HEADER VIRAL PROTEIN 07-DEC-20 7B62 TITLE CRYSTAL STRUCTURE OF SARS-COV-2 SPIKE PROTEIN N-TERMINAL DOMAIN IN TITLE 2 COMPLEX WITH BILIVERDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 KEYWDS SARSCOV2, COVID19, BILIVERDIN, CORONAVIRUS, NTD, GREEN, SPIKE, KEYWDS 2 GLYCOPROTEIN, S1, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.E.PYE,A.ROSA,C.ROUSTAN,P.CHEREPANOV REVDAT 4 31-JAN-24 7B62 1 REMARK REVDAT 3 09-JUN-21 7B62 1 JRNL REVDAT 2 05-MAY-21 7B62 1 JRNL REVDAT 1 28-APR-21 7B62 0 JRNL AUTH A.ROSA,V.E.PYE,C.GRAHAM,L.MUIR,J.SEOW,K.W.NG,N.J.COOK, JRNL AUTH 2 C.REES-SPEAR,E.PARKER,M.S.DOS SANTOS,C.ROSADAS,A.SUSANA, JRNL AUTH 3 H.RHYS,A.NANS,L.MASINO,C.ROUSTAN,E.CHRISTODOULOU,R.ULFERTS, JRNL AUTH 4 A.G.WROBEL,C.E.SHORT,M.FERTLEMAN,R.W.SANDERS,J.HEANEY, JRNL AUTH 5 M.SPYER,S.KJAER,A.RIDDELL,M.H.MALIM,R.BEALE,J.I.MACRAE, JRNL AUTH 6 G.P.TAYLOR,E.NASTOULI,M.J.VAN GILS,P.B.ROSENTHAL,M.PIZZATO, JRNL AUTH 7 M.O.MCCLURE,R.S.TEDDER,G.KASSIOTIS,L.E.MCCOY,K.J.DOORES, JRNL AUTH 8 P.CHEREPANOV JRNL TITL SARS-COV-2 CAN RECRUIT A HEME METABOLITE TO EVADE ANTIBODY JRNL TITL 2 IMMUNITY. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 33888467 JRNL DOI 10.1126/SCIADV.ABG7607 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4_4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0900 - 4.3900 0.99 2723 134 0.1471 0.1631 REMARK 3 2 4.3800 - 3.4800 1.00 2674 108 0.1245 0.1439 REMARK 3 3 3.4800 - 3.0400 0.99 2574 154 0.1585 0.1892 REMARK 3 4 3.0400 - 2.7600 1.00 2605 141 0.1611 0.2010 REMARK 3 5 2.7600 - 2.5700 1.00 2590 137 0.1673 0.2261 REMARK 3 6 2.5700 - 2.4100 1.00 2557 151 0.1653 0.2194 REMARK 3 7 2.4100 - 2.2900 1.00 2576 147 0.1539 0.2209 REMARK 3 8 2.2900 - 2.1900 0.98 2502 134 0.1692 0.2299 REMARK 3 9 2.1900 - 2.1100 1.00 2570 142 0.1729 0.1938 REMARK 3 10 2.1100 - 2.0400 1.00 2575 139 0.1993 0.2480 REMARK 3 11 2.0400 - 1.9700 1.00 2528 142 0.2241 0.2688 REMARK 3 12 1.9700 - 1.9200 0.99 2544 135 0.2408 0.2565 REMARK 3 13 1.9200 - 1.8700 1.00 2567 138 0.2788 0.3168 REMARK 3 14 1.8700 - 1.8200 0.98 2537 115 0.3642 0.4082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.234 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.029 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2820 REMARK 3 ANGLE : 0.978 3820 REMARK 3 CHIRALITY : 0.070 426 REMARK 3 PLANARITY : 0.009 503 REMARK 3 DIHEDRAL : 13.636 1088 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 14:66) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8987 5.8332 -12.5869 REMARK 3 T TENSOR REMARK 3 T11: 0.2682 T22: 0.2592 REMARK 3 T33: 0.2653 T12: -0.0020 REMARK 3 T13: -0.0415 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.1671 L22: 1.6642 REMARK 3 L33: 0.0317 L12: 0.2036 REMARK 3 L13: -0.3252 L23: -0.2055 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: 0.0154 S13: -0.0245 REMARK 3 S21: 0.1475 S22: 0.0170 S23: -0.1849 REMARK 3 S31: 0.0026 S32: 0.0719 