HEADER DE NOVO PROTEIN 02-DEC-20 7B4T TITLE BROADLY NEUTRALIZING DARPIN BND.1 IN COMPLEX WITH THE HIV-1 ENVELOPE TITLE 2 VARIABLE LOOP 3 CROWN MIMETIC PEPTIDE V3-IF (BG505) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 ENVELOPE VARIABLE LOOP 3 CROWN MIMETIC PEPTIDE V3-IF COMPND 3 (BG505); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BROADLY NEUTRALIZING DARPIN BND.1; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 7 ORGANISM_TAXID: 32630; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV, V3, CONFORMATION, NEUTRALIZATION, DARPINS, ANTIBODIES, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.FRIEDRICH,E.STIEGELER,M.GLOGL,T.LEMMIN,S.HANSEN,C.KADELKA,Y.WU, AUTHOR 2 P.ERNST,L.MALIQI,C.FOULKES,M.MORIN,M.EROGLU,T.LIECHTI,B.IVAN, AUTHOR 3 T.REINBERG,J.SCHAEFER,U.KARAKUS,S.URSPRUNG,A.MANN,P.RUSERT, AUTHOR 4 R.D.KOUYOS,J.A.ROBINSON,H.F.GUNTHARD,A.PLUCKTHUN,A.TRKOLA REVDAT 3 01-MAY-24 7B4T 1 REMARK REVDAT 2 15-JUN-22 7B4T 1 JRNL REVDAT 1 24-NOV-21 7B4T 0 JRNL AUTH N.FRIEDRICH,E.STIEGELER,M.GLOGL,T.LEMMIN,S.HANSEN,C.KADELKA, JRNL AUTH 2 Y.WU,P.ERNST,L.MALIQI,C.FOULKES,M.MORIN,M.EROGLU,T.LIECHTI, JRNL AUTH 3 B.IVAN,T.REINBERG,J.V.SCHAEFER,U.KARAKUS,S.URSPRUNG,A.MANN, JRNL AUTH 4 P.RUSERT,R.D.KOUYOS,J.A.ROBINSON,H.F.GUNTHARD,A.PLUCKTHUN, JRNL AUTH 5 A.TRKOLA JRNL TITL DISTINCT CONFORMATIONS OF THE HIV-1 V3 LOOP CROWN ARE JRNL TITL 2 TARGETABLE FOR BROAD NEUTRALIZATION. JRNL REF NAT COMMUN V. 12 6705 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34795280 JRNL DOI 10.1038/S41467-021-27075-0 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 16381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9250 - 3.5429 0.99 2750 141 0.1752 0.2113 REMARK 3 2 3.5429 - 2.8123 0.99 2586 149 0.2120 0.2471 REMARK 3 3 2.8123 - 2.4569 0.99 2605 124 0.2086 0.2565 REMARK 3 4 2.4569 - 2.2323 0.99 2580 127 0.2322 0.2985 REMARK 3 5 2.2323 - 2.0723 0.98 2531 140 0.2594 0.2938 REMARK 3 6 2.0723 - 1.9501 0.98 2514 134 0.2998 0.3675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1384 REMARK 3 ANGLE : 0.636 1879 REMARK 3 CHIRALITY : 0.040 208 REMARK 3 PLANARITY : 0.004 250 REMARK 3 DIHEDRAL : 16.710 814 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2102 -9.4734 20.0411 REMARK 3 T TENSOR REMARK 3 T11: 0.3125 T22: 0.5600 REMARK 3 T33: 0.5003 T12: -0.0034 REMARK 3 T13: -0.0851 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 5.4372 L22: 7.7958 REMARK 3 L33: 6.0338 L12: 1.6907 REMARK 3 L13: -2.9635 L23: 3.1777 REMARK 3 S TENSOR REMARK 3 S11: -0.2497 S12: -0.4351 S13: -0.2966 REMARK 3 S21: 0.8966 S22: 0.3991 S23: -1.5457 REMARK 3 S31: 0.5105 S32: 1.8588 S33: 0.1443 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5539 -17.4959 -3.7698 REMARK 3 T TENSOR REMARK 3 T11: 0.2150 T22: 0.3577 REMARK 3 T33: 0.2696 T12: -0.0095 REMARK 3 T13: 0.0151 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.9779 L22: 4.0587 REMARK 3 L33: 2.2761 L12: 0.4537 REMARK 3 L13: -0.2921 L23: -0.6096 REMARK 3 S TENSOR REMARK 3 S11: -0.0717 S12: 0.2557 S13: -0.2875 REMARK 3 S21: 0.0645 S22: 0.1550 S23: 0.0572 REMARK 3 S31: 0.1323 S32: 0.0626 S33: -0.1232 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4877 -9.0487 -9.6082 REMARK 3 T TENSOR REMARK 3 T11: 0.3128 T22: 0.3048 REMARK 3 T33: 0.3311 T12: -0.0445 REMARK 3 T13: 0.0001 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 6.4977 L22: 3.9826 REMARK 3 L33: 9.5608 L12: 4.8469 REMARK 3 L13: 2.0794 L23: 2.4067 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: -0.1613 S13: 0.2265 REMARK 3 S21: -0.5689 S22: 0.0238 S23: -0.0174 REMARK 3 S31: -0.5631 S32: 0.2628 S33: -0.0285 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7126 -16.9780 1.7213 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: 0.2773 REMARK 3 T33: 0.2732 T12: -0.0135 