HEADER IMMUNE SYSTEM 15-DEC-20 7BAI TITLE STRUCTURE OF RIG-I CTD (I875A) BOUND TO P-RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIVIRAL INNATE IMMUNE RESPONSE RECEPTOR RIG-I; COMPND 3 CHAIN: A, B, E; COMPND 4 SYNONYM: DEAD BOX PROTEIN 58,PROBABLE ATP-DEPENDENT RNA HELICASE COMPND 5 DDX58,RIG-I-LIKE RECEPTOR 1,RLR-1,RETINOIC ACID-INDUCIBLE GENE 1 COMPND 6 PROTEIN,RIG-1,RETINOIC ACID-INDUCIBLE GENE I PROTEIN,RIG-I; COMPND 7 EC: 3.6.4.13; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THIS IS THE I875A MUTANT OF RIG-I; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3'); COMPND 12 CHAIN: C, D, V; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX58; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS RNA RECOGNITION, INNATE IMMUNITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.ANAND,G.HAGELUEKEN,D.FUSSHOELLER,M.GEYER REVDAT 2 31-JAN-24 7BAI 1 REMARK REVDAT 1 12-JAN-22 7BAI 0 JRNL AUTH A.K.DE REGT,K.ANAND,K.GATTERDAM,G.HAGELUEKEN,G.HARTMANN, JRNL AUTH 2 M.GEYER,M.SCHLEE JRNL TITL A CONSERVED ISOLEUCINE IN THE RNA SENSOR RIG-I CONTROLS JRNL TITL 2 IMMUNE TOLERANCE TO MITOCHONDRIAL RNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 8971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7200 - 6.1800 1.00 1410 158 0.1854 0.2155 REMARK 3 2 6.1700 - 4.9000 1.00 1362 154 0.2256 0.3157 REMARK 3 3 4.9000 - 4.2800 1.00 1334 147 0.1853 0.2624 REMARK 3 4 4.2800 - 3.8900 1.00 1339 143 0.2403 0.3223 REMARK 3 5 3.8900 - 3.6100 1.00 1316 148 0.3132 0.3698 REMARK 3 6 3.6100 - 3.4000 1.00 726 146 0.4135 0.4797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.690 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3891 REMARK 3 ANGLE : 0.956 5412 REMARK 3 CHIRALITY : 0.055 606 REMARK 3 PLANARITY : 0.005 552 REMARK 3 DIHEDRAL : 14.880 1540 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -21.6677 -16.2101 18.3622 REMARK 3 T TENSOR REMARK 3 T11: 1.1057 T22: 1.2404 REMARK 3 T33: 1.3356 T12: 0.1910 REMARK 3 T13: -0.0493 T23: 0.0637 REMARK 3 L TENSOR REMARK 3 L11: 2.9520 L22: 1.3102 REMARK 3 L33: 3.5106 L12: 1.4628 REMARK 3 L13: -0.8905 L23: -0.1781 REMARK 3 S TENSOR REMARK 3 S11: -0.1204 S12: -0.3094 S13: -0.5512 REMARK 3 S21: -0.0471 S22: -0.1828 S23: -0.4108 REMARK 3 S31: 0.0046 S32: 0.4204 S33: 0.3068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292113035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8984 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NCU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M THIOCYANATE PH 8.4 20% PEG 3350 REMARK 280 10% ETHYLENE GLYCOL 10% MPD, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.18700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.18700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.26150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.56300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.26150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.56300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.18700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.26150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.56300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.18700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.26150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.56300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 