HEADER HYDROLASE 25-NOV-20 7B1X TITLE CRYSTAL STRUCTURE OF COLD-ACTIVE ESTERASE PMGL3 FROM PERMAFROST TITLE 2 METAGENOMIC LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTERASE PMGL3; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ESTERASE, HSL, PERMAFROST, COLD-ACTIVE, PSYCHROPHILIC, TETRAMER, KEYWDS 2 DIMER, LIPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,A.Y.NIKOLAEVA,L.E.PETROVSKAYA,M.V.KRYUKOVA,E.A.KRYUKOVA, AUTHOR 2 D.A.KORZHENEVSKY,G.Y.LOMAKINA,K.A.NOVOTOTSKAYA-VLASOVA,E.M.RIVKINA, AUTHOR 3 D.A.DOLGIKH,M.P.KIRPICHNIKOV,V.O.POPOV REVDAT 2 31-JAN-24 7B1X 1 REMARK REVDAT 1 03-NOV-21 7B1X 0 JRNL AUTH K.M.BOYKO,M.V.KRYUKOVA,L.E.PETROVSKAYA,E.A.KRYUKOVA, JRNL AUTH 2 A.Y.NIKOLAEVA,D.A.KORZHENEVSKY,G.Y.LOMAKINA, JRNL AUTH 3 K.A.NOVOTOTSKAYA-VLASOVA,E.M.RIVKINA,D.A.DOLGIKH, JRNL AUTH 4 M.P.KIRPICHNIKOV,V.O.POPOV JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A COLD-ACTIVE JRNL TITL 2 PMGL3 ESTERASE WITH UNUSUAL OLIGOMERIC STRUCTURE. JRNL REF BIOMOLECULES V. 11 2021 JRNL REFN ESSN 2218-273X JRNL PMID 33466452 JRNL DOI 10.3390/BIOM11010057 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 22446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1666 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 1.32000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.450 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4632 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6310 ; 2.074 ; 1.622 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 7.109 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;35.540 ;21.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 684 ;19.578 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 593 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3620 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 302 B 1 302 9755 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1198 0.6853 5.0134 REMARK 3 T TENSOR REMARK 3 T11: 0.0691 T22: 0.1510 REMARK 3 T33: 0.0154 T12: 0.0320 REMARK 3 T13: -0.0200 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.2237 L22: 0.5197 REMARK 3 L33: 0.7971 L12: 0.0132 REMARK 3 L13: 0.1046 L23: 0.0307 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: 0.3387 S13: 0.0384 REMARK 3 S21: 0.0018 S22: 0.0082 S23: -0.0437 REMARK 3 S31: 0.0937 S32: 0.0167 S33: -0.0719 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): -48.4461 15.1620 29.6386 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.1104 REMARK 3 T33: 0.1001 T12: 0.0281 REMARK 3 T13: 0.0009 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.9504 L22: 0.5354 REMARK 3 L33: 0.7949 L12: -0.0105 REMARK 3 L13: 0.0318 L23: 0.0594 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.0740 S13: 0.2219 REMARK 3 S21: 0.0227 S22: 0.0116 S23: 0.0235 REMARK 3 S31: -0.0213 S32: -0.2404 S33: -0.0609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7B1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 37.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.034 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.26 REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3FAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 PH 5.6; 20% ISOPROPANOL; 20% PEG4000, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.90000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -46.40110 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.17751 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 46.40110 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -59.17751 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -46.40110 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 59.17751 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 303 REMARK 465 HIS A 304 REMARK 465 LEU A 305 REMARK 465 GLU