data_7BBB # _entry.id 7BBB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7BBB pdb_00007bbb 10.2210/pdb7bbb/pdb WWPDB D_1292103734 ? ? BMRB 34584 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB 'Chemical shift assignments' 50356 unspecified BMRB 'Solution structure of C-terminal RecA and RRM domains of the DEAD box helicase DbpA' 34584 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7BBB _pdbx_database_status.recvd_initial_deposition_date 2020-12-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wurm, J.P.' 1 0000-0003-0985-7273 'Sprangers, R.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 118 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural basis for the activation of the DEAD-box RNA helicase DbpA by the nascent ribosome.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2105961118 _citation.pdbx_database_id_PubMed 34453003 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wurm, J.P.' 1 0000-0003-0985-7273 primary 'Glowacz, K.A.' 2 ? primary 'Sprangers, R.' 3 0000-0001-7323-6047 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7BBB _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'ATP-dependent RNA helicase DbpA' _entity.formula_weight 27014.055 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.6.4.13 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Two nonnative glycine residues were introduced at the N-terminus during the cloning procedure' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVR FANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW QTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKI KGKTCRVRLLK ; _entity_poly.pdbx_seq_one_letter_code_can ;GGSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVR FANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW QTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKI KGKTCRVRLLK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 SER n 1 4 THR n 1 5 ASP n 1 6 ALA n 1 7 LEU n 1 8 PRO n 1 9 PRO n 1 10 ILE n 1 11 GLU n 1 12 GLN n 1 13 GLN n 1 14 PHE n 1 15 TYR n 1 16 GLU n 1 17 THR n 1 18 SER n 1 19 SER n 1 20 LYS n 1 21 GLY n 1 22 LYS n 1 23 ILE n 1 24 PRO n 1 25 LEU n 1 26 LEU n 1 27 GLN n 1 28 ARG n 1 29 LEU n 1 30 LEU n 1 31 SER n 1 32 LEU n 1 33 HIS n 1 34 GLN n 1 35 PRO n 1 36 SER n 1 37 SER n 1 38 CYS n 1 39 VAL n 1 40 VAL n 1 41 PHE n 1 42 CYS n 1 43 ASN n 1 44 THR n 1 45 LYS n 1 46 LYS n 1 47 ASP n 1 48 CYS n 1 49 GLN n 1 50 ALA n 1 51 VAL n 1 52 CYS n 1 53 ASP n 1 54 ALA n 1 55 LEU n 1 56 ASN n 1 57 GLU n 1 58 VAL n 1 59 GLY n 1 60 GLN n 1 61 SER n 1 62 ALA n 1 63 LEU n 1 64 SER n 1 65 LEU n 1 66 HIS n 1 67 GLY n 1 68 ASP n 1 69 LEU n 1 70 GLU n 1 71 GLN n 1 72 ARG n 1 73 ASP n 1 74 ARG n 1 75 ASP n 1 76 GLN n 1 77 THR n 1 78 LEU n 1 79 VAL n 1 80 ARG n 1 81 PHE n 1 82 ALA n 1 83 ASN n 1 84 GLY n 1 85 SER n 1 86 ALA n 1 87 ARG n 1 88 VAL n 1 89 LEU n 1 90 VAL n 1 91 ALA n 1 92 THR n 1 93 ASP n 1 94 VAL n 1 95 ALA n 1 96 ALA n 1 97 ARG n 1 98 GLY n 1 99 LEU n 1 100 ASP n 1 101 ILE n 1 102 LYS n 1 103 SER n 1 104 LEU n 1 105 GLU n 1 106 LEU n 1 107 VAL n 1 108 VAL n 1 109 ASN n 1 110 PHE n 1 111 GLU n 1 112 LEU n 1 113 ALA n 1 114 TRP n 1 115 ASP n 1 116 PRO n 1 117 GLU n 1 118 VAL n 1 119 HIS n 1 120 VAL n 1 121 HIS n 1 122 ARG n 1 123 ILE n 1 124 GLY n 1 125 ARG n 1 126 THR n 1 127 ALA n 1 128 ARG n 1 129 ALA n 1 130 GLY n 1 131 ASN n 1 132 SER n 1 133 GLY n 1 134 LEU n 1 135 ALA n 1 136 ILE n 1 137 SER n 1 138 PHE n 1 139 CYS n 1 140 ALA n 1 141 PRO n 1 142 GLU n 1 143 GLU n 1 144 ALA n 1 145 GLN n 1 146 ARG n 1 147 ALA n 1 148 ASN n 1 149 ILE n 1 150 ILE n 1 151 SER n 1 152 ASP n 1 153 MET n 1 154 LEU n 1 155 GLN n 1 156 ILE n 1 157 LYS n 1 158 