HEADER DE NOVO PROTEIN 16-DEC-20 7BAU TITLE A DE NOVO PENTAMERIC COILED-COIL ASSEMBLY: CC-TYPE2-(TGIAID)4- TITLE 2 W19BRPHE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CC-TYPE2-(TGLAID)4-W19BRPHE.; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS ALPHA, HELICAL, BARREL, PENTAMER, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.J.O.MARTIN,W.M.DAWSON,K.SHELLEY,R.L.BRADY,D.N.WOOLFSON REVDAT 3 31-JAN-24 7BAU 1 REMARK REVDAT 2 17-NOV-21 7BAU 1 JRNL REMARK REVDAT 1 28-APR-21 7BAU 0 JRNL AUTH W.M.DAWSON,F.J.O.MARTIN,G.G.RHYS,K.L.SHELLEY,R.L.BRADY, JRNL AUTH 2 D.N.WOOLFSON JRNL TITL COILED COILS 9-TO-5: RATIONAL DE NOVO DESIGN OF JRNL TITL 2 ALPHA-HELICAL BARRELS WITH TUNABLE OLIGOMERIC STATES. JRNL REF CHEM SCI V. 12 6923 2021 JRNL REFN ISSN 2041-6520 JRNL PMID 34745518 JRNL DOI 10.1039/D1SC00460C REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 42429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2341 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3070 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.512 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2277 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2465 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2983 ; 1.555 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5700 ;11.278 ; 1.597 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 4.447 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;34.540 ;28.361 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;12.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 402 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2202 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 310 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4742 ; 3.171 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 45 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 28 B 2 28 771 0.110 0.050 REMARK 3 2 A 2 28 C 2 28 743 0.160 0.050 REMARK 3 3 A 1 28 D 1 28 759 0.150 0.050 REMARK 3 4 A 1 28 E 1 28 795 0.100 0.050 REMARK 3 5 A 2 28 F 2 28 740 0.160 0.050 REMARK 3 6 A 1 28 G 1 28 795 0.110 0.050 REMARK 3 7 A 1 28 H 1 28 804 0.070 0.050 REMARK 3 8 A 1 28 I 1 28 759 0.140 0.050 REMARK 3 9 A 1 28 J 1 28 795 0.090 0.050 REMARK 3 10 B 2 30 C 2 30 776 0.160 0.050 REMARK 3 11 B 2 29 D 2 29 767 0.170 0.050 REMARK 3 12 B 2 29 E 2 29 789 0.140 0.050 REMARK 3 13 B 2 30 F 2 30 777 0.160 0.050 REMARK 3 14 B 2 29 G 2 29 831 0.080 0.050 REMARK 3 15 B 2 29 H 2 29 800 0.120 0.050 REMARK 3 16 B 2 29 I 2 29 767 0.170 0.050 REMARK 3 17 B 2 29 J 2 29 792 0.130 0.050 REMARK 3 18 C 2 29 D 2 29 813 0.100 0.050 REMARK 3 19 C 2 29 E 2 29 771 0.180 0.050 REMARK 3 20 C 2 30 F 2 30 833 0.070 0.050 REMARK 3 21 C 2 29 G 2 29 763 0.170 0.050 REMARK 3 22 C 2 29 H 2 29 764 0.160 0.050 REMARK 3 23 C 2 29 I 2 29 798 0.120 0.050 REMARK 3 24 C 2 29 J 2 29 768 0.170 0.050 REMARK 3 25 D 1 30 E 1 30 804 0.160 0.050 REMARK 3 26 D 2 29 F 2 29 815 0.070 0.050 REMARK 3 27 D 1 30 G 1 30 795 0.170 0.050 REMARK 3 28 D 1 30 H 1 30 787 0.170 0.050 REMARK 3 29 D 1 30 I 1 30 852 0.070 0.050 REMARK 3 30 D 1 30 J 1 30 798 0.160 0.050 REMARK 3 31 E 2 29 F 2 29 772 0.170 0.050 REMARK 3 32 E 1 30 G 1 30 826 0.140 0.050 REMARK 3 33 E 1 30 H 1 30 829 0.120 0.050 REMARK 3 34 E 1 30 I 1 30 805 0.160 0.050 REMARK 3 35 E 1 30 J 1 30 874 0.060 0.050 REMARK 3 36 F 2 29 G 2 29 778 0.160 0.050 REMARK 3 37 F 2 29 H 2 29 777 0.170 0.050 REMARK 3 38 F 2 29 I 2 29 812 0.110 0.050 REMARK 3 39 F 2 29 J 2 29 781 0.180 0.050 REMARK 3 40 G 1 30 H 1 30 829 0.120 0.050 REMARK 3 41 G 1 30 I 1 30 794 0.170 0.050 REMARK 3 42 G 1 30 J 1 30 827 0.140 0.050 REMARK 3 43 H 1 30 I 1 30 788 0.160 0.050 REMARK 3 44 H 1 30 J 1 30 826 0.120 0.050 REMARK 3 45 I 1 30 J 1 30 800 0.160 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 40.4887 -6.5176 19.4591 REMARK 3 T TENSOR REMARK 3 T11: 0.0269 T22: 0.0459 REMARK 3 T33: 0.0415 T12: -0.0138 REMARK 3 T13: -0.0178 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 15.0762 L22: 1.3532 REMARK 