HEADER HYDROLASE 11-DEC-20 7B7V TITLE STRUCTURE OF NUDT15 IN COMPLEX WITH ACYCLOVIR MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 8-OXO-DGTP DIPHOSPHATASE NUDT15; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 8-OXO-DGTPASE NUDT15,7,8-DIHYDRO-8-OXOGUANINE-TRIPHOSPHATASE COMPND 5 NUDT15,MUTT HOMOLOG 2,MTH2,NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X COMPND 6 MOTIF 15,NUDIX MOTIF 15; COMPND 7 EC: 3.6.1.9; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT15, MTH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE, COMPLEX, ANTIVIRAL KEYWDS 2 HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.REHLING,P.STENMARK REVDAT 3 31-JAN-24 7B7V 1 REMARK REVDAT 2 21-JUL-21 7B7V 1 JRNL REVDAT 1 19-MAY-21 7B7V 0 JRNL AUTH R.NISHII,T.MIZUNO,D.REHLING,C.SMITH,B.L.CLARK,X.ZHAO, JRNL AUTH 2 S.A.BROWN,B.SMART,T.MORIYAMA,Y.YAMADA,T.ICHINOHE,M.ONIZUKA, JRNL AUTH 3 Y.ATSUTA,L.YANG,W.YANG,P.G.THOMAS,P.STENMARK,M.KATO,J.J.YANG JRNL TITL NUDT15 POLYMORPHISM INFLUENCES THE METABOLISM AND JRNL TITL 2 THERAPEUTIC EFFECTS OF ACYCLOVIR AND GANCICLOVIR. JRNL REF NAT COMMUN V. 12 4181 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34234136 JRNL DOI 10.1038/S41467-021-24509-7 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 41614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0900 - 3.9500 0.98 2789 164 0.1572 0.1740 REMARK 3 2 3.9400 - 3.1300 1.00 2722 119 0.1696 0.1686 REMARK 3 3 3.1300 - 2.7400 1.00 2681 133 0.1887 0.2156 REMARK 3 4 2.7400 - 2.4900 1.00 2695 108 0.1965 0.2157 REMARK 3 5 2.4900 - 2.3100 1.00 2662 139 0.2054 0.2346 REMARK 3 6 2.3100 - 2.1700 1.00 2619 151 0.2041 0.2456 REMARK 3 7 2.1700 - 2.0600 1.00 2644 121 0.1980 0.2425 REMARK 3 8 2.0600 - 1.9700 1.00 2613 147 0.2017 0.2179 REMARK 3 9 1.9700 - 1.9000 1.00 2625 144 0.2137 0.2422 REMARK 3 10 1.9000 - 1.8300 1.00 2621 130 0.2272 0.2542 REMARK 3 11 1.8300 - 1.7700 1.00 2577 168 0.2301 0.2687 REMARK 3 12 1.7700 - 1.7200 0.99 2542 165 0.2385 0.2730 REMARK 3 13 1.7200 - 1.6800 0.98 2567 150 0.2438 0.2892 REMARK 3 14 1.6800 - 1.6400 0.99 2569 139 0.2514 0.2692 REMARK 3 15 1.6400 - 1.6000 0.98 2604 106 0.2718 0.2416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.176 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2699 REMARK 3 ANGLE : 1.452 3682 REMARK 3 CHIRALITY : 0.103 363 REMARK 3 PLANARITY : 0.009 480 REMARK 3 DIHEDRAL : 15.628 974 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 11:34) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9298 -6.2179 21.3523 REMARK 3 T TENSOR REMARK 3 T11: 0.2239 T22: 0.1560 REMARK 3 T33: 0.1684 T12: 0.0325 REMARK 3 T13: 0.0062 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.4957 L22: 0.8335 REMARK 3 L33: 1.6909 L12: 0.3808 REMARK 3 L13: 0.8091 L23: -0.7735 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: 0.0792 S13: 0.0811 REMARK 3 S21: -0.0910 S22: 0.0937 S23: -0.1035 REMARK 3 S31: -0.5097 S32: 0.1137 S33: -0.0042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 35:104) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5200 -13.8513 21.3175 REMARK 3 T TENSOR REMARK 3 T11: 0.1685 T22: 0.1657 REMARK 3 T33: 0.2128 T12: 0.0509 REMARK 3 T13: 0.0290 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 3.0947 L22: 2.3626 REMARK 3 L33: 1.7289 L12: 1.3833 REMARK 3 L13: 1.6324 L23: 0.3861 