HEADER HYDROLASE 02-DEC-20 7B4Q TITLE STRUCTURE OF A COLD ACTIVE HSL FAMILY ESTERASE REVEALS MECHANISMS OF TITLE 2 LOW TEMPERATURE ADAPTATION AND SUBSTRATE SPECIFICITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS COHNII NBRC 15565; SOURCE 3 ORGANISM_TAXID: 1314751; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACILLUS COHNII, ESTERASE, LOW TEMPERATURE ADAPTED, REGIO-SELECTIVE KEYWDS 2 ESTERASE, HORMONE-SENSITIVE FAMILY, HYDROLASE, LIPASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.D.JONES,N.NOBY,H.AUHIM REVDAT 2 31-JAN-24 7B4Q 1 REMARK REVDAT 1 15-DEC-21 7B4Q 0 JRNL AUTH N.NOBY,H.S.AUHIM,S.WINTER,H.L.WORTHY,A.M.EMBABY,H.SAEED, JRNL AUTH 2 A.HUSSEIN,C.R.PUDNEY,P.J.RIZKALLAH,S.A.WELLS,D.D.JONES JRNL TITL STRUCTURE AND IN SILICO SIMULATIONS OF A COLD-ACTIVE JRNL TITL 2 ESTERASE REVEALS ITS PRIME COLD-ADAPTATION MECHANISM. JRNL REF OPEN BIOLOGY V. 11 10182 2021 JRNL REFN ESSN 2046-2441 JRNL PMID 34847772 JRNL DOI 10.1098/RSOB.210182 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 95500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6897 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 395 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 584 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5145 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4811 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7015 ; 1.766 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11123 ; 1.513 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 652 ; 6.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;33.458 ;22.836 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;13.100 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;21.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5939 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1123 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 314 B 1 314 10174 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6358 33.3895 42.9796 REMARK 3 T TENSOR REMARK 3 T11: 0.0108 T22: 0.0121 REMARK 3 T33: 0.0202 T12: 0.0073 REMARK 3 T13: 0.0072 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.7727 L22: 1.3421 REMARK 3 L33: 1.9147 L12: 0.0618 REMARK 3 L13: -1.1011 L23: 0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: -0.0132 S13: -0.0927 REMARK 3 S21: -0.0079 S22: 0.0089 S23: 0.1325 REMARK 3 S31: 0.1104 S32: 0.0066 S33: 0.0790 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 314 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2899 31.8432 23.7337 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: 0.0859 REMARK 3 T33: 0.0657 T12: 0.0440 REMARK 3 T13: 0.0271 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.7667 L22: 1.5355 REMARK 3 L33: 2.2449 L12: 0.1263 REMARK 3 L13: -0.4889 L23: 0.0541 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: -0.0262 S13: -0.1774 REMARK 3 S21: -0.0696 S22: 0.0010 S23: -0.2152 REMARK 3 S31: 0.2014 S32: 0.3172 S33: 0.0552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7B4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292112466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97629 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100631 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 83.