LEU n 1 159 ASN n 1 160 TRP n 1 161 GLN n 1 162 THR n 1 163 PRO n 1 164 PRO n 1 165 ALA n 1 166 ASN n 1 167 SER n 1 168 SER n 1 169 ILE n 1 170 ALA n 1 171 THR n 1 172 LEU n 1 173 GLU n 1 174 ALA n 1 175 GLU n 1 176 MET n 1 177 ALA n 1 178 THR n 1 179 LEU n 1 180 CYS n 1 181 ILE n 1 182 ASP n 1 183 GLY n 1 184 GLY n 1 185 LYS n 1 186 LYS n 1 187 ALA n 1 188 LYS n 1 189 MET n 1 190 ARG n 1 191 PRO n 1 192 GLY n 1 193 ASP n 1 194 VAL n 1 195 LEU n 1 196 GLY n 1 197 ALA n 1 198 LEU n 1 199 THR n 1 200 GLY n 1 201 ASP n 1 202 ILE n 1 203 GLY n 1 204 LEU n 1 205 ASP n 1 206 GLY n 1 207 ALA n 1 208 ASP n 1 209 ILE n 1 210 GLY n 1 211 LYS n 1 212 ILE n 1 213 ALA n 1 214 VAL n 1 215 HIS n 1 216 PRO n 1 217 ALA n 1 218 HIS n 1 219 VAL n 1 220 TYR n 1 221 VAL n 1 222 ALA n 1 223 VAL n 1 224 ARG n 1 225 GLN n 1 226 ALA n 1 227 VAL n 1 228 ALA n 1 229 HIS n 1 230 LYS n 1 231 ALA n 1 232 TRP n 1 233 LYS n 1 234 GLN n 1 235 LEU n 1 236 GLN n 1 237 GLY n 1 238 GLY n 1 239 LYS n 1 240 ILE n 1 241 LYS n 1 242 GLY n 1 243 LYS n 1 244 THR n 1 245 CYS n 1 246 ARG n 1 247 VAL n 1 248 ARG n 1 249 LEU n 1 250 LEU n 1 251 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 251 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbpA, b1343, JW1337' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli K-12' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DBPA_ECOLI _struct_ref.pdbx_db_accession P21693 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFA NGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQT PPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKG KTCRVRLLK ; _struct_ref.pdbx_align_begin 209 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7BBB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 251 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P21693 _struct_ref_seq.db_align_beg 209 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 457 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 209 _struct_ref_seq.pdbx_auth_seq_align_end 457 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7BBB GLY A 1 ? UNP P21693 ? ? 'cloning artifact' 207 1 1 7BBB GLY A 2 ? UNP P21693 ? ? 'cloning artifact' 208 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 4 '3D HNH NOESY' 1 isotropic 2 1 5 '3D HNCACB' 1 isotropic 3 1 5 '3D HNCO' 1 isotropic 4 1 5 '3D HN(COCA)CB' 1 isotropic 5 1 5 '3D HNCA' 1 isotropic 11 1 5 '3D HN(CA)CO' 1 isotropic 10 1 5 '3D H(CCO)NH' 1 isotropic 9 1 5 '3D H(CCO)NH' 1 isotropic 8 1 2 '3D CCH NOESY' 1 isotropic 7 1 4 '3D HCH NOESY' 1 isotropic 6 1 4 '3D CNH NOESY' 1 isotropic 12 1 2 '3D HCH NOESY' 1 isotropic 13 1 1 '3D HNH NOESY' 1 isotropic 14 1 3 '2D 1H-13C HSQC' 1 isotropic 15 1 4 '3D CCH NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 7.3 _pdbx_nmr_exptl_sample_conditions.ionic_strength 290 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;0.8 mM U-2H;U-15N;NA-Y;methyl13C1H-ILMVAT DbpA residues 209-457, 20 mM Arginine/Glutamate, 20 mM HEPES, 250 mM NaCl, 1 mM DTT, 95% H2O/5% D2O ; '95% H2O/5% D2O' ILMVATY_H2O solution ? 2 ;0.8 mM U-2H;U-15N;NA-Y;methyl13C1H-ILMVAT DbpA residues 209-457, 20 mM Arginine/Glutamate, 20 mM HEPES, 250 mM NaCl, 1 mM DTT, 100% D2O ; '100% D2O' ILMVATY_D2O solution ? 3 '0.74 mM [U-10% 13C] DbpA residues 209-457, 20 mM Arginine/Glutamate, 20 mM HEPES, 250 mM NaCl, 1 mM DTT, 100% D2O' '100% D2O' 13C_10% solution ? 4 ;0.8 mM U-2H;U-15N;methyl13C1H-ILMVA DbpA residues 209-457, 20 mM Arginine/Glutamate, 20 mM HEPES, 250 mM NaCl, 1 mM DTT, 95% H2O/5% D2O ; '95% H2O/5% D2O' ILMVA_H2O solution ? 