HEADER HYDROLASE 07-DEC-20 7B67 TITLE STRUCTURE OF NUDT15 V18_V19INSGV MUTANT IN COMPLEX WITH TH7755 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOTIDE TRIPHOSPHATE DIPHOSPHATASE NUDT15; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MUTT HOMOLOG 2,MTH2,NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X COMPND 5 MOTIF 15,NUDIX MOTIF 15,NUCLEOSIDE DIPHOSPHATE-LINKED TO ANOTHER COMPND 6 MOIETY X HYDROLASE 15,NUDIX HYDROLASE 15; COMPND 7 EC: 3.6.1.9; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT15, MTH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, COMPLEX, NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.REHLING,P.STENMARK REVDAT 5 31-JAN-24 7B67 1 REMARK REVDAT 4 21-JUL-21 7B67 1 JRNL REVDAT 3 07-APR-21 7B67 1 JRNL REVDAT 2 31-MAR-21 7B67 1 JRNL REVDAT 1 24-MAR-21 7B67 0 JRNL AUTH D.REHLING,S.M.ZHANG,A.S.JEMTH,T.KOOLMEISTER,A.THROUP, JRNL AUTH 2 O.WALLNER,E.SCALETTI,T.MORIYAMA,R.NISHII,J.DAVIES, JRNL AUTH 3 M.DESROSES,S.G.RUDD,M.SCOBIE,E.HOMAN,U.W.BERGLUND,J.J.YANG, JRNL AUTH 4 T.HELLEDAY,P.STENMARK JRNL TITL CRYSTAL STRUCTURES OF NUDT15 VARIANTS ENABLED BY A POTENT JRNL TITL 2 INHIBITOR REVEAL THE STRUCTURAL BASIS FOR THIOPURINE JRNL TITL 3 SENSITIVITY. JRNL REF J.BIOL.CHEM. V. 296 00568 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33753169 JRNL DOI 10.1016/J.JBC.2021.100568 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 61083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.268 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4326 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.35700 REMARK 3 B22 (A**2) : 1.17300 REMARK 3 B33 (A**2) : 0.40900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.43300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.258 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2753 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2408 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3768 ; 1.863 ; 1.660 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5630 ; 1.472 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 335 ; 7.422 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;30.410 ;23.630 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;11.666 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.044 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 309 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3121 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 582 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 511 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 45 ; 0.276 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1302 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 282 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.215 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 1.881 ; 1.885 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1293 ; 1.881 ; 1.884 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1627 ; 2.714 ; 2.824 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1628 ; 2.714 ; 2.824 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1458 ; 2.926 ; 2.251 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1459 ; 2.925 ; 2.251 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2135 ; 4.592 ; 3.233 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2136 ; 4.591 ; 3.233 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7B67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292112727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61265 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 60.073 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 31.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M SPG PH 5.0, 22.25% PEG 1500, REMARK 280 0.01 M SODIUM PHOSPHATE, 2.75% 1,2 PROPANDIOL, 1.0% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.85500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMER REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMER REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 LEU B 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 324 O HOH B 430 1.98 REMARK 500 OE2 GLU A 153 O HOH A 301 2.04 REMARK 500 O HOH B 387 O HOH B 419 2.05 REMARK 500 O HOH A 375 O HOH A 455 2.09 REMARK 500 O HOH A 352 O HOH A 500 2.15 REMARK 500 O HOH A 426 O HOH A 460 2.16 REMARK 500 NH1 ARG A 29 O HOH A 302 2.17 REMARK 500 O HOH B 371 O HOH B 462 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 24 CA SER A 24 CB -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 39 -156.23 -178.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 515 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 65 OE1 REMARK 620 2 GLU A 69 OE2 69.5 REMARK 620 3 PO4 A 202 O3 79.1 140.2 REMARK 620 4 HOH A 348 O 146.7 88.9 129.4 REMARK 620 5 HOH A 389 O 79.1 102.1 95.1 81.3 REMARK 620 6 HOH A 397 O 109.2 87.5 80.1 94.3 169.2 REMARK 620 N 1 2 3 4 5 DBREF 7B67 A 1 166 UNP Q9NV35 NUD15_HUMAN 1 164 DBREF 7B67 B 1 166 UNP Q9NV35 NUD15_HUMAN 1 164 SEQADV 7B67 GLY A 19 UNP Q9NV35 INSERTION SEQADV 7B67 VAL A 20 UNP Q9NV35 INSERTION SEQADV 7B67 GLY B 19 UNP Q9NV35 INSERTION SEQADV 7B67 VAL B 20 UNP Q9NV35 INSERTION SEQRES 1 A 166 MET THR ALA SER ALA GLN PRO ARG GLY ARG ARG PRO GLY SEQRES 2 A 166 VAL GLY VAL GLY VAL GLY VAL VAL VAL THR SER CYS LYS SEQRES 3 A 166 HIS PRO ARG CYS VAL LEU LEU GLY LYS ARG LYS GLY SER SEQRES 4 A 166 VAL GLY ALA GLY SER PHE GLN LEU PRO GLY GLY HIS LEU SEQRES 5 A 166 GLU PHE GLY GLU THR TRP GLU GLU CYS ALA GLN ARG GLU SEQRES 6 A 166 THR TRP GLU GLU ALA ALA LEU HIS LEU LYS ASN VAL HIS SEQRES 7 A 166 PHE ALA SER VAL VAL ASN SER PHE ILE GLU LYS GLU ASN SEQRES 8 A 166 TYR HIS TYR VAL THR ILE LEU MET LYS GLY GLU VAL ASP SEQRES 9 A 166 VAL THR HIS ASP SER GLU PRO LYS ASN VAL GLU PRO GLU SEQRES 10 A 166 LYS ASN GLU SER TRP GLU TRP VAL PRO TRP GLU GLU LEU SEQRES 11 A 166 PRO PRO LEU ASP GLN LEU PHE TRP GLY LEU ARG CYS LEU SEQRES 12 A 166 LYS GLU GLN GLY TYR ASP PRO PHE LYS GLU ASP LEU ASN SEQRES 13 A 166 HIS LEU VAL GLY TYR LYS GLY ASN