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 2.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LZK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE, 20% (W/V) PEG 6000, PH 5.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.38600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.94150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.94150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.07900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.94150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.94150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.69300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.94150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.94150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 95.07900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.94150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.94150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.69300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.38600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 740 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 315 REMARK 465 VAL A 316 REMARK 465 VAL A 317 REMARK 465 GLU A 318 REMARK 465 ARG A 319 REMARK 465 LYS A 320 REMARK 465 LYS B 315 REMARK 465 VAL B 316 REMARK 465 VAL B 317 REMARK 465 GLU B 318 REMARK 465 ARG B 319 REMARK 465 LYS B 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 576 O HOH A 761 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 760 O HOH B 760 7555 2.11 REMARK 500 O HOH B 639 O HOH B 753 8665 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 GLY A 175 C - N - CA ANGL. DEV. = 14.6 DEGREES REMARK 500 GLY B 175 C - N - CA ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG B 298 CG - CD - NE ANGL. DEV. = 13.5 DEGREES REMARK 500 HIS B 309 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 87 -1.41 77.22 REMARK 500 SER A 157 -118.84 62.62 REMARK 500 SER A 157 -118.96 62.74 REMARK 500 TYR A 185 62.91 34.49 REMARK 500 ILE A 205 -54.80 75.75 REMARK 500 ASP A 227 49.58 -92.71 REMARK 500 TYR A 245 128.76 -37.33 REMARK 500 ASN B 59 71.64 -169.81 REMARK 500 TYR B 87 -1.91 78.27 REMARK 500 SER B 157 -118.72 62.93 REMARK 500 SER B 157 -119.83 65.74 REMARK 500 TYR B 185 63.30 32.40 REMARK 500 ILE B 205 -58.45 79.42 REMARK 500 ASP B 227 33.90 -86.43 REMARK 500 TYR B 245 130.15 -39.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 63 0.08 SIDE CHAIN REMARK 500 TYR A 303 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 532 O REMARK 620 2 HOH A 574 O 84.4 REMARK 620 3 HOH A 576 O 108.0 91.4 REMARK 620 4 HOH A 617 O 91.3 91.0 160.8 REMARK 620 5 HOH A 761 O 171.8 91.5 65.0 95.9 REMARK 620 6 HOH A 806 O 88.2 171.7 94.5 85.4 96.3 REMARK 620 N 1 2 3 4 5 DBREF1 7B4Q A 1 320 UNP A0A2K9UV39_9BACI DBREF2 7B4Q A A0A2K9UV39 1 320 DBREF1 7B4Q B 1 320 UNP A0A2K9UV39_9BACI DBREF2 7B4Q B