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 67:129) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1029 19.3584 -15.9334 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.1842 REMARK 3 T33: 0.1936 T12: -0.0287 REMARK 3 T13: -0.0031 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.3527 L22: 1.6324 REMARK 3 L33: 1.0699 L12: 0.1678 REMARK 3 L13: 0.0591 L23: -0.1011 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.0247 S13: -0.0351 REMARK 3 S21: 0.0789 S22: -0.0174 S23: -0.1182 REMARK 3 S31: -0.1080 S32: 0.1345 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 130:134) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4916 23.8951 -30.8434 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.3377 REMARK 3 T33: 0.3000 T12: -0.0384 REMARK 3 T13: 0.0790 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0352 L22: 0.0374 REMARK 3 L33: 0.0182 L12: 0.0261 REMARK 3 L13: 0.0013 L23: 0.0228 REMARK 3 S TENSOR REMARK 3 S11: 0.1427 S12: 0.3730 S13: 0.2176 REMARK 3 S21: -0.3008 S22: 0.1271 S23: -0.2429 REMARK 3 S31: -0.2825 S32: -0.0319 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 135:268) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1344 19.9136 -16.0268 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.1867 REMARK 3 T33: 0.1523 T12: -0.0118 REMARK 3 T13: -0.0062 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.8228 L22: 2.2017 REMARK 3 L33: 1.1373 L12: 0.2067 REMARK 3 L13: 0.0311 L23: -0.0520 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: -0.0112 S13: 0.0303 REMARK 3 S21: 0.0092 S22: 0.0119 S23: 0.0658 REMARK 3 S31: -0.0492 S32: -0.0449 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 269:319) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2514 -16.1795 -12.3102 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.2457 REMARK 3 T33: 0.2779 T12: -0.0039 REMARK 3 T13: -0.0036 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.6268 L22: 0.8655 REMARK 3 L33: 0.4626 L12: 0.1119 REMARK 3 L13: 0.3705 L23: -0.0362 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: -0.1467 S13: -0.1130 REMARK 3 S21: 0.1135 S22: -0.0642 S23: -0.1154 REMARK 3 S31: 0.2503 S32: -0.0704 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7B62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292112628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.40700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZGE REMARK 200 REMARK 200 REMARK: GREEN PLATE-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350 (W/V) AND 0.25 M NASCN, REMARK 280 PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.03500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.09500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.03500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.09500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.98500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.03500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.09500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.98500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.03500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.09500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1650 