A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 GLY B 303 REMARK 465 HIS B 304 REMARK 465 LEU B 305 REMARK 465 GLU B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 22 NE CZ NH1 NH2 REMARK 470 ILE A 29 CD1 REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 ILE A 31 CD1 REMARK 470 ASN A 202 CG OD1 ND2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 LYS B 73 CE NZ REMARK 470 LYS B 139 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 47 CD GLU A 47 OE1 0.075 REMARK 500 GLU A 47 CD GLU A 47 OE2 0.092 REMARK 500 GLU B 47 CD GLU B 47 OE2 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 62 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG A 254 CG - CD - NE ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 255 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 GLU B 62 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG B 192 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP B 228 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG B 254 CG - CD - NE ANGL. DEV. = -19.1 DEGREES REMARK 500 ARG B 254 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 254 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 255 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 55 86.16 -155.02 REMARK 500 HIS A 83 12.81 58.28 REMARK 500 PRO A 120 32.09 -97.02 REMARK 500 SER A 149 -112.53 40.39 REMARK 500 SER A 177 51.88 36.31 REMARK 500 ASP A 242 54.60 -97.57 REMARK 500 SER B 55 78.89 -155.22 REMARK 500 HIS B 83 16.92 56.67 REMARK 500 SER B 149 -114.00 40.74 REMARK 500 SER B 177 49.40 38.45 REMARK 500 ALA B 213 58.60 38.37 REMARK 500 ASP B 231 2.29 80.68 REMARK 500 ASP B 242 58.88 -100.71 REMARK 500 ASN B 270 -2.00 71.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 301 GLY A 302 145.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 498 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 499 DISTANCE = 6.06 ANGSTROMS DBREF 7B1X A 1 312 PDB 7B1X 7B1X 1 312 DBREF 7B1X B 1 312 PDB 7B1X 7B1X 1 312 SEQRES 1 A 312 MET ASN GLY ASN ASP PRO ASP ILE ALA GLY PHE LYS GLN SEQRES 2 A 312 GLN LEU VAL GLN MET THR ALA MET ARG GLU SER GLN PRO SEQRES 3 A 312 PRO SER ILE GLU ILE GLU ARG GLN MET PHE ASP ALA GLN SEQRES 4 A 312 HIS GLY ALA VAL PRO PRO ALA GLU GLY CYS LEU ILE GLU SEQRES 5 A 312 PRO ILE SER THR GLY GLY VAL ARG GLY GLU ARG ILE THR SEQRES 6 A 312 PRO LYS SER ALA ASP THR SER LYS ALA LEU ILE TYR PHE SEQRES 7 A 312 HIS GLY GLY GLY HIS LEU PHE GLY SER ALA LEU SER HIS SEQRES 8 A 312 ARG HIS LEU VAL SER ARG LEU ALA ALA ALA ALA GLY VAL SEQRES 9 A 312 VAL ALA TYR ASN MET GLU TYR ARG LEU ALA PRO GLU ASN SEQRES 10 A 312 PRO TYR PRO ALA GLY LEU ASP ASP ALA GLU GLN ALA TYR SEQRES 11 A 312 ARG PHE VAL LEU ALA GLN GLY PHE LYS PRO GLU ASP ILE SEQRES 12 A 312 ILE VAL ALA GLY GLU SER ALA GLY GLY ASN LEU ALA ALA SEQRES 13 A 312 ALA LEU LEU LEU LYS LEU ARG ASP GLN ASP LEU PRO GLN SEQRES 14 A 312 PRO ALA GLY ALA TYR LEU LEU SER PRO TRP LEU ASP MET SEQRES 15 A 312 SER GLN SER GLY ALA SER TYR GLU ALA ARG GLY PRO HIS SEQRES 16 A 312 ASP PRO MET ILE THR HIS ASN ALA LEU THR GLY CYS SER SEQRES 17 A 312 ALA ALA TYR ARG ALA GLY ALA SER ALA GLU ASP PRO LEU SEQRES 18 A 312 ILE SER PRO ALA LYS ALA ASP LEU ALA ASP LEU PRO SER SEQRES 19 A 312 LEU PHE ILE GLN VAL GLY ALA ASP GLU VAL LEU LEU SER SEQRES 20 A 312 ASP SER VAL GLU PHE THR ARG ARG ALA ALA LEU ALA GLY SEQRES 21 A 312 LEU ASP VAL ARG LEU HIS VAL TRP ALA ASN MET VAL HIS SEQRES 22 A 312 ALA TRP PRO LEU PHE HIS PHE ALA LEU PRO VAL SER GLY SEQRES 23 A 312 LEU ALA ALA ILE ASP GLU ALA GLY ALA TRP ILE SER ARG SEQRES 24 A 312 GLN LEU GLY GLY HIS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 312 MET ASN GLY ASN ASP PRO ASP ILE ALA GLY PHE LYS GLN SEQRES 2 B 312 GLN LEU VAL GLN MET THR ALA MET ARG GLU SER GLN PRO SEQRES 3 B 312 PRO SER