5 ;0.74 mM U-13C; U-15N; U-2H;U-13C/U-2H/methyl-1H ILV DbpA residues 209-457, 20 mM Arginine/Glutamate, 20 mM HEPES, 250 mM NaCl, 1 mM DTT, 95% H2O/5% D2O ; '95% H2O/5% D2O' 2H13C15N_H2O solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE NEO' ? Bruker 800 ? 2 'AVANCE NEO' ? Bruker 600 ? # _pdbx_nmr_refine.entry_id 7BBB _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 7BBB _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7BBB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' CYANA 3.98.5 'Guntert, Mumenthaler and Wuthrich' 4 'chemical shift assignment' CARA ? 'Keller and Wuthrich' 5 'peak picking' NMRFAM-SPARKY 1.414 'W. Lee' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7BBB _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7BBB _struct.title 'Solution structure of C-terminal RecA and RRM domains of the DEAD box helicase DbpA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7BBB _struct_keywords.text 'DEAD box helicase, ribosome biogenesis, RNA, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 21 ? GLN A 34 ? GLY A 227 GLN A 240 1 ? 14 HELX_P HELX_P2 AA2 THR A 44 ? GLY A 59 ? THR A 250 GLY A 265 1 ? 16 HELX_P HELX_P3 AA3 GLU A 70 ? ASN A 83 ? GLU A 276 ASN A 289 1 ? 14 HELX_P HELX_P4 AA4 ASP A 115 ? ALA A 127 ? ASP A 321 ALA A 333 1 ? 13 HELX_P HELX_P5 AA5 ALA A 140 ? GLU A 142 ? ALA A 346 GLU A 348 5 ? 3 HELX_P HELX_P6 AA6 GLU A 143 ? LEU A 154 ? GLU A 349 LEU A 360 1 ? 12 HELX_P HELX_P7 AA7 GLY A 184 ? LYS A 188 ? GLY A 390 LYS A 394 5 ? 5 HELX_P HELX_P8 AA8 GLY A 192 ? THR A 199 ? GLY A 398 THR A 405 1 ? 8 HELX_P HELX_P9 AA9 GLN A 225 ? GLY A 237 ? GLN A 431 GLY A 443 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 62 ? LEU A 65 ? ALA A 268 LEU A 271 AA1 2 VAL A 88 ? ALA A 91 ? VAL A 294 ALA A 297 AA1 3 CYS A 38 ? PHE A 41 ? CYS A 244 PHE A 247 AA1 4 LEU A 106 ? ASN A 109 ? LEU A 312 ASN A 315 AA1 5 LEU A 134 ? PHE A 138 ? LEU A 340 PHE A 344 AA1 6 GLU A 11 ? TYR A 15 ? GLU A 217 TYR A 221 AA1 7 ASN A 159 ? GLN A 161 ? ASN A 365 GLN A 367 AA2 1 MET A 176 ? ILE A 181 ? MET A 382 ILE A 387 AA2 2 VAL A 219 ? ARG A 224 ? VAL A 425 ARG A 430 AA2 3 ILE A 209 ? VAL A 214 ? ILE A 415 VAL A 420 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 65 ? N LEU A 271 O VAL A 90 ? O VAL A 296 AA1 2 3 O LEU A 89 ? O LEU A 295 N CYS A 38 ? N CYS A 244 AA1 3 4 N PHE A 41 ? N PHE A 247 O VAL A 108 ? O VAL A 314 AA1 4 5 N ASN A 109 ? N ASN A 315 O PHE A 138 ? O PHE A 344 AA1 5 6 O ALA A 135 ? O ALA A 341 N GLN A 13 ? N GLN A 219 AA1 6 7 N PHE A 14 ? N PHE A 220 O GLN A 161 ? O GLN A 367 AA2 1 2 N ILE A 181 ? N ILE A 387 O VAL A 219 ? O VAL A 425 AA2 2 3 O ALA A 222 ? O ALA A 428 N LYS A 211 ? N LYS A 417 # _database_PDB_matrix.entry_id 7BBB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 7BBB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 207 207 GLY GLY A . n A 1 2 GLY 2 208 208 GLY GLY A . n A 1 3 SER 3 209 209 SER SER A . n A 1 4 THR 4 210 210 THR THR A . n A 1 5 ASP 5 211 211 ASP ASP A . n A 1 6 ALA 6 212 212 ALA ALA A . n A 1 7 LEU 7 213 213 LEU LEU A . n A 1 8 PRO 8 214 214 PRO PRO A . n A 1 9 PRO 9 215 215 PRO PRO A . n A 1 10 ILE 10 216 216 ILE ILE A . n A 1 11 GLU 11 217 217 GLU GLU A . n A 1 12 GLN 12 218 218 GLN GLN A . n A 1 13 GLN 13 219 219 GLN GLN A . n A 1 14 PHE 14 220 220 PHE PHE A . n A 1 15 TYR 15 221 221 TYR TYR A . n A 1 16 GLU 16 222 222 GLU GLU A . n A 1 17 THR 17 223 223 THR THR A . n A 1 18 SER 18 224 224 SER SER A . n A 1 19 SER 19 225 225 SER SER A . n A 1 20 LYS 20 226 226 LYS LYS A . n A 1 21 GLY 21 227 227 GLY GLY A . n A 1 22 LYS 22 228 228 LYS LYS A . n A 1 23 ILE 23 229 229 ILE ILE A . n A 1 24 PRO 24 230 230 PRO PRO A . n A 1 25 LEU 25 231 231 LEU LEU A . n A 1 26 LEU 26 232 232 LEU LEU A . n A 1 27 GLN 27 233 233 GLN GLN A . n A 1 28 