A0A2K9UV39 1 320 SEQRES 1 A 320 MET LYS ASN ARG ILE ASP PRO GLU LEU ARG ALA MET LEU SEQRES 2 A 320 ASP MET PHE PRO PRO LEU ASN LEU ASP ASP VAL GLN ALA SEQRES 3 A 320 THR ARG LYS ALA MET GLU GLU ALA ALA GLN LEU THR GLU SEQRES 4 A 320 LEU PRO VAL ASP GLU GLU VAL VAL VAL SER ASN ARG MET SEQRES 5 A 320 VAL PRO GLY PRO GLU ASP ASN PRO TYR VAL ARG VAL ARG SEQRES 6 A 320 ILE TYR GLU PRO LYS GLU LYS ILE GLU LYS LEU PRO GLY SEQRES 7 A 320 LEU LEU TRP ILE HIS GLY GLY GLY TYR VAL LEU GLY ALA SEQRES 8 A 320 PRO GLU GLY ASP ASP LEU LEU CYS GLN ARG PHE VAL LYS SEQRES 9 A 320 GLU ALA ASN CYS VAL VAL VAL SER VAL ASP TYR ARG LEU SEQRES 10 A 320 ALA PRO GLU HIS PRO TYR PRO ALA PRO LEU GLU ASP CYS SEQRES 11 A 320 TYR ALA ALA LEU GLN TRP PHE ALA LYS LYS VAL ASP GLU SEQRES 12 A 320 LEU GLY VAL ASP ALA SER ARG ILE GLY VAL GLY GLY GLN SEQRES 13 A 320 SER ALA GLY GLY GLY LEU THR ALA ALA LEU ALA LEU LEU SEQRES 14 A 320 ALA ARG ASP ARG LYS GLY PRO GLU LEU CYS PHE GLN MET SEQRES 15 A 320 PRO LEU TYR PRO MET ILE ASP ASP LYS ASN ASN SER PRO SEQRES 16 A 320 SER SER LEU GLU ILE THR GLY ASN LEU ILE TRP ASN HIS SEQRES 17 A 320 ASP LEU ASN GLU LYS GLY TRP SER MET TYR LEU ASP GLY SEQRES 18 A 320 LYS ASN GLY THR ASP ASP VAL PRO VAL HIS ALA ALA PRO SEQRES 19 A 320 ALA ARG ALA THR ASP LEU THR ASN LEU PRO TYR THR TYR SEQRES 20 A 320 THR CYS VAL GLY GLN LEU ASP PRO PHE ARG ASP GLU THR SEQRES 21 A 320 LEU ASP TYR VAL LYS ARG LEU CYS GLN ALA GLY VAL ASP SEQRES 22 A 320 VAL GLU PHE HIS LEU TYR PRO GLY ALA TYR HIS GLY PHE SEQRES 23 A 320 GLU THR LEU ASN PRO ALA ALA ALA VAL SER GLN ARG ALA SEQRES 24 A 320 LEU ALA GLU TYR VAL GLY ALA VAL LYS HIS VAL LEU ASN SEQRES 25 A 320 ARG GLU LYS VAL VAL GLU ARG LYS SEQRES 1 B 320 MET LYS ASN ARG ILE ASP PRO GLU LEU ARG ALA MET LEU SEQRES 2 B 320 ASP MET PHE PRO PRO LEU ASN LEU ASP ASP VAL GLN ALA SEQRES 3 B 320 THR ARG LYS ALA MET GLU GLU ALA ALA GLN LEU THR GLU SEQRES 4 B 320 LEU PRO VAL ASP GLU GLU VAL VAL VAL SER ASN ARG MET SEQRES 5 B 320 VAL PRO GLY PRO GLU ASP ASN PRO TYR VAL ARG VAL ARG SEQRES 6 B 320 ILE TYR GLU PRO LYS GLU LYS ILE GLU LYS LEU PRO GLY SEQRES 7 B 320 LEU LEU TRP ILE HIS GLY GLY GLY TYR VAL LEU GLY ALA SEQRES 8 B 320 PRO GLU GLY ASP ASP LEU LEU CYS GLN ARG PHE VAL LYS SEQRES 9 B 320 GLU ALA ASN CYS VAL VAL VAL SER VAL ASP TYR ARG LEU SEQRES 10 B 320 ALA PRO GLU HIS PRO TYR PRO ALA PRO LEU GLU ASP CYS SEQRES 11 B 320 TYR ALA ALA LEU GLN TRP PHE ALA LYS LYS VAL ASP GLU SEQRES 12 B 320 LEU GLY VAL ASP ALA SER ARG ILE GLY VAL GLY GLY GLN SEQRES 13 B 320 SER ALA GLY GLY GLY LEU THR ALA ALA LEU ALA LEU LEU SEQRES 14 B 320 ALA ARG ASP ARG LYS GLY PRO GLU LEU CYS PHE GLN MET SEQRES 15 B 320 PRO LEU TYR PRO MET ILE ASP ASP LYS ASN ASN SER PRO SEQRES 16 B 320 SER SER LEU GLU ILE THR GLY ASN LEU ILE TRP ASN HIS SEQRES 17 B 320 ASP LEU ASN GLU LYS GLY TRP SER MET TYR LEU ASP GLY SEQRES 18 B 320 LYS ASN GLY THR ASP ASP VAL PRO VAL HIS ALA ALA PRO SEQRES 19 B 320 ALA ARG ALA THR ASP LEU THR ASN LEU PRO TYR THR TYR SEQRES 20 B 320 THR CYS VAL GLY GLN LEU ASP PRO PHE ARG ASP GLU THR