ILE GLU ILE GLU ARG GLN MET PHE ASP ALA GLN SEQRES 4 B 312 HIS GLY ALA VAL PRO PRO ALA GLU GLY CYS LEU ILE GLU SEQRES 5 B 312 PRO ILE SER THR GLY GLY VAL ARG GLY GLU ARG ILE THR SEQRES 6 B 312 PRO LYS SER ALA ASP THR SER LYS ALA LEU ILE TYR PHE SEQRES 7 B 312 HIS GLY GLY GLY HIS LEU PHE GLY SER ALA LEU SER HIS SEQRES 8 B 312 ARG HIS LEU VAL SER ARG LEU ALA ALA ALA ALA GLY VAL SEQRES 9 B 312 VAL ALA TYR ASN MET GLU TYR ARG LEU ALA PRO GLU ASN SEQRES 10 B 312 PRO TYR PRO ALA GLY LEU ASP ASP ALA GLU GLN ALA TYR SEQRES 11 B 312 ARG PHE VAL LEU ALA GLN GLY PHE LYS PRO GLU ASP ILE SEQRES 12 B 312 ILE VAL ALA GLY GLU SER ALA GLY GLY ASN LEU ALA ALA SEQRES 13 B 312 ALA LEU LEU LEU LYS LEU ARG ASP GLN ASP LEU PRO GLN SEQRES 14 B 312 PRO ALA GLY ALA TYR LEU LEU SER PRO TRP LEU ASP MET SEQRES 15 B 312 SER GLN SER GLY ALA SER TYR GLU ALA ARG GLY PRO HIS SEQRES 16 B 312 ASP PRO MET ILE THR HIS ASN ALA LEU THR GLY CYS SER SEQRES 17 B 312 ALA ALA TYR ARG ALA GLY ALA SER ALA GLU ASP PRO LEU SEQRES 18 B 312 ILE SER PRO ALA LYS ALA ASP LEU ALA ASP LEU PRO SER SEQRES 19 B 312 LEU PHE ILE GLN VAL GLY ALA ASP GLU VAL LEU LEU SER SEQRES 20 B 312 ASP SER VAL GLU PHE THR ARG ARG ALA ALA LEU ALA GLY SEQRES 21 B 312 LEU ASP VAL ARG LEU HIS VAL TRP ALA ASN MET VAL HIS SEQRES 22 B 312 ALA TRP PRO LEU PHE HIS PHE ALA LEU PRO VAL SER GLY SEQRES 23 B 312 LEU ALA ALA ILE ASP GLU ALA GLY ALA TRP ILE SER ARG SEQRES 24 B 312 GLN LEU GLY GLY HIS LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *197(H2 O) HELIX 1 AA1 ASP A 7 GLN A 25 1 19 HELIX 2 AA2 SER A 28 GLY A 41 1 14 HELIX 3 AA3 SER A 87 GLY A 103 1 17 HELIX 4 AA4 PRO A 120 GLN A 136 1 17 HELIX 5 AA5 LYS A 139 GLU A 141 5 3 HELIX 6 AA6 ALA A 150 GLN A 165 1 16 HELIX 7 AA7 GLY A 186 GLY A 193 1 8 HELIX 8 AA8 PRO A 194 ASP A 196 5 3 HELIX 9 AA9 THR A 200 ALA A 213 1 14 HELIX 10 AB1 SER A 223 ALA A 227 5 5 HELIX 11 AB2 LEU A 245 ALA A 259 1 15 HELIX 12 AB3 ALA A 274 HIS A 279 5 6 HELIX 13 AB4 LEU A 282 LEU A 301 1 20 HELIX 14 AB5 ASP B 7 GLN B 25 1 19 HELIX 15 AB6 SER B 28 GLY B 41 1 14 HELIX 16 AB7 SER B 87 GLY B 103 1 17 HELIX 17 AB8 PRO B 120 GLN B 136 1 17 HELIX 18 AB9 LYS B 139 GLU B 141 5 3 HELIX 19 AC1 SER B 149 GLN B 165 1 17 HELIX 20 AC2 ALA B 187 GLY B 193 1 7 HELIX 21 AC3 PRO B 194 ASP B 196 5 3 HELIX 22 AC4 THR B 200 ALA B 213 1 14 HELIX 23 AC5 SER B 223 ALA B 227 5 5 HELIX 24 AC6 LEU B 245 ALA B 259 1 15 HELIX 25 AC7 ALA B 274 HIS B 279 5 6 HELIX 26 AC8 LEU B 282 LEU B 301 1 20 SHEET 1 AA116 CYS A 49 THR A 56 0 SHEET 2 AA116 VAL A 59 PRO A 66 -1 O THR A 65 N LEU A 50 SHEET 3 AA116 VAL A 104 MET A 109 -1 O ALA A 106 N ILE A 64 SHEET 4 AA116 ASP A 70 PHE A 78 1 N LEU A 75 O TYR A 107 SHEET 5 AA116 ILE A 143 SER A 149 1 O ILE A 144 N ILE A 76 SHEET 6 AA116 GLY A 172 PRO A 178 1 O TYR A 174 N VAL A 145 SHEET 7 AA116 SER A 234 GLY A 240 1 O GLN A 238 N SER A 177 SHEET 8 AA116 VAL A 263 TRP A 268 1 O ARG A 264 N ILE A 237 SHEET 9 AA116 VAL B 263 TRP B 268 -1 O VAL B 267 N VAL A 263 SHEET 10 AA116 SER B 234 GLY B 240 1 N ILE B 237 O ARG B 264 SHEET 11 AA116 GLY B 172 LEU B 176 1 N LEU B 175 O PHE B 236 SHEET 12 AA116 ILE B 143 GLU B 148 1 N VAL B 145 O TYR B 174 SHEET 13 AA116 ASP B 70 PHE B 78 1 N ILE B 76 O ILE B 144 SHEET 14 AA116 VAL B 104 MET B 109 1 O TYR B 107 N LEU B 75 SHEET 15 AA116 VAL B 59 PRO B 66 -1 N ILE B 64 O ALA B 106 SHEET 16 AA116 CYS B 49 THR B 56 -1 N LEU B 50 O THR B 65 CISPEP 1 ALA A 114 PRO A 115 0 3.50 CISPEP 2 TYR A 119 PRO A 120 0 1.17 CISPEP 3 ALA B 114 PRO B 115 0 0.17 CISPEP 4 TYR B 119 PRO B 120 0 4.49 CRYST1 103.800 98.400 75.200 90.00 128.10 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009634 0.000000 0.007554 0.00000 SCALE2 0.000000 0.010163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016898 0.00000