3 L33: 1.2263 L12: -3.2119 REMARK 3 L13: 3.0517 L23: -0.7992 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: 0.0946 S13: -0.1106 REMARK 3 S21: -0.1059 S22: 0.0144 S23: 0.0935 REMARK 3 S31: 0.0932 S32: -0.1206 S33: -0.0320 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6657 2.5295 16.8276 REMARK 3 T TENSOR REMARK 3 T11: 0.0030 T22: 0.0141 REMARK 3 T33: 0.0056 T12: 0.0024 REMARK 3 T13: 0.0004 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 13.5515 L22: 2.7555 REMARK 3 L33: 2.0505 L12: -3.1080 REMARK 3 L13: -0.5469 L23: 0.1585 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 0.1578 S13: 0.0903 REMARK 3 S21: -0.0688 S22: 0.0026 S23: -0.0850 REMARK 3 S31: 0.0213 S32: 0.1142 S33: -0.0326 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 31 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8002 7.1935 24.6159 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0131 REMARK 3 T33: 0.0142 T12: -0.0059 REMARK 3 T13: -0.0060 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 14.7451 L22: 0.5167 REMARK 3 L33: 1.6161 L12: -0.0832 REMARK 3 L13: -3.5725 L23: 0.0988 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: 0.1743 S13: 0.1905 REMARK 3 S21: 0.0135 S22: 0.0038 S23: -0.0361 REMARK 3 S31: -0.1309 S32: 0.0207 S33: -0.0467 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 31 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1443 -7.3129 28.0819 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0200 REMARK 3 T33: 0.0354 T12: 0.0135 REMARK 3 T13: 0.0015 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 14.0323 L22: 1.1490 REMARK 3 L33: 1.2950 L12: 2.4859 REMARK 3 L13: 2.7964 L23: 0.3302 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.3871 S13: -0.1792 REMARK 3 S21: 0.0701 S22: -0.0414 S23: -0.0661 REMARK 3 S31: 0.1128 S32: -0.0121 S33: 0.0016 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 0 E 31 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2948 1.5701 31.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.0085 REMARK 3 T33: 0.0199 T12: 0.0113 REMARK 3 T13: 0.0095 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 15.4483 L22: 1.4906 REMARK 3 L33: 0.7762 L12: 4.4021 REMARK 3 L13: -1.8084 L23: -0.4665 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.0895 S13: -0.0552 REMARK 3 S21: 0.1072 S22: 0.0010 S23: 0.0111 REMARK 3 S31: 0.0094 S32: -0.0364 S33: -0.0391 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2 F 31 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9954 -5.0763 -3.5039 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0142 REMARK 3 T33: 0.0097 T12: -0.0101 REMARK 3 T13: 0.0024 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 14.6019 L22: 0.7880 REMARK 3 L33: 1.5437 L12: 0.3258 REMARK 3 L13: 3.5192 L23: 0.1162 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: 0.2270 S13: -0.2564 REMARK 3 S21: -0.0052 S22: 0.0212 S23: 0.0430 REMARK 3 S31: 0.1355 S32: -0.0123 S33: -0.0505 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 30 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6372 -0.2971 -11.3119 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.0196 REMARK 3 T33: 0.0080 T12: 0.0018 REMARK 3 T13: -0.0013 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 14.3586 L22: 2.6782 REMARK 3 L33: 2.0044 L12: -3.4437 REMARK 3 L13: 0.5607 L23: -0.0996 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.1676 S13: -0.1846 REMARK 3 S21: -0.0732 S22: 0.0192 S23: 0.1210 REMARK 3 S31: -0.0250 S32: -0.1353 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 0 H 30 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1185 8.7987 -8.8353 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0483 REMARK 3 T33: 0.0466 T12: -0.0148 REMARK 3 T13: 0.0095 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 15.0050 L22: 1.1812 REMARK 3 L33: 1.2511 L12: -2.9533 REMARK 3 L13: -3.2569 L23: 0.6891 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.2164 S13: 0.1777 REMARK 3 S21: -0.0973 S22: 0.0040 S23: -0.0942 REMARK 