ARG 28 234 234 ARG ARG A . n A 1 29 LEU 29 235 235 LEU LEU A . n A 1 30 LEU 30 236 236 LEU LEU A . n A 1 31 SER 31 237 237 SER SER A . n A 1 32 LEU 32 238 238 LEU LEU A . n A 1 33 HIS 33 239 239 HIS HIS A . n A 1 34 GLN 34 240 240 GLN GLN A . n A 1 35 PRO 35 241 241 PRO PRO A . n A 1 36 SER 36 242 242 SER SER A . n A 1 37 SER 37 243 243 SER SER A . n A 1 38 CYS 38 244 244 CYS CYS A . n A 1 39 VAL 39 245 245 VAL VAL A . n A 1 40 VAL 40 246 246 VAL VAL A . n A 1 41 PHE 41 247 247 PHE PHE A . n A 1 42 CYS 42 248 248 CYS CYS A . n A 1 43 ASN 43 249 249 ASN ASN A . n A 1 44 THR 44 250 250 THR THR A . n A 1 45 LYS 45 251 251 LYS LYS A . n A 1 46 LYS 46 252 252 LYS LYS A . n A 1 47 ASP 47 253 253 ASP ASP A . n A 1 48 CYS 48 254 254 CYS CYS A . n A 1 49 GLN 49 255 255 GLN GLN A . n A 1 50 ALA 50 256 256 ALA ALA A . n A 1 51 VAL 51 257 257 VAL VAL A . n A 1 52 CYS 52 258 258 CYS CYS A . n A 1 53 ASP 53 259 259 ASP ASP A . n A 1 54 ALA 54 260 260 ALA ALA A . n A 1 55 LEU 55 261 261 LEU LEU A . n A 1 56 ASN 56 262 262 ASN ASN A . n A 1 57 GLU 57 263 263 GLU GLU A . n A 1 58 VAL 58 264 264 VAL VAL A . n A 1 59 GLY 59 265 265 GLY GLY A . n A 1 60 GLN 60 266 266 GLN GLN A . n A 1 61 SER 61 267 267 SER SER A . n A 1 62 ALA 62 268 268 ALA ALA A . n A 1 63 LEU 63 269 269 LEU LEU A . n A 1 64 SER 64 270 270 SER SER A . n A 1 65 LEU 65 271 271 LEU LEU A . n A 1 66 HIS 66 272 272 HIS HIS A . n A 1 67 GLY 67 273 273 GLY GLY A . n A 1 68 ASP 68 274 274 ASP ASP A . n A 1 69 LEU 69 275 275 LEU LEU A . n A 1 70 GLU 70 276 276 GLU GLU A . n A 1 71 GLN 71 277 277 GLN GLN A . n A 1 72 ARG 72 278 278 ARG ARG A . n A 1 73 ASP 73 279 279 ASP ASP A . n A 1 74 ARG 74 280 280 ARG ARG A . n A 1 75 ASP 75 281 281 ASP ASP A . n A 1 76 GLN 76 282 282 GLN GLN A . n A 1 77 THR 77 283 283 THR THR A . n A 1 78 LEU 78 284 284 LEU LEU A . n A 1 79 VAL 79 285 285 VAL VAL A . n A 1 80 ARG 80 286 286 ARG ARG A . n A 1 81 PHE 81 287 287 PHE PHE A . n A 1 82 ALA 82 288 288 ALA ALA A . n A 1 83 ASN 83 289 289 ASN ASN A . n A 1 84 GLY 84 290 290 GLY GLY A . n A 1 85 SER 85 291 291 SER SER A . n A 1 86 ALA 86 292 292 ALA ALA A . n A 1 87 ARG 87 293 293 ARG ARG A . n A 1 88 VAL 88 294 294 VAL VAL A . n A 1 89 LEU 89 295 295 LEU LEU A . n A 1 90 VAL 90 296 296 VAL VAL A . n A 1 91 ALA 91 297 297 ALA ALA A . n A 1 92 THR 92 298 298 THR THR A . n A 1 93 ASP 93 299 299 ASP ASP A . n A 1 94 VAL 94 300 300 VAL VAL A . n A 1 95 ALA 95 301 301 ALA ALA A . n A 1 96 ALA 96 302 302 ALA ALA A . n A 1 97 ARG 97 303 303 ARG ARG A . n A 1 98 GLY 98 304 304 GLY GLY A . n A 1 99 LEU 99 305 305 LEU LEU A . n A 1 100 ASP 100 306 306 ASP ASP A . n A 1 101 ILE 101 307 307 ILE ILE A . n A 1 102 LYS 102 308 308 LYS LYS A . n A 1 103 SER 103 309 309 SER SER A . n A 1 104 LEU 104 310 310 LEU LEU A . n A 1 105 GLU 105 311 311 GLU GLU A . n A 1 106 LEU 106 312 312 LEU LEU A . n A 1 107 VAL 107 313 313 VAL VAL A . n A 1 108 VAL 108 314 314 VAL VAL A . n A 1 109 ASN 109 315 315 ASN ASN A . n A 1 110 PHE 110 316 316 PHE PHE A . n A 1 111 GLU 111 317 317 GLU GLU A . n A 1 112 LEU 112 318 318 LEU LEU A . n A 1 113 ALA 113 319 319 ALA ALA A . n A 1 114 TRP 114 320 320 TRP TRP A . n A 1 115 ASP 115 321 321 ASP ASP A . n A 1 116 PRO 116 322 322 PRO PRO A . n A 1 117 GLU 117 323 323 GLU GLU A . n A 1 118 VAL 118 324 324 VAL VAL A . n A 1 119 HIS 119 325 325 HIS HIS A . n A 1 120 VAL 120 326 326 VAL VAL A . n A 1 121 HIS 121 327 327 HIS HIS A . n A 1 122 ARG 122 328 328 ARG ARG A . n A 1 123 ILE 123 329 329 ILE ILE A . n A 1 124 GLY 124 330 330 GLY GLY A . n A 1 125 ARG 125 331 331 ARG ARG A . n A 1 126 THR 126 332 332 THR THR A . n A 1 127 ALA 127 333 333 ALA ALA A . n A 