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: 0.1434 S13: -0.2397 REMARK 3 S21: -0.0460 S22: 0.1613 S23: -0.3224 REMARK 3 S31: -0.1017 S32: 0.2178 S33: 0.0210 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 105:139) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2446 -3.5845 19.2273 REMARK 3 T TENSOR REMARK 3 T11: 0.3382 T22: 0.2647 REMARK 3 T33: 0.2894 T12: -0.0419 REMARK 3 T13: 0.0152 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.8570 L22: 0.9445 REMARK 3 L33: 0.9789 L12: 0.5090 REMARK 3 L13: 0.4542 L23: 0.3850 REMARK 3 S TENSOR REMARK 3 S11: -0.1927 S12: 0.0919 S13: 0.1045 REMARK 3 S21: -0.2040 S22: 0.2839 S23: -0.3044 REMARK 3 S31: -0.6111 S32: 0.3373 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 140:164) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3140 -8.1761 12.5435 REMARK 3 T TENSOR REMARK 3 T11: 0.3607 T22: 0.2567 REMARK 3 T33: 0.2559 T12: 0.0833 REMARK 3 T13: -0.0194 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 1.2399 L22: 1.2965 REMARK 3 L33: 0.6043 L12: 0.7784 REMARK 3 L13: 0.5235 L23: -0.2933 REMARK 3 S TENSOR REMARK 3 S11: -0.1847 S12: 0.1420 S13: 0.1190 REMARK 3 S21: -0.3553 S22: 0.1065 S23: 0.1587 REMARK 3 S31: -0.4667 S32: -0.0140 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 10:54) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1059 -31.5248 12.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.2589 T22: 0.3041 REMARK 3 T33: 0.2397 T12: -0.0340 REMARK 3 T13: -0.0639 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 1.7316 L22: 2.3587 REMARK 3 L33: 3.3529 L12: 0.8338 REMARK 3 L13: 0.3667 L23: 1.8726 REMARK 3 S TENSOR REMARK 3 S11: 0.3856 S12: -0.2688 S13: -0.3268 REMARK 3 S21: 0.1705 S22: -0.0830 S23: -0.1831 REMARK 3 S31: 0.6026 S32: -0.5770 S33: 0.0517 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 55:104) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8604 -27.1958 10.5253 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.1911 REMARK 3 T33: 0.2193 T12: 0.0474 REMARK 3 T13: -0.0135 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.0457 L22: 2.0296 REMARK 3 L33: 1.7874 L12: 1.3653 REMARK 3 L13: 0.9084 L23: 1.5345 REMARK 3 S TENSOR REMARK 3 S11: 0.1228 S12: 0.0653 S13: -0.2328 REMARK 3 S21: -0.1132 S22: 0.0434 S23: -0.1346 REMARK 3 S31: 0.1707 S32: -0.2299 S33: 0.0176 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 105:135) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7702 -35.6958 12.2975 REMARK 3 T TENSOR REMARK 3 T11: 0.3801 T22: 0.5904 REMARK 3 T33: 0.3463 T12: -0.2837 REMARK 3 T13: -0.1050 T23: 0.1178 REMARK 3 L TENSOR REMARK 3 L11: 1.6676 L22: 1.3216 REMARK 3 L33: 2.3046 L12: -0.2734 REMARK 3 L13: 0.8913 L23: -1.0098 REMARK 3 S TENSOR REMARK 3 S11: 0.6971 S12: -0.7108 S13: -0.3913 REMARK 3 S21: 0.0188 S22: -0.3521 S23: 0.2621 REMARK 3 S31: 0.9762 S32: -1.2219 S33: 0.3873 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 136:164) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9771 -21.6677 22.0125 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.5354 REMARK 3 T33: 0.2653 T12: 0.0420 REMARK 3 T13: 0.0277 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.4885 L22: 0.7316 REMARK 3 L33: 2.9213 L12: 0.9820 REMARK 3 L13: 1.0407 L23: 1.1434 REMARK 3 S TENSOR REMARK 3 S11: 0.3399 S12: -0.6417 S13: -0.1676 REMARK 3 S21: 