3 S31: -0.0797 S32: 0.0796 S33: -0.0224 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 1 I 31 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2002 9.5124 -0.3070 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: 0.0123 REMARK 3 T33: 0.0381 T12: 0.0085 REMARK 3 T13: -0.0060 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 14.5337 L22: 1.0458 REMARK 3 L33: 1.4456 L12: 2.4151 REMARK 3 L13: -3.0459 L23: -0.3320 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.2949 S13: 0.1376 REMARK 3 S21: 0.0396 S22: -0.0379 S23: 0.0469 REMARK 3 S31: -0.1092 S32: 0.0015 S33: 0.0029 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 0 J 30 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7839 0.5503 3.4419 REMARK 3 T TENSOR REMARK 3 T11: 0.0459 T22: 0.0088 REMARK 3 T33: 0.0169 T12: 0.0111 REMARK 3 T13: -0.0130 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 15.1893 L22: 1.4698 REMARK 3 L33: 0.8514 L12: 4.2869 REMARK 3 L13: 1.5710 L23: 0.6429 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.0019 S13: 0.0747 REMARK 3 S21: 0.0919 S22: 0.0409 S23: -0.0132 REMARK 3 S31: -0.0019 S32: 0.0601 S33: -0.0258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7BAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292111579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42429 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 40.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 40.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.07700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 650 MM PEPTIDE, 1.0 M AMMONIUM FORMATE REMARK 280 50 MM SODIUM HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.72300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 NH2 A 31 REMARK 465 ACE B 0 REMARK 465 GLY B 1 REMARK 465 NH2 B 31 REMARK 465 ACE C 0 REMARK 465 GLY C 1 REMARK 465 ACE D 0 REMARK 465 ACE F 0 REMARK 465 GLY F 1 REMARK 465 ACE G 0 REMARK 465 NH2 G 31 REMARK 465 NH2 H 31 REMARK 465 ACE I 0 REMARK 465 NH2 J 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CE NZ REMARK 470 LYS A 12 CD CE NZ REMARK 470 LYS A 15 CE NZ REMARK 470 LYS A 22 CD CE NZ REMARK 470 LYS B 8 CE NZ REMARK 470 GLU C 2 OE1 OE2 REMARK 470 LYS C 29 CG CD CE NZ REMARK 470 LYS D 29 CE NZ REMARK 470 LYS E 29 CE NZ REMARK 470 LYS F 29 CG CD CE NZ REMARK 470 GLN H 26 CG CD OE1 NE2 REMARK 470 GLY H 30 CA C O REMARK 470 GLU I 9 CG CD OE1 OE2 REMARK 470 LYS J 15 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS E 29 -18.32 -143.45 REMARK 500 LYS J 29 -17.39 -144.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 113 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A 114 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH C 120 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH C 121 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH D 116 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH E 123 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH E 124 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH F 119 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH F 120 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH F 121 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH G 114 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH H 115 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH I 117 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH J 127 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH J 128 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH J 129 DISTANCE = 7.09 ANGSTROMS DBREF 7BAU A 0 31 PDB 7BAU 7BAU 0 31 DBREF 7BAU B 0 31 PDB 7BAU 7BAU 0 31 DBREF 7BAU C 0 31 PDB 7BAU 7BAU 0 31 DBREF 7BAU D 0 31 PDB 7BAU 7BAU 0 31 DBREF 7BAU E 0 31 PDB 7BAU 7BAU 0 31 DBREF 7BAU F 0 31 PDB 7BAU 7BAU 0 31 DBREF 7BAU G 0 31 PDB 7BAU 7BAU 0 31 DBREF 7BAU H 0 31 PDB 7BAU 7BAU 0 31 DBREF 7BAU I 0 31 PDB 7BAU 7BAU 0 31 DBREF 7BAU J 0 31 PDB 7BAU 7BAU 0 31 SEQRES 1 A 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 A 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 