1 128 ARG 128 334 334 ARG ARG A . n A 1 129 ALA 129 335 335 ALA ALA A . n A 1 130 GLY 130 336 336 GLY GLY A . n A 1 131 ASN 131 337 337 ASN ASN A . n A 1 132 SER 132 338 338 SER SER A . n A 1 133 GLY 133 339 339 GLY GLY A . n A 1 134 LEU 134 340 340 LEU LEU A . n A 1 135 ALA 135 341 341 ALA ALA A . n A 1 136 ILE 136 342 342 ILE ILE A . n A 1 137 SER 137 343 343 SER SER A . n A 1 138 PHE 138 344 344 PHE PHE A . n A 1 139 CYS 139 345 345 CYS CYS A . n A 1 140 ALA 140 346 346 ALA ALA A . n A 1 141 PRO 141 347 347 PRO PRO A . n A 1 142 GLU 142 348 348 GLU GLU A . n A 1 143 GLU 143 349 349 GLU GLU A . n A 1 144 ALA 144 350 350 ALA ALA A . n A 1 145 GLN 145 351 351 GLN GLN A . n A 1 146 ARG 146 352 352 ARG ARG A . n A 1 147 ALA 147 353 353 ALA ALA A . n A 1 148 ASN 148 354 354 ASN ASN A . n A 1 149 ILE 149 355 355 ILE ILE A . n A 1 150 ILE 150 356 356 ILE ILE A . n A 1 151 SER 151 357 357 SER SER A . n A 1 152 ASP 152 358 358 ASP ASP A . n A 1 153 MET 153 359 359 MET MET A . n A 1 154 LEU 154 360 360 LEU LEU A . n A 1 155 GLN 155 361 361 GLN GLN A . n A 1 156 ILE 156 362 362 ILE ILE A . n A 1 157 LYS 157 363 363 LYS LYS A . n A 1 158 LEU 158 364 364 LEU LEU A . n A 1 159 ASN 159 365 365 ASN ASN A . n A 1 160 TRP 160 366 366 TRP TRP A . n A 1 161 GLN 161 367 367 GLN GLN A . n A 1 162 THR 162 368 368 THR THR A . n A 1 163 PRO 163 369 369 PRO PRO A . n A 1 164 PRO 164 370 370 PRO PRO A . n A 1 165 ALA 165 371 371 ALA ALA A . n A 1 166 ASN 166 372 372 ASN ASN A . n A 1 167 SER 167 373 373 SER SER A . n A 1 168 SER 168 374 374 SER SER A . n A 1 169 ILE 169 375 375 ILE ILE A . n A 1 170 ALA 170 376 376 ALA ALA A . n A 1 171 THR 171 377 377 THR THR A . n A 1 172 LEU 172 378 378 LEU LEU A . n A 1 173 GLU 173 379 379 GLU GLU A . n A 1 174 ALA 174 380 380 ALA ALA A . n A 1 175 GLU 175 381 381 GLU GLU A . n A 1 176 MET 176 382 382 MET MET A . n A 1 177 ALA 177 383 383 ALA ALA A . n A 1 178 THR 178 384 384 THR THR A . n A 1 179 LEU 179 385 385 LEU LEU A . n A 1 180 CYS 180 386 386 CYS CYS A . n A 1 181 ILE 181 387 387 ILE ILE A . n A 1 182 ASP 182 388 388 ASP ASP A . n A 1 183 GLY 183 389 389 GLY GLY A . n A 1 184 GLY 184 390 390 GLY GLY A . n A 1 185 LYS 185 391 391 LYS LYS A . n A 1 186 LYS 186 392 392 LYS LYS A . n A 1 187 ALA 187 393 393 ALA ALA A . n A 1 188 LYS 188 394 394 LYS LYS A . n A 1 189 MET 189 395 395 MET MET A . n A 1 190 ARG 190 396 396 ARG ARG A . n A 1 191 PRO 191 397 397 PRO PRO A . n A 1 192 GLY 192 398 398 GLY GLY A . n A 1 193 ASP 193 399 399 ASP ASP A . n A 1 194 VAL 194 400 400 VAL VAL A . n A 1 195 LEU 195 401 401 LEU LEU A . n A 1 196 GLY 196 402 402 GLY GLY A . n A 1 197 ALA 197 403 403 ALA ALA A . n A 1 198 LEU 198 404 404 LEU LEU A . n A 1 199 THR 199 405 405 THR THR A . n A 1 200 GLY 200 406 406 GLY GLY A . n A 1 201 ASP 201 407 407 ASP ASP A . n A 1 202 ILE 202 408 408 ILE ILE A . n A 1 203 GLY 203 409 409 GLY GLY A . n A 1 204 LEU 204 410 410 LEU LEU A . n A 1 205 ASP 205 411 411 ASP ASP A . n A 1 206 GLY 206 412 412 GLY GLY A . n A 1 207 ALA 207 413 413 ALA ALA A . n A 1 208 ASP 208 414 414 ASP ASP A . n A 1 209 ILE 209 415 415 ILE ILE A . n A 1 210 GLY 210 416 416 GLY GLY A . n A 1 211 LYS 211 417 417 LYS LYS A . n A 1 212 ILE 212 418 418 ILE ILE A . n A 1 213 ALA 213 419 419 ALA ALA A . n A 1 214 VAL 214 420 420 VAL VAL A . n A 1 215 HIS 215 421 421 HIS HIS A . n A 1 216 PRO 216 422 422 PRO PRO A . n A 1 217 ALA 217 423 423 ALA ALA A . n A 1 218 HIS 218 424 424 HIS HIS A . n A 1 219 VAL 219 425 425 VAL VAL A . n A 1 220 TYR 220 426 426 TYR TYR A . n A 1 221 VAL 221 427 427 VAL VAL A . n A 1 222 ALA 222 428 428 ALA ALA A . n A 1 223 VAL 223 429 429 VAL VAL A . n A 1 224 