SEQRES 21 B 320 LEU ASP TYR VAL LYS ARG LEU CYS GLN ALA GLY VAL ASP SEQRES 22 B 320 VAL GLU PHE HIS LEU TYR PRO GLY ALA TYR HIS GLY PHE SEQRES 23 B 320 GLU THR LEU ASN PRO ALA ALA ALA VAL SER GLN ARG ALA SEQRES 24 B 320 LEU ALA GLU TYR VAL GLY ALA VAL LYS HIS VAL LEU ASN SEQRES 25 B 320 ARG GLU LYS VAL VAL GLU ARG LYS HET EDO A 401 4 HET GOL A 402 6 HET PEG A 403 7 HET MG A 404 1 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 4 GOL C3 H8 O3 FORMUL 5 PEG C4 H10 O3 FORMUL 6 MG MG 2+ FORMUL 10 HOH *584(H2 O) HELIX 1 AA1 MET A 1 ILE A 5 5 5 HELIX 2 AA2 ASP A 6 GLU A 8 5 3 HELIX 3 AA3 LEU A 9 MET A 15 1 7 HELIX 4 AA4 ASP A 23 THR A 38 1 16 HELIX 5 AA5 ALA A 91 GLY A 94 5 4 HELIX 6 AA6 ASP A 95 ASN A 107 1 13 HELIX 7 AA7 PRO A 124 LYS A 140 1 17 HELIX 8 AA8 LYS A 140 GLY A 145 1 6 HELIX 9 AA9 SER A 157 ARG A 173 1 17 HELIX 10 AB1 SER A 194 ILE A 200 1 7 HELIX 11 AB2 ASN A 207 LEU A 219 1 13 HELIX 12 AB3 ALA A 233 ALA A 237 5 5 HELIX 13 AB4 PHE A 256 ALA A 270 1 15 HELIX 14 AB5 GLY A 285 ASN A 290 1 6 HELIX 15 AB6 ALA A 293 ARG A 313 1 21 HELIX 16 AB7 MET B 1 ILE B 5 5 5 HELIX 17 AB8 ASP B 6 GLU B 8 5 3 HELIX 18 AB9 LEU B 9 PHE B 16 1 8 HELIX 19 AC1 ASP B 23 LEU B 37 1 15 HELIX 20 AC2 ALA B 91 GLY B 94 5 4 HELIX 21 AC3 ASP B 95 ASN B 107 1 13 HELIX 22 AC4 PRO B 124 LYS B 140 1 17 HELIX 23 AC5 LYS B 140 GLY B 145 1 6 HELIX 24 AC6 SER B 157 ARG B 173 1 17 HELIX 25 AC7 SER B 194 ILE B 200 1 7 HELIX 26 AC8 ASN B 207 LEU B 219 1 13 HELIX 27 AC9 ALA B 233 ALA B 237 5 5 HELIX 28 AD1 PHE B 256 ALA B 270 1 15 HELIX 29 AD2 GLY B 285 ASN B 290 1 6 HELIX 30 AD3 ALA B 293 ARG B 313 1 21 SHEET 1 AA1 6 VAL A 46 VAL A 53 0 SHEET 2 AA1 6 VAL A 62 PRO A 69 -1 O ILE A 66 N SER A 49 SHEET 3 AA1 6 VAL A 109 ASP A 114 -1 O SER A 112 N ARG A 65 SHEET 4 AA1 6 LEU A 76 ILE A 82 1 N TRP A 81 O VAL A 111 SHEET 5 AA1 6 VAL A 146 GLN A 156 1 O GLY A 152 N LEU A 80 SHEET 6 AA1 6 PHE A 180 LEU A 184 1 O MET A 182 N VAL A 153 SHEET 1 AA2 4 THR A 246 GLY A 251 0 SHEET 2 AA2 4 VAL A 274 TYR A 279 1 O TYR A 279 N VAL A 250 SHEET 3 AA2 4 VAL B 274 TYR B 279 -1 O LEU B 278 N PHE A 276 SHEET 4 AA2 4 THR B 246 GLY B 251 1 N THR B 246 O GLU B 275 SHEET 1 AA3 6 VAL B 46 PRO B 54 0 SHEET 2 AA3 6 TYR B 61 PRO B 69 -1 O ILE B 66 N SER B 49 SHEET 3 AA3 6 VAL B 109 ASP B 114 -1 O SER B 112 N ARG B 65 SHEET 4 AA3 6 LEU B 76 ILE B 82 1 N TRP B 81 O VAL B 111 SHEET 5 AA3 6 VAL B 146 GLN B 156 1 O GLY B 152 N LEU B 80 SHEET 6 AA3 6 PHE B 180 LEU B 184 1 O MET B 182 N VAL B 153 LINK MG MG A 404 O HOH A 532 1555 1555 2.14 LINK MG MG A 404 O HOH A 574 1555 1555 2.09 LINK MG MG A 404 O HOH A 576 1555 3554 2.11 LINK MG MG A 404 O HOH A 617 1555 1555 2.06 LINK MG MG A 404 O HOH A 761 1555 3554 1.92 LINK MG MG A 404 O HOH A 806 1555 3554 2.04 CISPEP 1 ALA A 118 PRO A 119 0 2.03 CISPEP 2 TYR A 123 PRO A 124 0 5.37 CISPEP 3 ALA B 118 PRO B 119 0 -0.44 CISPEP 4 TYR B 123 PRO B 124 0 5.41 CRYST1 109.883 109.883 126.772 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009101 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007888 0.00000