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 VAL A 3 REMARK 465 PHE A 4 REMARK 465 LEU A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLN A 320 REMARK 465 GLY A 321 REMARK 465 PRO A 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 20 0.44 81.34 REMARK 500 PHE A 32 -129.05 51.66 REMARK 500 PHE A 79 76.36 -150.37 REMARK 500 ASN A 87 -128.34 51.99 REMARK 500 ASN A 87 -125.65 47.06 REMARK 500 THR A 108 -83.13 -119.14 REMARK 500 ALA A 123 -25.90 90.64 REMARK 500 ARG A 158 63.57 -119.14 REMARK 500 ASN A 211 78.51 -155.23 REMARK 500 ASP A 215 -175.62 69.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1751 DISTANCE = 6.27 ANGSTROMS DBREF 7B62 A 1 311 UNP P0DTC2 SPIKE_SARS2 1 311 SEQADV 7B62 SER A 312 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 SER A 313 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 GLY A 314 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 LEU A 315 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 GLU A 316 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 VAL A 317 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 LEU A 318 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 PHE A 319 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 GLN A 320 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 GLY A 321 UNP P0DTC2 EXPRESSION TAG SEQADV 7B62 PRO A 322 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 322 MET PHE VAL PHE LEU VAL LEU LEU PRO LEU VAL SER SER SEQRES 2 A 322 GLN CYS VAL ASN LEU THR THR ARG THR GLN LEU PRO PRO SEQRES 3 A 322 ALA TYR THR ASN SER PHE THR ARG GLY VAL TYR TYR PRO SEQRES 4 A 322 ASP LYS VAL PHE ARG SER SER VAL LEU HIS SER THR GLN SEQRES 5 A 322 ASP LEU PHE LEU PRO PHE PHE SER ASN VAL THR TRP PHE SEQRES 6 A 322 HIS ALA ILE HIS VAL SER GLY THR ASN GLY THR LYS ARG SEQRES 7 A 322 PHE ASP ASN PRO VAL LEU PRO PHE ASN ASP GLY VAL TYR SEQRES 8 A 322 PHE ALA SER THR GLU LYS SER ASN ILE ILE ARG GLY TRP SEQRES 9 A 322 ILE PHE GLY THR THR LEU ASP SER LYS THR GLN SER LEU SEQRES 10 A 322 LEU ILE VAL ASN ASN ALA THR ASN VAL VAL ILE LYS VAL SEQRES 11 A 322 CYS GLU PHE GLN PHE CYS ASN ASP PRO PHE LEU GLY VAL SEQRES 12 A 322 TYR TYR HIS LYS ASN ASN LYS SER TRP MET GLU SER GLU SEQRES 13 A 322 PHE ARG VAL TYR SER SER ALA ASN ASN CYS THR PHE GLU SEQRES 14 A 322 TYR VAL SER GLN PRO PHE LEU MET ASP LEU GLU GLY LYS SEQRES 15 A 322 GLN GLY ASN PHE LYS ASN LEU ARG GLU PHE VAL PHE LYS SEQRES 16 A 322 ASN ILE ASP GLY TYR PHE LYS ILE TYR SER LYS HIS THR SEQRES 17 A 322 PRO ILE ASN LEU VAL ARG ASP LEU PRO GLN GLY PHE SER SEQRES 18 A 322 ALA LEU GLU PRO LEU VAL ASP LEU PRO ILE GLY ILE ASN SEQRES 19 A 322 ILE THR