ARG 224 430 430 ARG ARG A . n A 1 225 GLN 225 431 431 GLN GLN A . n A 1 226 ALA 226 432 432 ALA ALA A . n A 1 227 VAL 227 433 433 VAL VAL A . n A 1 228 ALA 228 434 434 ALA ALA A . n A 1 229 HIS 229 435 435 HIS HIS A . n A 1 230 LYS 230 436 436 LYS LYS A . n A 1 231 ALA 231 437 437 ALA ALA A . n A 1 232 TRP 232 438 438 TRP TRP A . n A 1 233 LYS 233 439 439 LYS LYS A . n A 1 234 GLN 234 440 440 GLN GLN A . n A 1 235 LEU 235 441 441 LEU LEU A . n A 1 236 GLN 236 442 442 GLN GLN A . n A 1 237 GLY 237 443 443 GLY GLY A . n A 1 238 GLY 238 444 444 GLY GLY A . n A 1 239 LYS 239 445 445 LYS LYS A . n A 1 240 ILE 240 446 446 ILE ILE A . n A 1 241 LYS 241 447 447 LYS LYS A . n A 1 242 GLY 242 448 448 GLY GLY A . n A 1 243 LYS 243 449 449 LYS LYS A . n A 1 244 THR 244 450 450 THR THR A . n A 1 245 CYS 245 451 451 CYS CYS A . n A 1 246 ARG 246 452 452 ARG ARG A . n A 1 247 VAL 247 453 453 VAL VAL A . n A 1 248 ARG 248 454 454 ARG ARG A . n A 1 249 LEU 249 455 455 LEU LEU A . n A 1 250 LEU 250 456 456 LEU LEU A . n A 1 251 LYS 251 457 457 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 13770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-07-14 2 'Structure model' 1 1 2021-09-22 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_database_proc 5 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 2 'Structure model' '_database_2.pdbx_DOI' 12 2 'Structure model' '_database_2.pdbx_database_accession' 13 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'DbpA residues 209-457' 0.8 ? mM U-2H;U-15N;NA-Y;methyl13C1H-ILMVAT 1 Arginine/Glutamate 20 ? mM 'natural abundance' 1 HEPES 20 ? mM 'natural abundance' 1 NaCl 250 ? mM 'natural abundance' 1 DTT 1 ? mM 'natural abundance' 2 'DbpA residues 209-457' 0.8 ? mM U-2H;U-15N;NA-Y;methyl13C1H-ILMVAT 2 Arginine/Glutamate 20 ? mM 'natural abundance' 2 HEPES 20 ? mM 'natural abundance' 2 NaCl 250 ? mM 'natural abundance' 2 DTT 1 ? mM 'natural abundance' 3 'DbpA residues 209-457' 0.74 ? mM '[U-10% 13C]' 3 Arginine/Glutamate 20 ? mM 'natural abundance' 3 HEPES 20 ? mM 'natural abundance' 3 NaCl 250 ? mM 'natural abundance' 3 DTT 1 ? mM 'natural abundance' 4 'DbpA residues 209-457' 0.8 ? mM U-2H;U-15N;methyl13C1H-ILMVA 4 Arginine/Glutamate 20 ? mM 'natural abundance' 4 HEPES 20 ? mM 'natural abundance' 4 NaCl 250 ? mM 'natural abundance' 4 DTT 1 ? mM 'natural abundance' 5 'DbpA residues 209-457' 0.74 ? mM 'U-13C; U-15N; U-2H;U-13C/U-2H/methyl-1H ILV' 5 Arginine/Glutamate 20 ? mM 'natural abundance' 5 HEPES 20 ? mM 'natural abundance' 5 NaCl 250 ? mM 'natural abundance' 5 DTT 1 ? mM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 209 ? ? -39.53 -70.84 2 1 ALA A 212 ? ? 39.93 65.75 3 1 LEU A 213 ? ? -36.52 149.99 4 1 ALA A 302 ? ? -92.56 37.79 5 1 LEU A 305 ? ? -61.62 -170.62 6 1 LYS A 308 ? ? -145.28 33.46 7 1 SER A 309 ? ? -164.00 30.65 8 1 ALA A 319 ? ? -58.38 -174.43 9 1 ARG A 334 ? ? -155.80 39.10 10 1 SER A 338 ? ? -103.72 -167.87 11 1 CYS A 345 ? ? 179.33 145.64 12 1 ALA A 346 ? ? -48.62 165.26 13 1 ASN A 365 ? ? -101.43 76.91 14 1 TRP A 366 ? ? -59.23 95.95 15 1 ALA A 383 ? ? -160.60 118.25 16 1 ASP A 388 ? ? -94.55 37.39 17 1 PRO A 397 ? ? -69.85 68.61 18 1 LYS A 445 ? ? 178.49 156.23 19 2 ALA A 212 ? ? -177.56 -172.98 20 2 PRO A 215 ? ? -69.75 -168.05 21 2 ILE A 216 ? ? -56.67 105.10 22 2 LYS A 308 ? ? -175.37 34.10 23 2 SER A 309 ? ? -162.40 29.58 24 2 ALA A 319 ? ? -49.26 167.53 25 2 SER A 338 ? ? -154.61 -87.08 26 2 CYS A 345 ? ? 179.21 179.08 27 2 ASN A 365 ? ? -115.57 63.10 28 2 PRO A 370 ? ? -69.76 -170.28 29 2 ASP A 388 ? ? -95.13 30.88 30 2 PRO A 397 ? ? -69.75 75.06 31 3 THR A 210 ? ? -160.27 105.95 32 3 LEU A 305 ? ? -65.14 -177.82 33 3 SER A 309 ? ? -171.93 35.51 34 3 ALA A 319 ? ? -56.99 -175.79 35 3 ARG A 334 ? ? -175.42 53.36 36 3 CYS A 345 ? ? 