REMARK 3 T13: 0.0433 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.6923 L22: 2.3169 REMARK 3 L33: 2.4525 L12: -0.9765 REMARK 3 L13: 2.8633 L23: -0.5940 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: 0.0594 S13: -0.3532 REMARK 3 S21: -0.0266 S22: 0.0310 S23: 0.2842 REMARK 3 S31: 0.1694 S32: 0.0014 S33: -0.0696 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4921 -5.2017 1.0909 REMARK 3 T TENSOR REMARK 3 T11: 0.1891 T22: 0.1767 REMARK 3 T33: 0.2258 T12: -0.0016 REMARK 3 T13: 0.0247 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 6.0763 L22: 4.2473 REMARK 3 L33: 3.4151 L12: 1.8156 REMARK 3 L13: 0.8414 L23: 1.4797 REMARK 3 S TENSOR REMARK 3 S11: -0.2164 S12: -0.1072 S13: 0.3015 REMARK 3 S21: -0.1548 S22: 0.1176 S23: -0.0638 REMARK 3 S31: -0.3131 S32: -0.0181 S33: 0.0726 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2534 -8.9959 11.0766 REMARK 3 T TENSOR REMARK 3 T11: 0.2270 T22: 0.3035 REMARK 3 T33: 0.2691 T12: 0.0234 REMARK 3 T13: -0.0093 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.8907 L22: 1.2621 REMARK 3 L33: 2.3443 L12: 0.3105 REMARK 3 L13: -0.4943 L23: -0.6780 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.2200 S13: 0.1010 REMARK 3 S21: 0.0814 S22: -0.0586 S23: -0.0973 REMARK 3 S31: 0.0409 S32: 0.0433 S33: 0.0536 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8350 2.2302 6.4672 REMARK 3 T TENSOR REMARK 3 T11: 0.3441 T22: 0.2665 REMARK 3 T33: 0.3059 T12: 0.0521 REMARK 3 T13: -0.0541 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 2.8072 L22: 5.9078 REMARK 3 L33: 3.6268 L12: 2.3425 REMARK 3 L13: -0.4750 L23: 3.3067 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: 0.4369 S13: 0.7405 REMARK 3 S21: -0.5914 S22: -0.1804 S23: 0.0626 REMARK 3 S31: -0.9891 S32: -1.0949 S33: 0.2298 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5907 -3.5950 19.7015 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.3329 REMARK 3 T33: 0.2524 T12: -0.0022 REMARK 3 T13: 0.0334 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.6379 L22: 4.2623 REMARK 3 L33: 5.6606 L12: -0.9387 REMARK 3 L13: -0.3646 L23: -0.7129 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.1670 S13: 0.0703 REMARK 3 S21: 0.2631 S22: -0.1499 S23: -0.2311 REMARK 3 S31: -0.1133 S32: 0.0962 S33: 0.0536 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2573 7.5744 16.2226 REMARK 3 T TENSOR REMARK 3 T11: 0.4772 T22: 0.3220 REMARK 3 T33: 0.4042 T12: 0.0606 REMARK 3 T13: 0.0318 T23: -0.0755 REMARK 3 L TENSOR REMARK 3 L11: 2.3308 L22: 5.1862 REMARK 3 L33: 6.7395 L12: 0.9552 REMARK 3 L13: -0.4650 L23: 1.2560 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: 0.1473 S13: 1.5492 REMARK 3 S21: -0.2308 S22: -0.0435 S23: 0.3537 REMARK 3 S31: -1.5667 S32: -0.2628 S33: 0.0479 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8002 -4.0296 28.2782 REMARK 3 T TENSOR REMARK 3 T11: 0.4149 T22: 0.4319 REMARK 3 T33: 0.2794 T12: -0.0232 REMARK 3 T13: 0.0736 T23: -0.1030 REMARK 3 L TENSOR REMARK 3 L11: 2.0907 L22: 5.9144 REMARK 3 L33: 6.8415 L12: 1.1862 REMARK 3 L13: 0.3389 L23: -1.9845 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: -0.7514 S13: -0.0986 REMARK 3 S21: 0.6360 S22: -0.2356 S23: -0.0381 REMARK 3 S31: 0.4822 S32: -0.4383 S33: 0.3333 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5810 3.0806 28.6645 REMARK 3 T TENSOR REMARK 3 T11: 0.4083 T22: 0.3725 REMARK 3 T33: 0.3881 T12: -0.1013 REMARK 3 T13: -0.0550 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 1.5812 L22: 2.3543 REMARK 3 L33: 7.2401 L12: 1.6906 REMARK 3 L13: -0.5581 L23: -2.6097 REMARK 3 S TENSOR REMARK 3 S11: 0.4687 S12: -0.0971 S13: -0.6743 REMARK 3 S21: 0.9751 S22: -0.6303 S23: -0.5613 REMARK 3 S31: -0.4884 S32: 0.9073 S33: 0.2094 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5956 