A 32 GLN THR ILE LYS GLY NH2 SEQRES 1 B 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 B 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 B 32 GLN THR ILE LYS GLY NH2 SEQRES 1 C 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 C 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 C 32 GLN THR ILE LYS GLY NH2 SEQRES 1 D 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 D 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 D 32 GLN THR ILE LYS GLY NH2 SEQRES 1 E 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 E 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 E 32 GLN THR ILE LYS GLY NH2 SEQRES 1 F 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 F 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 F 32 GLN THR ILE LYS GLY NH2 SEQRES 1 G 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 G 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 G 32 GLN THR ILE LYS GLY NH2 SEQRES 1 H 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 H 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 H 32 GLN THR ILE LYS GLY NH2 SEQRES 1 I 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 I 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 I 32 GLN THR ILE LYS GLY NH2 SEQRES 1 J 32 ACE GLY GLU ILE ALA GLN THR ILE LYS GLU ILE ALA LYS SEQRES 2 J 32 THR ILE LYS GLU ILE ALA 4BF THR ILE LYS GLU ILE ALA SEQRES 3 J 32 GLN THR ILE LYS GLY NH2 HET ACE A 0 3 HET 4BF A 19 12 HET 4BF B 19 12 HET 4BF C 19 12 HET NH2 C 31 1 HET 4BF D 19 12 HET NH2 D 31 1 HET ACE E 0 3 HET 4BF E 19 12 HET NH2 E 31 1 HET 4BF F 19 12 HET NH2 F 31 1 HET 4BF G 19 12 HET ACE H 0 3 HET 4BF H 19 12 HET 4BF I 19 12 HET NH2 I 31 1 HET ACE J 0 3 HET 4BF J 19 12 HETNAM ACE ACETYL GROUP HETNAM 4BF 4-BROMO-L-PHENYLALANINE HETNAM NH2 AMINO GROUP HETSYN 4BF P-BROMO-L-PHENYLALANINE FORMUL 1 ACE 4(C2 H4 O) FORMUL 1 4BF 10(C9 H10 BR N O2) FORMUL 3 NH2 5(H2 N) FORMUL 11 HOH *184(H2 O) HELIX 1 AA1 GLY A 1 LYS A 29 1 29 HELIX 2 AA2 ILE B 3 GLY B 30 1 28 HELIX 3 AA3 ILE C 3 LYS C 29 1 27 HELIX 4 AA4 GLU D 2 LYS D 29 1 28 HELIX 5 AA5 GLY E 1 GLY E 30 1 30 HELIX 6 AA6 ILE F 3 LYS F 29 1 27 HELIX 7 AA7 GLU G 2 GLY G 30 1 29 HELIX 8 AA8 GLY H 1 LYS H 29 1 29 HELIX 9 AA9 GLU I 2 LYS I 29 1 28 HELIX 10 AB1 GLY J 1 GLY J 30 1 30 LINK C ACE A 0 N GLY A 1 1555 1555 1.33 LINK C ALA A 18 N 4BF A 19 1555 1555 1.30 LINK C 4BF A 19 N THR A 20 1555 1555 1.30 LINK C ALA B 18 N 4BF B 19 1555 1555 1.30 LINK C 4BF B 19 N THR B 20 1555 1555 1.30 LINK C ALA C 18 N 4BF C 19 1555 1555 1.31 LINK C 4BF C 19 N THR C 20 1555 1555 1.29 LINK C GLY C 30 N NH2 C 31 1555 1555 1.28 LINK C ALA D 18 N 4BF D 19 1555 1555 1.31 LINK C 4BF D 19 N THR D 20 1555 1555 1.30 LINK C GLY D 30 N NH2 D 31 1555 1555 1.28 LINK C ACE E 0 N GLY E 1 1555 1555 1.33 LINK C ALA E 18 N 4BF E 19 1555 1555 1.29 LINK C 4BF E 19 N THR E 20 1555 1555 1.27 LINK C GLY E 30 N NH2 E 31 1555 1555 1.27 LINK C ALA F 18 N 4BF F 19 1555 1555 1.30 LINK C 4BF F 19 N THR F 20 1555 1555 1.30 LINK C GLY F 30 N NH2 F 31 1555 1555 1.27 LINK C ALA G 18 N 4BF G 19 1555 1555 1.31 LINK C 4BF G 19 N THR G 20 1555 1555 1.31 LINK C ACE H 0 N GLY H 1 1555 1555 1.31 LINK C ALA H 18 N 4BF H 19 1555 1555 1.31 LINK C 4BF H 19 N THR H 20 1555 1555 1.31 LINK C ALA I 18 N 4BF I 19 1555 1555 1.31 LINK C 4BF I 19 N THR I 20 1555 1555 1.31 LINK C GLY I 30 N NH2 I 31 1555 1555 1.28 LINK C ACE J 0 N GLY J 1 1555 1555 1.32 LINK C ALA J 18 N 4BF J 19 1555 1555 1.30 LINK C 4BF J 19 N THR J 20 1555 1555 1.26 CRYST1 40.597 53.446 56.156 90.00 90.00 90.00 P 1 21 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024632 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017808 0.00000 HETATM 1 C ACE A 0 59.579 -14.407 22.139 1.00 15.41 C ANISOU 1 C ACE A 0 1002 2001 2851 -171 120 -177 C HETATM 2 O ACE A 0 59.226 -15.088 23.059 1.00 14.61 O ANISOU 2 O ACE A 0 725 2078 2747 122 -27 -23 O HETATM 3 CH3 ACE A 0 59.287 -14.762 20.668 1.00 17.07 C ANISOU 3 CH3 ACE A 0 1003 2466 3017 -151 21 -525 C