799 REMARK 465 ALA A 800 REMARK 465 MET A 801 REMARK 465 ASP A 802 REMARK 465 LYS A 803 REMARK 465 SER A 924 REMARK 465 LYS A 925 REMARK 465 GLY B 799 REMARK 465 ALA B 800 REMARK 465 MET B 801 REMARK 465 MET B 923 REMARK 465 SER B 924 REMARK 465 LYS B 925 REMARK 465 GLY E 799 REMARK 465 ALA E 800 REMARK 465 MET E 801 REMARK 465 ASP E 802 REMARK 465 GLU E 922 REMARK 465 MET E 923 REMARK 465 SER E 924 REMARK 465 LYS E 925 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 875 CG1 CG2 CD1 REMARK 470 GLN B 867 CG CD OE1 NE2 REMARK 470 ILE B 875 CG1 CG2 CD1 REMARK 470 GDP C 1 PB O1B O2B O3B REMARK 470 GDP D 1 PB O1B O2B O3B REMARK 470 LYS E 803 CG CD CE NZ REMARK 470 ILE E 875 CG1 CG2 CD1 REMARK 470 GDP V 1 PB O1B O2B O3B REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS E 807 NZ REMARK 480 LYS E 878 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GDP C 1 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 A C 2 O3' - P - OP2 ANGL. DEV. = -13.8 DEGREES REMARK 500 A C 2 O3' - P - OP1 ANGL. DEV. = 9.9 DEGREES REMARK 500 A D 2 O3' - P - OP1 ANGL. DEV. = 6.8 DEGREES REMARK 500 GDP V 1 C3' - O3' - P ANGL. DEV. = -8.9 DEGREES REMARK 500 A V 2 O3' - P - O5' ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 818 -174.15 -170.75 REMARK 500 CYS A 829 -32.38 -144.09 REMARK 500 SER A 854 -128.95 49.11 REMARK 500 ARG A 866 -2.50 -51.71 REMARK 500 GLN A 867 -82.20 64.16 REMARK 500 ASN A 868 -6.41 -54.38 REMARK 500 CYS A 869 -74.65 -103.10 REMARK 500 LYS A 880 -120.30 54.91 REMARK 500 GLU A 914 97.65 -63.60 REMARK 500 CYS B 818 -169.46 -164.77 REMARK 500 CYS B 829 -34.82 -139.43 REMARK 500 SER B 854 -119.12 49.05 REMARK 500 CYS B 869 -78.71 -120.92 REMARK 500 LYS B 880 -115.56 56.91 REMARK 500 GLU B 914 96.49 -65.54 REMARK 500 CYS E 818 -174.39 -170.29 REMARK 500 CYS E 829 -32.07 -144.66 REMARK 500 SER E 854 -128.59 50.19 REMARK 500 ASN E 868 -7.47 81.96 REMARK 500 CYS E 869 -75.69 -103.98 REMARK 500 LYS E 880 -120.07 54.97 REMARK 500 GLU E 914 96.98 -61.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 810 SG REMARK 620 2 CYS A 813 SG 100.7 REMARK 620 3 CYS A 864 SG 128.7 121.9 REMARK 620 4 CYS A 869 SG 91.1 97.0 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 810 SG REMARK 620 2 CYS B 813 SG 104.3 REMARK 620 3 CYS B 864 SG 103.1 114.9 REMARK 620 4 CYS B 869 SG 88.2 133.5 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 810 SG REMARK 620 2 CYS E 869 SG 92.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 810 SG REMARK 620 2 CYS E 813 SG 125.1 REMARK 620 3 CYS E 869 SG 85.6 109.