10.4800 28.2139 REMARK 3 T TENSOR REMARK 3 T11: 0.7590 T22: 0.3572 REMARK 3 T33: 0.3372 T12: 0.0063 REMARK 3 T13: 0.0126 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.2224 L22: 6.8371 REMARK 3 L33: 8.3109 L12: -1.4750 REMARK 3 L13: -1.6884 L23: 1.9115 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: 0.2783 S13: 0.7750 REMARK 3 S21: 0.2146 S22: -0.0422 S23: 0.4679 REMARK 3 S31: -1.8367 S32: -0.2625 S33: 0.1494 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7B4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292112414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30369 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 38.925 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.490 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.27 REMARK 200 R MERGE FOR SHELL (I) : 1.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN-HOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 12% W/V PEG REMARK 280 4000, VAPOR DIFFUSION, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.99000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.80500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.80500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.99000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 171 REMARK 465 ASN A 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 LYS B 1 C PRO B 15 1.31 REMARK 500 H2 LYS B 1 O PRO B 15 1.32 REMARK 500 H3 LYS B 1 C PRO B 15 1.43 REMARK 500 HD22 ASN A 45 O HOH A 303 1.55 REMARK 500 N LYS B 1 C PRO B 15 1.67 REMARK 500 O HOH A 310 O HOH A 373 1.84 REMARK 500 O PRO B 7 O HOH B 101 1.99 REMARK 500 O HOH A 308 O HOH A 373 2.00 REMARK 500 O HOH A 343 O HOH A 379 2.11 REMARK 500 N LYS B 1 O PRO B 15 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 355 O HOH A 358 4445 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 2 -127.06 142.06 REMARK 500 ILE B 3 116.71 36.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 7B4T B 1 15 PDB 7B4T 7B4T 1 15 DBREF 7B4T A 9 172 PDB 7B4T 7B4T 9 172 SEQRES 1 B 15 LYS SER ILE ARG ILE GLY PRO GLY GLN ALA PHE TYR ALA SEQRES 2 B 15 DPR PRO SEQRES 1 A 164 GLY PRO GLY SER ASP LEU GLY LYS LYS LEU LEU GLU ALA SEQRES 2 A 164 ALA ARG ALA GLY GLN ASP ASP GLU VAL ARG ILE LEU MET SEQRES 3 A 164 ALA ASN GLY ALA ASP VAL ASN ALA ASP ASP ASN THR GLY SEQRES 4 A 164 GLU THR PRO LEU HIS LEU ALA ALA TYR GLU GLY HIS LEU SEQRES 5 A 164 GLU ILE VAL GLU VAL LEU LEU LYS THR GLY ALA ASP VAL SEQRES 6 A 164 ASN ALA GLU ASP MET MET GLY PHE THR PRO LEU HIS LEU SEQRES 7 A 164 ALA ALA ALA TRP GLY HIS LEU GLU ILE VAL GLU VAL LEU SEQRES 8 A 164 LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP ASN GLN SEQRES 9 A 164 GLY VAL THR PRO LEU HIS LEU ALA ALA TYR GLU GLY HIS SEQRES 10 A 164 LEU GLU PHE VAL GLU VAL LEU LEU LYS HIS GLY ALA ASP SEQRES 11 A 164 VAL ASN ALA GLN ASP LYS PHE GLY LYS THR PRO PHE ASP SEQRES 12 A 164 LEU ALA ILE ASP ASN GLY ASN GLU ASP ILE ALA GLU VAL SEQRES 13 A 164 LEU GLN LYS ALA ALA LYS LEU ASN HET DPR B 14 14 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HETNAM DPR D-PROLINE HETNAM SO4 SULFATE ION FORMUL 1 DPR C5 H9 N O2 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *85(H2 O) HELIX 1 AA1 GLY A 11 GLY A 25 1 15 HELIX 2 AA2 GLN A 26 ASN A 36 1 11 HELIX 3 AA3 THR A 49 GLY A 58 1 10 HELIX 4 AA4 HIS A 59 THR A 69 1 11 HELIX 5 AA5 THR A 82 TRP A 90 1 9 HELIX 6 AA6 HIS A 92 HIS A 102 1 11 HELIX 7 AA7 THR A 115 GLY A 124 1 10 HELIX 8 AA8 HIS A 125 HIS A 135 1 11 HELIX 9 AA9 THR A 148 ASN A 156 1 9 HELIX 10 AB1 ASN A 158 ALA A 169 1 12 LINK C ALA B 13 N DPR B 14 1555 1555 1.34 LINK C DPR B 14 N PRO B 15 1555 1555 1.35 CRYST1 33.980 67.050 95.610 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014914 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010459 0.00000