0.1777 S22: -0.4572 S23: 0.1512 REMARK 3 S31: 0.2781 S32: -1.5997 S33: 0.0301 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7B7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292112917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 0.2 M MGCL2, 34% PEG REMARK 280 4000 IN A 1:2 RATIO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.32150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.61000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.61000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.32150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMER REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMER REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 PRO B 7 REMARK 465 ARG B 8 REMARK 465 GLY B 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 27 -4.99 69.39 REMARK 500 SER A 37 -135.74 -141.15 REMARK 500 GLU A 113 73.43 -118.66 REMARK 500 SER B 37 -156.01 -139.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 432 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 47 O REMARK 620 2 GLU A 67 OE2 86.0 REMARK 620 3 HOH A 329 O 88.9 90.0 REMARK 620 4 HOH A 354 O 89.2 90.0 178.1 REMARK 620 5 HOH A 362 O 174.5 88.8 89.1 92.8 REMARK 620 6 HOH A 367 O 93.7 176.9 86.9 93.1 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 307 O REMARK 620 2 HOH A 313 O 84.4 REMARK 620 3 HOH A 335 O 176.1 92.6 REMARK 620 4 HOH A 342 O 91.3 80.7 90.6 REMARK 620 5 HOH A 415 O 90.0 82.1 87.1 162.5 REMARK 620 6 HOH B 397 O 92.1 170.2 91.3 90.3 107.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 47 O REMARK 620 2 GLU B 67 OE2 85.0 REMARK 620 3 HOH B 310 O 85.0 88.1 REMARK 620 4 HOH B 349 O 175.2 92.0 91.2 REMARK 620 5 HOH B 359 O 92.8 176.9 89.6 90.0 REMARK 620 6 HOH B 367 O 89.3 90.1 174.1 94.5 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 306 O REMARK 620 2 HOH B 307 O 95.4 REMARK 620 3 HOH B 324 O 90.5 89.4 REMARK 620 4 HOH B 331 O 175.8 82.6 85.8 REMARK 620 5 HOH B 340 O 88.4 92.1 178.3 95.3 REMARK 620 6 HOH B 383 O 81.1 176.4 91.5 100.9 87.0 REMARK 620 N 1 2 3 4 5 DBREF 7B7V A 1 164 UNP Q9NV35 NUD15_HUMAN 1 164 DBREF 7B7V B 1 164 UNP Q9NV35 NUD15_HUMAN 1 164 SEQRES 1 A 164 MET THR ALA SER ALA GLN PRO ARG GLY ARG ARG PRO GLY SEQRES 2 A 164 VAL GLY VAL GLY VAL VAL VAL THR SER CYS LYS HIS PRO SEQRES 3 A 164 ARG CYS VAL LEU LEU GLY LYS ARG LYS GLY SER VAL GLY SEQRES 4 A 164 ALA GLY SER PHE GLN LEU PRO GLY GLY HIS LEU GLU PHE SEQRES 5 A 164 GLY GLU THR TRP GLU GLU CYS ALA GLN ARG GLU THR TRP SEQRES 6 A 164 GLU GLU ALA ALA LEU HIS LEU LYS ASN VAL HIS PHE ALA SEQRES 7 A 164 SER VAL VAL ASN SER PHE ILE GLU LYS GLU ASN TYR HIS SEQRES 8 A 164 TYR VAL THR ILE LEU MET LYS GLY GLU VAL ASP VAL THR SEQRES 9 A 164 HIS ASP SER GLU PRO LYS ASN VAL GLU PRO GLU LYS ASN SEQRES 10 A 164 GLU SER TRP GLU TRP VAL PRO TRP GLU GLU LEU PRO PRO SEQRES 11 A 164 LEU ASP GLN LEU PHE TRP GLY LEU ARG CYS LEU LYS GLU SEQRES 12 A 164 GLN GLY TYR ASP PRO PHE LYS GLU ASP LEU ASN HIS LEU SEQRES 13 A 164 VAL GLY TYR LYS GLY ASN HIS LEU SEQRES 1 B 164 MET THR ALA SER ALA GLN PRO ARG GLY ARG ARG PRO GLY SEQRES 2 B 164 VAL GLY VAL GLY VAL VAL VAL THR SER CYS LYS HIS PRO SEQRES 3 B 164 ARG CYS VAL LEU LEU GLY LYS ARG LYS GLY SER VAL GLY SEQRES 4 B 164 ALA GLY SER PHE GLN LEU PRO GLY GLY HIS LEU GLU PHE SEQRES 5 B 164 GLY GLU THR TRP GLU GLU