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN V 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 864 SG REMARK 620 2 CYS E 869 SG 110.2 REMARK 620 3 SER E 870 N 160.8 88.3 REMARK 620 N 1 2 DBREF 7BAI A 802 925 UNP O95786 DDX58_HUMAN 802 925 DBREF 7BAI B 802 925 UNP O95786 DDX58_HUMAN 802 925 DBREF 7BAI C 1 12 PDB 7BAI 7BAI 1 12 DBREF 7BAI D 1 12 PDB 7BAI 7BAI 1 12 DBREF 7BAI E 802 925 UNP O95786 DDX58_HUMAN 802 925 DBREF 7BAI V 1 12 PDB 7BAI 7BAI 1 12 SEQADV 7BAI GLY A 799 UNP O95786 EXPRESSION TAG SEQADV 7BAI ALA A 800 UNP O95786 EXPRESSION TAG SEQADV 7BAI MET A 801 UNP O95786 EXPRESSION TAG SEQADV 7BAI GLY B 799 UNP O95786 EXPRESSION TAG SEQADV 7BAI ALA B 800 UNP O95786 EXPRESSION TAG SEQADV 7BAI MET B 801 UNP O95786 EXPRESSION TAG SEQADV 7BAI GLY E 799 UNP O95786 EXPRESSION TAG SEQADV 7BAI ALA E 800 UNP O95786 EXPRESSION TAG SEQADV 7BAI MET E 801 UNP O95786 EXPRESSION TAG SEQRES 1 A 127 GLY ALA MET ASP LYS GLU ASN LYS LYS LEU LEU CYS ARG SEQRES 2 A 127 LYS CYS LYS ALA LEU ALA CYS TYR THR ALA ASP VAL ARG SEQRES 3 A 127 VAL ILE GLU GLU CYS HIS TYR THR VAL LEU GLY ASP ALA SEQRES 4 A 127 PHE LYS GLU CYS PHE VAL SER ARG PRO HIS PRO LYS PRO SEQRES 5 A 127 LYS GLN PHE SER SER PHE GLU LYS ARG ALA LYS ILE PHE SEQRES 6 A 127 CYS ALA ARG GLN ASN CYS SER HIS ASP TRP GLY ILE HIS SEQRES 7 A 127 VAL LYS TYR LYS THR PHE GLU ILE PRO VAL ILE LYS ILE SEQRES 8 A 127 GLU SER PHE VAL VAL GLU ASP ILE ALA THR GLY VAL GLN SEQRES 9 A 127 THR LEU TYR SER LYS TRP LYS ASP PHE HIS PHE GLU LYS SEQRES 10 A 127 ILE PRO PHE ASP PRO ALA GLU MET SER LYS SEQRES 1 B 127 GLY ALA MET ASP LYS GLU ASN LYS LYS LEU LEU CYS ARG SEQRES 2 B 127 LYS CYS LYS ALA LEU ALA CYS TYR THR ALA ASP VAL ARG SEQRES 3 B 127 VAL ILE GLU GLU CYS HIS TYR THR VAL LEU GLY ASP ALA SEQRES 4 B 127 PHE LYS GLU CYS PHE VAL SER ARG PRO HIS PRO LYS PRO SEQRES 5 B 127 LYS GLN PHE SER SER PHE GLU LYS ARG ALA LYS ILE PHE SEQRES 6 B 127 CYS ALA ARG GLN ASN CYS SER HIS ASP TRP GLY ILE HIS SEQRES 7 B 127 VAL LYS TYR LYS THR PHE GLU ILE PRO VAL ILE LYS ILE SEQRES 8 B 127 GLU SER PHE VAL VAL GLU ASP ILE ALA THR GLY VAL GLN SEQRES 9 B 127 THR LEU TYR SER LYS TRP LYS ASP PHE HIS PHE GLU LYS SEQRES 10 B 127 ILE PRO PHE ASP PRO ALA GLU MET SER LYS SEQRES 1 C 12 GDP A C G C U A G C G U C SEQRES 1 D 12 GDP A C G C U A G C G U C SEQRES 1 E 127 GLY ALA MET ASP LYS GLU ASN LYS LYS LEU LEU CYS ARG SEQRES 2 E 127 LYS CYS LYS ALA LEU ALA CYS TYR THR ALA ASP VAL ARG SEQRES 3 E 127 VAL ILE GLU GLU CYS HIS TYR THR VAL LEU GLY ASP ALA SEQRES 4 E 127 PHE LYS GLU CYS PHE VAL SER ARG PRO HIS PRO LYS PRO SEQRES 5 E 127 LYS GLN PHE SER SER PHE GLU LYS ARG ALA LYS ILE PHE SEQRES 6 E 127 CYS ALA ARG GLN ASN CYS SER HIS ASP TRP GLY ILE HIS SEQRES 7 E 127 VAL LYS TYR LYS THR PHE GLU ILE PRO VAL ILE LYS ILE SEQRES 8 E 127 GLU SER PHE VAL VAL GLU ASP ILE ALA THR GLY VAL GLN SEQRES 9 E 127 THR LEU TYR SER LYS TRP LYS ASP PHE HIS PHE GLU LYS SEQRES 10 E 127 ILE PRO PHE ASP PRO ALA GLU MET SER LYS SEQRES 1 V 12 GDP A C G C U A G C G U C HET GDP C 1 24 HET GDP D 1 24 HET GDP V 1 24 HET ZN A1001 1 HET ZN B1001 1 HET ZN E1001 1 HET ZN E1002 1 HET ZN V 101 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 GDP 3(C10 H15 N5 O11 