ARG PHE GLN THR LEU LEU ALA LEU HIS ARG SER SEQRES 20 A 322 TYR LEU THR PRO GLY ASP SER SER SER GLY TRP THR ALA SEQRES 21 A 322 GLY ALA ALA ALA TYR TYR VAL GLY TYR LEU GLN PRO ARG SEQRES 22 A 322 THR PHE LEU LEU LYS TYR ASN GLU ASN GLY THR ILE THR SEQRES 23 A 322 ASP ALA VAL ASP CYS ALA LEU ASP PRO LEU SER GLU THR SEQRES 24 A 322 LYS CYS THR LEU LYS SER PHE THR VAL GLU LYS GLY SER SEQRES 25 A 322 SER GLY LEU GLU VAL LEU PHE GLN GLY PRO HET BLA A1301 43 HET NAG A1302 14 HET NAG A1303 14 HET NAG A1304 14 HET NAG A1305 14 HET NAG A1306 14 HET NAG A1307 14 HET NAG A1308 14 HET PG4 A1309 13 HET PG4 A1310 13 HET PEG A1311 7 HET PEG A1312 7 HET PEG A1313 7 HET PGE A1314 10 HET PGE A1315 10 HET PGE A1316 10 HET 1PE A1317 16 HETNAM BLA BILIVERDINE IX ALPHA HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 1PE PEG400 FORMUL 2 BLA C33 H34 N4 O6 FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 10 PG4 2(C8 H18 O5) FORMUL 12 PEG 3(C4 H10 O3) FORMUL 15 PGE 3(C6 H14 O4) FORMUL 18 1PE C10 H22 O6 FORMUL 19 HOH *351(H2 O) HELIX 1 AA1 ASP A 294 LYS A 304 1 11 HELIX 2 AA2 GLY A 314 LEU A 318 5 5 SHEET 1 AA1 3 ALA A 27 ASN A 30 0 SHEET 2 AA1 3 ASN A 61 HIS A 69 -1 O TRP A 64 N ALA A 27 SHEET 3 AA1 3 LYS A 77 PHE A 79 -1 O ARG A 78 N ILE A 68 SHEET 1 AA2 7 ALA A 27 ASN A 30 0 SHEET 2 AA2 7 ASN A 61 HIS A 69 -1 O TRP A 64 N ALA A 27 SHEET 3 AA2 7 ALA A 263 TYR A 269 -1 O TYR A 265 N PHE A 65 SHEET 4 AA2 7 VAL A 90 GLU A 96 -1 N TYR A 91 O GLY A 268 SHEET 5 AA2 7 PHE A 186 ILE A 197 -1 O PHE A 192 N PHE A 92 SHEET 6 AA2 7 TYR A 200 LEU A 212 -1 O LYS A 202 N LYS A 195 SHEET 7 AA2 7 GLU A 224 PRO A 230 -1 O LEU A 229 N PHE A 201 SHEET 1 AA3 3 VAL A 47 PHE A 55 0 SHEET 2 AA3 3 GLN A 271 TYR A 279 -1 O LEU A 277 N HIS A 49 SHEET 3 AA3 3 ILE A 285 ASP A 290 -1 O ASP A 287 N LYS A 278 SHEET 1 AA4 6 VAL A 83 PRO A 85 0 SHEET 2 AA4 6 ARG A 237 ARG A 246 -1 O PHE A 238 N LEU A 84 SHEET 3 AA4 6 ILE A 101 GLY A 107 -1 N ARG A 102 O LEU A 241 SHEET 4 AA4 6 SER A 116 ASN A 121 -1 O LEU A 117 N PHE A 106 SHEET 5 AA4 6 VAL A 126 HIS A 146 -1 O LYS A 129 N LEU A 118 SHEET 6 AA4 6 SER A 151 VAL A 171 -1 O TYR A 170 N ILE A 128 SHEET 1 AA5 4 VAL A 83 PRO A 85 0 SHEET 2 AA5 4 ARG A 237 ARG A 246 -1 O PHE A 238 N LEU A 84 SHEET 3 AA5 4 VAL A 126 HIS A 146 1 N LEU A 141 O LEU A 244 SHEET 4 AA5 4 SER A 151 VAL A 171 -1 O TYR A 170 N ILE A 128 SSBOND 1 CYS A 15 CYS A 136 1555 1555 2.06 SSBOND 2 CYS A 131 CYS A 166 1555 1555 2.06 SSBOND 3 CYS A 291 CYS A 301 1555 1555 2.03 LINK ND2 ASN A 17 C1 NAG A1302 1555 1555 1.43 LINK ND2 ASN A 61 C1 NAG A1303 1555 1555 1.44 LINK ND2 ASN A 122 C1 NAG A1304 1555 1555 1.44 LINK ND2 ASN A 149 C1 NAG A1305 1555 1555 1.45 LINK ND2 ASN A 165 C1 NAG A1306 1555 1555 1.43 LINK ND2 ASN A 234 C1 NAG A1307 1555 1555 1.45 LINK ND2 ASN A 282 C1 NAG A1308 1555 1555 1.45 CRYST1 98.070 100.190 85.970 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011632 0.00000