B 90 N MSE B 91 1555 1555 1.34 LINK C MSE B 91 N GLN B 92 1555 1555 1.33 LINK C ILE B 135 N MSE B 136 1555 1555 1.35 LINK C MSE B 136 N VAL B 137 1555 1555 1.33 LINK C LEU B 146 N MSE B 147 1555 1555 1.34 LINK C MSE B 147 N ASP B 148 1555 1555 1.34 LINK C VAL B 204 N MSE B 205 1555 1555 1.34 LINK C MSE B 205 N GLY B 206 1555 1555 1.35 LINK C LEU B 271 N MSE B 272 1555 1555 1.34 LINK C MSE B 272 N ARG B 273 1555 1555 1.33 LINK C GLU B 275 N MSE B 276 1555 1555 1.34 LINK C MSE B 276 N ARG B 277 1555 1555 1.33 LINK C GLU B 294 N MSE B 295 1555 1555 1.35 LINK C MSE B 295 N LEU B 296 1555 1555 1.34 CISPEP 1 LEU A 20 PRO A 21 0 -2.26 CISPEP 2 LEU B 20 PRO B 21 0 -9.49 CRYST1 53.910 158.610 179.500 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018549 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005571 0.00000