P2) FORMUL 7 ZN 5(ZN 2+) HELIX 1 AA1 GLY A 835 CYS A 841 1 7 HELIX 2 AA2 LYS A 907 PHE A 911 5 5 HELIX 3 AA3 GLY B 835 GLU B 840 1 6 HELIX 4 AA4 LYS B 907 PHE B 911 5 5 HELIX 5 AA5 GLY E 835 CYS E 841 1 7 HELIX 6 AA6 LYS E 907 PHE E 911 5 5 SHEET 1 AA1 4 LEU A 816 TYR A 819 0 SHEET 2 AA1 4 LYS A 806 CYS A 810 -1 N LEU A 808 O ALA A 817 SHEET 3 AA1 4 PHE A 892 ASP A 896 -1 O VAL A 893 N LEU A 809 SHEET 4 AA1 4 GLN A 902 THR A 903 -1 O THR A 903 N VAL A 894 SHEET 1 AA2 2 VAL A 823 ILE A 826 0 SHEET 2 AA2 2 HIS A 830 VAL A 833 -1 O HIS A 830 N ILE A 826 SHEET 1 AA3 4 PHE A 842 PHE A 853 0 SHEET 2 AA3 4 PHE A 856 CYS A 864 -1 O LYS A 861 N ARG A 845 SHEET 3 AA3 4 ASP A 872 TYR A 879 -1 O HIS A 876 N ALA A 860 SHEET 4 AA3 4 PHE A 882 ILE A 887 -1 O VAL A 886 N ILE A 875 SHEET 1 AA4 8 LEU B 816 TYR B 819 0 SHEET 2 AA4 8 LYS B 806 CYS B 810 -1 N LEU B 808 O ALA B 817 SHEET 3 AA4 8 PHE B 892 ASP B 896 -1 O GLU B 895 N LYS B 807 SHEET 4 AA4 8 GLN B 902 LEU B 904 -1 O THR B 903 N VAL B 894 SHEET 5 AA4 8 GLN E 902 LEU E 904 -1 O LEU E 904 N GLN B 902 SHEET 6 AA4 8 PHE E 892 ASP E 896 -1 N VAL E 894 O THR E 903 SHEET 7 AA4 8 LYS E 806 CYS E 810 -1 N LYS E 807 O GLU E 895 SHEET 8 AA4 8 LEU E 816 TYR E 819 -1 O CYS E 818 N LEU E 808 SHEET 1 AA5 2 VAL B 823 ILE B 826 0 SHEET 2 AA5 2 HIS B 830 VAL B 833 -1 O HIS B 830 N ILE B 826 SHEET 1 AA6 3 PHE B 842 PRO B 846 0 SHEET 2 AA6 3 PHE B 856 CYS B 864 -1 O PHE B 863 N VAL B 843 SHEET 3 AA6 3 GLN B 852 PHE B 853 -1 N PHE B 853 O PHE B 856 SHEET 1 AA7 4 PHE B 842 PRO B 846 0 SHEET 2 AA7 4 PHE B 856 CYS B 864 -1 O PHE B 863 N VAL B 843 SHEET 3 AA7 4 ASP B 872 TYR B 879 -1 O HIS B 876 N ALA B 860 SHEET 4 AA7 4 PHE B 882 ILE B 887 -1 O VAL B 886 N ILE B 875 SHEET 1 AA8 2 VAL E 823 ILE E 826 0 SHEET 2 AA8 2 HIS E 830 VAL E 833 -1 O HIS E 830 N ILE E 826 SHEET 1 AA9 4 PHE E 842 PHE E 853 0 SHEET 2 AA9 4 PHE E 856 CYS E 864 -1 O LYS E 861 N ARG E 845 SHEET 3 AA9 4 ASP E 872 TYR E 879 -1 O HIS E 876 N ARG E 859 SHEET 4 AA9 4 PHE E 882 ILE E 887 -1 O VAL E 886 N ILE E 875 LINK O3' GDP C 1 P A C 2 1555 1555 1.56 LINK O3' GDP D 1 P A D 2 1555 1555 1.56 LINK O3' GDP V 1 P A V 2 1555 1555 1.56 LINK SG CYS A 810 ZN ZN A1001 1555 1555 2.57 LINK SG CYS A 813 ZN ZN A1001 1555 1555 2.61 LINK SG CYS A 864 ZN ZN A1001 1555 1555 2.62 LINK SG CYS A 869 ZN ZN A1001 1555 1555 2.25 LINK SG CYS B 810 ZN ZN B1001 1555 1555 2.46 LINK SG CYS B 813 ZN ZN B1001 1555 1555 2.37 LINK SG CYS B 864 ZN ZN B1001 1555 1555 2.42 LINK SG CYS B 869 ZN ZN B1001 1555 1555 2.31 LINK SG CYS E 810 ZN ZN E1001 1555 1555 2.28 LINK SG CYS E 810 ZN ZN E1002 1555 1555 2.66 LINK SG CYS E 813 ZN ZN E1002 1555 1555 2.24 LINK SG CYS E 864 ZN ZN V 101 1555 4555 2.80 LINK SG CYS E 869 ZN ZN E1001 1555 1555 2.56 LINK SG CYS E 869 ZN ZN E1002 1555 1555 2.50 LINK SG CYS E 869 ZN ZN V 101 1555 4555 2.70 LINK N SER E 870 ZN ZN V 101 1555 4555 2.58 CRYST1 84.523 135.126 110.374 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011831 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009060 0.00000