CYS ALA GLN ARG GLU THR TRP SEQRES 6 B 164 GLU GLU ALA ALA LEU HIS LEU LYS ASN VAL HIS PHE ALA SEQRES 7 B 164 SER VAL VAL ASN SER PHE ILE GLU LYS GLU ASN TYR HIS SEQRES 8 B 164 TYR VAL THR ILE LEU MET LYS GLY GLU VAL ASP VAL THR SEQRES 9 B 164 HIS ASP SER GLU PRO LYS ASN VAL GLU PRO GLU LYS ASN SEQRES 10 B 164 GLU SER TRP GLU TRP VAL PRO TRP GLU GLU LEU PRO PRO SEQRES 11 B 164 LEU ASP GLN LEU PHE TRP GLY LEU ARG CYS LEU LYS GLU SEQRES 12 B 164 GLN GLY TYR ASP PRO PHE LYS GLU ASP LEU ASN HIS LEU SEQRES 13 B 164 VAL GLY TYR LYS GLY ASN HIS LEU HET 4DG A 201 20 HET MG A 202 1 HET MG A 203 1 HET CL A 204 1 HET 4DG B 201 20 HET MG B 202 1 HET MG B 203 1 HET CL B 204 1 HETNAM 4DG 2-[(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL) HETNAM 2 4DG METHOXY]ETHYL DIHYDROGEN PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN 4DG ACYCLIC GUANOSINE MONOPHOSPHATE; ACYCLOVIR HETSYN 2 4DG MONOPHOSPHATE FORMUL 3 4DG 2(C8 H12 N5 O6 P) FORMUL 4 MG 4(MG 2+) FORMUL 6 CL 2(CL 1-) FORMUL 11 HOH *233(H2 O) HELIX 1 AA1 THR A 55 ALA A 69 1 15 HELIX 2 AA2 GLU A 86 ASN A 89 5 4 HELIX 3 AA3 GLU A 126 LEU A 128 5 3 HELIX 4 AA4 PRO A 130 LEU A 134 5 5 HELIX 5 AA5 PHE A 135 GLN A 144 1 10 HELIX 6 AA6 LEU A 153 VAL A 157 5 5 HELIX 7 AA7 THR B 55 ALA B 69 1 15 HELIX 8 AA8 GLU B 86 ASN B 89 5 4 HELIX 9 AA9 GLU B 126 LEU B 128 5 3 HELIX 10 AB1 PRO B 130 LEU B 134 5 5 HELIX 11 AB2 PHE B 135 GLN B 144 1 10 HELIX 12 AB3 LEU B 153 VAL B 157 5 5 SHEET 1 AA1 4 GLY A 47 HIS A 49 0 SHEET 2 AA1 4 GLY A 13 THR A 21 -1 N VAL A 16 O GLY A 48 SHEET 3 AA1 4 TYR A 90 VAL A 101 1 O MET A 97 N VAL A 19 SHEET 4 AA1 4 LEU A 72 ILE A 85 -1 N SER A 83 O TYR A 92 SHEET 1 AA2 3 PHE A 43 GLN A 44 0 SHEET 2 AA2 3 CYS A 28 ARG A 34 -1 N GLY A 32 O GLN A 44 SHEET 3 AA2 3 ASN A 117 PRO A 124 -1 O VAL A 123 N VAL A 29 SHEET 1 AA3 4 GLY B 47 HIS B 49 0 SHEET 2 AA3 4 GLY B 13 THR B 21 -1 N VAL B 16 O GLY B 48 SHEET 3 AA3 4 TYR B 90 VAL B 101 1 O MET B 97 N VAL B 19 SHEET 4 AA3 4 LEU B 72 ILE B 85 -1 N SER B 83 O TYR B 92 SHEET 1 AA4 3 PHE B 43 GLN B 44 0 SHEET 2 AA4 3 CYS B 28 ARG B 34 -1 N GLY B 32 O GLN B 44 SHEET 3 AA4 3 ASN B 117 PRO B 124 -1 O GLU B 121 N LEU B 31 LINK O GLY A 47 MG MG A 202 1555 1555 2.05 LINK OE2 GLU A 67 MG MG A 202 1555 1555 2.09 LINK MG MG A 202 O HOH A 329 1555 1555 2.16 LINK MG MG A 202 O HOH A 354 1555 1555 2.16 LINK MG MG A 202 O HOH A 362 1555 1555 2.14 LINK MG MG A 202 O HOH A 367 1555 1555 2.15 LINK MG MG A 203 O HOH A 307 1555 1555 2.17 LINK MG MG A 203 O HOH A 313 1555 1555 2.15 LINK MG MG A 203 O HOH A 335 1555 1555 2.15 LINK MG MG A 203 O HOH A 342 1555 1555 2.23 LINK MG MG A 203 O HOH A 415 1555 1555 2.15 LINK MG MG A 203 O HOH B 397 1555 1555 2.16 LINK O GLY B 47 MG MG B 202 1555 1555 2.13 LINK OE2 GLU B 67 MG MG B 202 1555 1555 2.09 LINK MG MG B 202 O HOH B 310 1555 1555 2.18 LINK MG MG B 202 O HOH B 349 1555 1555 2.19 LINK MG MG B 202 O HOH B 359 1555 1555 2.19 LINK MG MG B 202 O HOH B 367 1555 1555 2.16 LINK MG MG B 203 O HOH B 306 1555 1555 2.18 LINK MG MG B 203 O HOH B 307 1555 1555 2.13 LINK MG MG B 203 O HOH B 324 1555 1555 2.14 LINK MG MG B 203 O HOH B 331 1555 1555 2.17 LINK MG MG B 203 O HOH B 340 1555 1555 2.26 LINK MG MG B 203 O HOH B 383 1555 1555 2.16 CRYST1 46.643 49.120 135.220 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007395 0.00000