178.88 151.66 37 3 ASN A 365 ? ? -105.90 78.48 38 3 PRO A 370 ? ? -69.65 -173.21 39 3 SER A 373 ? ? -100.56 -74.57 40 3 SER A 374 ? ? -175.53 143.36 41 3 ASP A 388 ? ? -92.66 31.27 42 3 PRO A 397 ? ? -69.80 75.15 43 4 LEU A 305 ? ? -63.79 -176.70 44 4 SER A 309 ? ? -170.46 34.61 45 4 ALA A 319 ? ? -55.33 178.75 46 4 ARG A 334 ? ? -146.76 49.76 47 4 CYS A 345 ? ? 178.09 145.81 48 4 ASN A 365 ? ? -110.02 69.32 49 4 ALA A 371 ? ? -135.98 -48.05 50 4 SER A 374 ? ? -101.30 75.33 51 4 PRO A 397 ? ? -69.79 74.05 52 5 SER A 243 ? ? -163.98 115.59 53 5 ARG A 293 ? ? -122.50 -52.96 54 5 LEU A 305 ? ? -66.46 -173.40 55 5 SER A 309 ? ? -168.70 33.33 56 5 ALA A 319 ? ? -56.40 -177.59 57 5 ARG A 334 ? ? -158.62 60.46 58 5 CYS A 345 ? ? 179.67 168.41 59 5 ASN A 365 ? ? -111.08 65.75 60 5 SER A 373 ? ? 179.98 -177.44 61 5 SER A 374 ? ? 63.58 73.45 62 6 LEU A 305 ? ? -64.52 -176.47 63 6 SER A 309 ? ? -171.97 34.64 64 6 ALA A 319 ? ? -57.87 -174.94 65 6 ARG A 334 ? ? -163.73 42.80 66 6 CYS A 345 ? ? 178.97 146.85 67 6 ASN A 365 ? ? -103.30 71.48 68 6 TRP A 366 ? ? -53.64 109.89 69 6 ALA A 371 ? ? -164.12 35.45 70 6 SER A 374 ? ? -158.32 81.27 71 7 SER A 209 ? ? -118.16 -74.15 72 7 ASP A 211 ? ? -177.59 116.57 73 7 ILE A 216 ? ? -57.75 105.66 74 7 LEU A 305 ? ? -66.13 -178.79 75 7 SER A 309 ? ? -165.03 31.55 76 7 ALA A 319 ? ? -54.52 177.74 77 7 ALA A 333 ? ? -173.39 -178.09 78 7 ARG A 334 ? ? -174.45 51.38 79 7 CYS A 345 ? ? 179.37 161.64 80 7 ASN A 365 ? ? -103.94 68.82 81 7 ASN A 372 ? ? -54.19 101.39 82 7 SER A 373 ? ? -64.33 -76.91 83 7 SER A 374 ? ? 178.55 115.31 84 8 ALA A 212 ? ? -90.31 46.74 85 8 PRO A 215 ? ? -69.79 -170.36 86 8 LEU A 305 ? ? -62.10 -175.01 87 8 ALA A 319 ? ? -55.68 -179.14 88 8 ALA A 333 ? ? -162.64 59.89 89 8 ARG A 334 ? ? -69.17 75.35 90 8 CYS A 345 ? ? 179.06 143.36 91 8 ASN A 365 ? ? -111.57 76.19 92 8 PRO A 370 ? ? -69.77 -170.50 93 8 SER A 374 ? ? -151.36 72.86 94 8 PRO A 397 ? ? -69.72 75.63 95 9 ASP A 211 ? ? -96.17 42.29 96 9 PRO A 215 ? ? -69.85 -164.99 97 9 ILE A 216 ? ? -55.09 105.16 98 9 LEU A 305 ? ? -65.85 -174.43 99 9 SER A 309 ? ? -163.76 30.53 100 9 ALA A 319 ? ? -55.30 179.62 101 9 ALA A 333 ? ? -153.92 -75.38 102 9 SER A 338 ? ? -162.77 -169.86 103 9 CYS A 345 ? ? 178.06 153.91 104 9 PRO A 370 ? ? -69.71 -172.05 105 9 SER A 374 ? ? -176.27 138.28 106 9 ASP A 388 ? ? -93.76 30.98 107 9 PRO A 397 ? ? -69.72 73.69 108 10 PRO A 215 ? ? -69.77 -158.65 109 10 ILE A 216 ? ? -49.81 105.34 110 10 LEU A 305 ? ? -61.60 -175.54 111 10 SER A 309 ? ? 72.34 37.69 112 10 ALA A 319 ? ? -53.07 174.30 113 10 ALA A 333 ? ? -178.56 93.21 114 10 ARG A 334 ? ? -95.01 30.97 115 10 ALA A 335 ? ? -126.14 -168.62 116 10 SER A 338 ? ? -176.39 -165.74 117 10 CYS A 345 ? ? 177.95 171.91 118 10 PRO A 370 ? ? -69.78 -170.34 119 10 ASN A 372 ? ? -118.20 -169.55 120 10 PRO A 397 ? ? -69.70 72.52 121 11 ASP A 211 ? ? -177.23 -178.52 122 11 ILE A 216 ? ? -57.28 105.39 123 11 LEU A 305 ? ? -63.25 -174.64 124 11 SER A 309 ? ? -166.17 40.72 125 11 ALA A 319 ? ? -57.69 -174.95 126 11 ALA A 333 ? ? -170.69 -171.77 127 11 ARG A 334 ? ? -179.73 46.54 128 11 CYS A 345 ? ? 179.00 153.80 129 11 GLN A 361 ? ? 39.22 42.25 130 11 PRO A 370 ? ? -69.69 -169.90 131 11 SER A 373 ? ? -76.50 -169.59 132 11 PRO A 397 ? ? -69.72 73.13 133 12 PRO A 215 ? ? -69.81 -163.92 134 12 ILE A 216 ? ? -52.74 107.45 135 12 LEU A 275 ? ? -47.81 163.77 136 12 SER A 309 ? ? 64.68 80.87 137 12 ALA A 319 ? ? -54.23 176.78 138 12 ALA A 333 ? ? -178.12 96.43 139 12 ARG A 334 ? ? -95.72 33.12 140 12 ALA A 335 ? ? -107.85 -168.27 141 12 CYS A 345 ? ? 