HIS LEU SEQRES 1 B 166 MET THR ALA SER ALA GLN PRO ARG GLY ARG ARG PRO GLY SEQRES 2 B 166 VAL GLY VAL GLY VAL GLY VAL VAL VAL THR SER CYS LYS SEQRES 3 B 166 HIS PRO ARG CYS VAL LEU LEU GLY LYS ARG LYS GLY SER SEQRES 4 B 166 VAL GLY ALA GLY SER PHE GLN LEU PRO GLY GLY HIS LEU SEQRES 5 B 166 GLU PHE GLY GLU THR TRP GLU GLU CYS ALA GLN ARG GLU SEQRES 6 B 166 THR TRP GLU GLU ALA ALA LEU HIS LEU LYS ASN VAL HIS SEQRES 7 B 166 PHE ALA SER VAL VAL ASN SER PHE ILE GLU LYS GLU ASN SEQRES 8 B 166 TYR HIS TYR VAL THR ILE LEU MET LYS GLY GLU VAL ASP SEQRES 9 B 166 VAL THR HIS ASP SER GLU PRO LYS ASN VAL GLU PRO GLU SEQRES 10 B 166 LYS ASN GLU SER TRP GLU TRP VAL PRO TRP GLU GLU LEU SEQRES 11 B 166 PRO PRO LEU ASP GLN LEU PHE TRP GLY LEU ARG CYS LEU SEQRES 12 B 166 LYS GLU GLN GLY TYR ASP PRO PHE LYS GLU ASP LEU ASN SEQRES 13 B 166 HIS LEU VAL GLY TYR LYS GLY ASN HIS LEU HET SYW A 201 32 HET PO4 A 202 5 HET MG A 203 1 HET SYW B 201 32 HETNAM SYW (R)-6-((2-METHYL-4-(1-METHYL-1H-INDOLE-5-CARBONYL) HETNAM 2 SYW PIPERAZIN-1-YL)SULFONYL)BENZO[D]OXAZOL-2(3H)-ONE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETSYN SYW 6-[(2~{R})-2-METHYL-4-(1-METHYLINDOL-5-YL)CARBONYL- HETSYN 2 SYW PIPERAZIN-1-YL]SULFONYL-3~{H}-1,3-BENZOXAZOL-2-ONE; HETSYN 3 SYW TH7755 FORMUL 3 SYW 2(C22 H22 N4 O5 S) FORMUL 4 PO4 O4 P 3- FORMUL 5 MG MG 2+ FORMUL 7 HOH *404(H2 O) HELIX 1 AA1 THR A 57 ALA A 71 1 15 HELIX 2 AA2 GLU A 88 ASN A 91 5 4 HELIX 3 AA3 GLU A 128 LEU A 130 5 3 HELIX 4 AA4 PRO A 132 LEU A 136 5 5 HELIX 5 AA5 PHE A 137 GLN A 146 1 10 HELIX 6 AA6 LEU A 155 VAL A 159 5 5 HELIX 7 AA7 THR B 57 ALA B 71 1 15 HELIX 8 AA8 GLU B 88 ASN B 91 5 4 HELIX 9 AA9 GLU B 128 LEU B 130 5 3 HELIX 10 AB1 PRO B 132 LEU B 136 5 5 HELIX 11 AB2 PHE B 137 GLN B 146 1 10 HELIX 12 AB3 LEU B 155 VAL B 159 5 5 SHEET 1 AA1 4 GLY A 49 HIS A 51 0 SHEET 2 AA1 4 GLY A 15 THR A 23 -1 N VAL A 18 O GLY A 50 SHEET 3 AA1 4 TYR A 92 VAL A 103 1 O ILE A 97 N GLY A 19 SHEET 4 AA1 4 LEU A 74 ILE A 87 -1 N HIS A 78 O LYS A 100 SHEET 1 AA2 3 PHE A 45 GLN A 46 0 SHEET 2 AA2 3 CYS A 30 ARG A 36 -1 N GLY A 34 O GLN A 46 SHEET 3 AA2 3 ASN A 119 PRO A 126 -1 O GLU A 120 N LYS A 35 SHEET 1 AA3 4 GLY B 49 HIS B 51 0 SHEET 2 AA3 4 GLY B 15 THR B 23 -1 N VAL B 18 O GLY B 50 SHEET 3 AA3 4 TYR B 92 VAL B 103 1 O MET B 99 N VAL B 21 SHEET 4 AA3 4 LEU B 74 ILE B 87 -1 N SER B 81 O LEU B 98 SHEET 1 AA4 3 PHE B 45 GLN B 46 0 SHEET 2 AA4 3 CYS B 30 ARG B 36 -1 N GLY B 34 O GLN B 46 SHEET 3 AA4 3 ASN B 119 PRO B 126 -1 O GLU B 120 N LYS B 35 LINK OE1 GLU A 65 MG MG A 203 1555 1555 2.59 LINK OE2 GLU A 69 MG MG A 203 1555 1555 2.40 LINK O3 PO4 A 202 MG MG A 203 1555 1555 2.49 LINK MG MG A 203 O HOH A 348 1555 1555 2.13 LINK MG MG A 203 O HOH A 389 1555 1555 2.34 LINK MG MG A 203 O HOH A 397 1555 1555 2.68 CRYST1 63.431 45.710 66.339 90.00 115.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015765 0.000000 0.007386 0.00000 SCALE2 0.000000 0.021877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016646 0.00000