178.37 176.58 142 12 PRO A 370 ? ? -69.81 -169.01 143 12 ALA A 371 ? ? -56.94 -178.13 144 12 SER A 373 ? ? -80.94 -71.00 145 12 SER A 374 ? ? -176.95 144.81 146 12 ASP A 388 ? ? -93.80 31.27 147 12 PRO A 397 ? ? -69.84 72.65 148 13 ASP A 211 ? ? -174.72 -175.96 149 13 ILE A 216 ? ? -56.94 105.82 150 13 LEU A 305 ? ? -59.85 -165.74 151 13 LYS A 308 ? ? -155.97 33.36 152 13 ALA A 319 ? ? -53.86 176.60 153 13 ARG A 334 ? ? -176.09 46.30 154 13 CYS A 345 ? ? 178.68 152.60 155 13 ASN A 365 ? ? -111.22 75.24 156 13 PRO A 370 ? ? -69.72 -170.36 157 13 ASN A 372 ? ? 179.96 123.63 158 13 SER A 373 ? ? -128.85 -76.47 159 13 SER A 374 ? ? 179.17 161.85 160 13 PRO A 397 ? ? -69.80 74.91 161 14 PRO A 215 ? ? -69.75 -87.80 162 14 LEU A 305 ? ? -63.33 -175.84 163 14 SER A 309 ? ? 50.08 76.31 164 14 ALA A 319 ? ? -55.76 -179.83 165 14 ALA A 333 ? ? -142.02 -70.48 166 14 ASN A 337 ? ? -76.34 -75.44 167 14 SER A 338 ? ? -65.33 -174.73 168 14 CYS A 345 ? ? 179.09 151.90 169 14 ASN A 365 ? ? -102.53 77.17 170 14 PRO A 370 ? ? -69.80 -172.20 171 14 ALA A 371 ? ? -53.62 172.62 172 14 ASN A 372 ? ? -51.92 105.19 173 15 LEU A 305 ? ? -63.94 -174.92 174 15 SER A 309 ? ? -167.07 35.20 175 15 ALA A 319 ? ? -57.42 -175.87 176 15 ARG A 334 ? ? -143.00 38.24 177 15 CYS A 345 ? ? 177.68 150.91 178 15 TRP A 366 ? ? -59.47 108.19 179 15 ALA A 371 ? ? -178.84 -176.41 180 15 SER A 373 ? ? -56.79 178.76 181 15 ASP A 388 ? ? -93.31 32.61 182 15 PRO A 397 ? ? -69.73 60.87 183 16 SER A 209 ? ? -175.13 133.90 184 16 THR A 210 ? ? -174.13 124.65 185 16 ASP A 211 ? ? -173.87 144.87 186 16 ILE A 216 ? ? -56.70 105.18 187 16 LEU A 305 ? ? -63.99 -179.05 188 16 SER A 309 ? ? -161.28 29.72 189 16 ALA A 319 ? ? -47.76 164.14 190 16 SER A 338 ? ? -142.34 -104.51 191 16 CYS A 345 ? ? 177.92 149.27 192 16 PRO A 370 ? ? -69.73 -171.86 193 16 SER A 373 ? ? -116.06 79.45 194 16 ASP A 388 ? ? -94.40 31.38 195 16 LYS A 394 ? ? 66.94 60.08 196 16 PRO A 397 ? ? -69.71 75.39 197 17 SER A 209 ? ? -175.30 141.60 198 17 THR A 210 ? ? -179.04 134.21 199 17 ALA A 212 ? ? -58.30 -177.29 200 17 PRO A 215 ? ? -69.68 -161.85 201 17 ILE A 216 ? ? -51.41 104.68 202 17 ALA A 319 ? ? -52.25 173.36 203 17 ALA A 333 ? ? -172.66 99.40 204 17 ARG A 334 ? ? -95.43 36.03 205 17 ALA A 335 ? ? -117.20 -167.78 206 17 SER A 338 ? ? -121.99 -169.56 207 17 CYS A 345 ? ? 176.98 158.04 208 17 ASN A 365 ? ? -106.87 66.97 209 17 PRO A 397 ? ? -69.83 76.98 210 17 HIS A 424 ? ? -171.38 145.84 211 18 LEU A 305 ? ? -66.05 -178.96 212 18 SER A 309 ? ? -174.08 35.48 213 18 ALA A 319 ? ? -54.94 179.86 214 18 ARG A 334 ? ? -150.99 47.61 215 18 CYS A 345 ? ? 178.09 153.51 216 18 ASN A 365 ? ? -103.99 66.68 217 18 TRP A 366 ? ? -51.36 109.16 218 18 PRO A 370 ? ? -69.80 -170.36 219 18 SER A 374 ? ? -108.16 48.13 220 19 LEU A 305 ? ? -58.62 -167.79 221 19 ASP A 306 ? ? -100.10 71.91 222 19 LYS A 308 ? ? -152.55 30.46 223 19 ALA A 319 ? ? -53.97 177.58 224 19 ARG A 334 ? ? -176.24 56.18 225 19 ALA A 335 ? ? -160.36 -169.14 226 19 SER A 338 ? ? -106.97 -169.83 227 19 CYS A 345 ? ? 179.00 158.28 228 19 ALA A 371 ? ? -52.14 171.18 229 19 ASN A 372 ? ? -51.50 103.28 230 19 ASP A 388 ? ? -95.07 31.11 231 19 PRO A 397 ? ? -69.73 75.73 232 20 LEU A 305 ? ? -62.04 -174.72 233 20 ALA A 319 ? ? -52.30 173.46 234 20 ARG A 334 ? ? -152.35 44.41 235 20 CYS A 345 ? ? 177.98 175.95 236 20 PRO A 347 ? ? -69.81 0.79 237 20 PRO A 397 ? ? -69.70 73.27 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council (ERC)' Germany 616052 1 'German Research Foundation (DFG)' Germany 'WU 988/1-1' 2 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details monomer #