HEADER TRANSFERASE 20-DEC-20 7BCM TITLE THE DDR1 KINASE DOMAIN BOUND TO SR302 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 5 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 6 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 7 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 8 TYROSINE-PROTEIN KINASE CAK; COMPND 9 EC: 2.7.10.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE CANCER INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MATHEA,D.CHATTERJEE,F.PREUSS,S.ROEHM,A.JOERGER,S.KNAPP REVDAT 3 31-JAN-24 7BCM 1 REMARK REVDAT 2 14-SEP-22 7BCM 1 JRNL REVDAT 1 03-MAR-21 7BCM 0 JRNL AUTH S.ROHM,B.T.BERGER,M.SCHRODER,D.CHATTERJEE,S.MATHEA, JRNL AUTH 2 A.C.JOERGER,D.M.PINKAS,J.C.BUFTON,A.TJADEN,L.KOVOORU, JRNL AUTH 3 M.KUDOLO,C.POHL,A.N.BULLOCK,S.MULLER,S.LAUFER,S.KNAPP JRNL TITL DEVELOPMENT OF A SELECTIVE DUAL DISCOIDIN DOMAIN RECEPTOR JRNL TITL 2 (DDR)/P38 KINASE CHEMICAL PROBE. JRNL REF J.MED.CHEM. V. 64 13451 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34506142 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00868 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.610 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 33756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7100 - 5.2600 0.98 2714 124 0.2364 0.3188 REMARK 3 2 5.2600 - 4.1800 0.99 2688 133 0.2129 0.2828 REMARK 3 3 4.1800 - 3.6500 0.99 2678 145 0.2203 0.2516 REMARK 3 4 3.6500 - 3.3200 0.99 2674 154 0.2435 0.2896 REMARK 3 5 3.3200 - 3.0800 0.99 2681 151 0.2552 0.3279 REMARK 3 6 3.0800 - 2.9000 0.99 2672 141 0.2600 0.3281 REMARK 3 7 2.9000 - 2.7500 0.96 2579 149 0.2510 0.3525 REMARK 3 8 2.7500 - 2.6300 0.98 2664 142 0.2595 0.3289 REMARK 3 9 2.6300 - 2.5300 0.99 2671 143 0.2641 0.2850 REMARK 3 10 2.5300 - 2.4400 1.00 2664 150 0.2696 0.3681 REMARK 3 11 2.4400 - 2.3700 1.00 2694 130 0.2762 0.3634 REMARK 3 12 2.3700 - 2.3000 1.00 2676 139 0.3003 0.4047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.394 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4361 REMARK 3 ANGLE : 1.511 5928 REMARK 3 CHIRALITY : 0.070 659 REMARK 3 PLANARITY : 0.010 801 REMARK 3 DIHEDRAL : 24.944 670 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292113141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33763 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BKJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG10,000 0.1 M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.20100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 599 REMARK 465 MET A 600 REMARK 465 PRO A 601 REMARK 465 ARG A 602 REMARK 465 VAL A 603 REMARK 465 GLY A 617 REMARK 465 GLU A 618 REMARK 465 GLY A 619 REMARK 465 GLN A 620 REMARK 465 PHE A 621 REMARK 465 ASP A 634 REMARK 465 LEU A 635 REMARK 465 VAL A 636 REMARK 465 SER A 637 REMARK 465 LEU A 638 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 PRO A 641 REMARK 465 LEU A 642 REMARK 465 ASN A 643 REMARK 465 VAL A 644 REMARK 465 ARG A 645 REMARK 465 LYS A 646 REMARK 465 GLY A 647 REMARK 465 LYS A 721 REMARK 465 ALA A 722 REMARK 465 ALA A 723 REMARK 465 GLU A 724 REMARK 465 GLY A 725 REMARK 465 ALA A 726 REMARK 465 PRO A 727 REMARK 465 GLY A 728 REMARK 465 ASP A 729 REMARK 465 GLY A 730 REMARK 465 GLN A 731 REMARK 465 ALA A 732 REMARK 465 ALA A 733 REMARK 465 GLN A 734 REMARK 465 LEU A 910 REMARK 465 ASN A 911 REMARK 465 THR A 912 REMARK 465 VAL A 913 REMARK 465 SER B 599 REMARK 465 MET B 600 REMARK 465 PRO B 601 REMARK 465 ARG B 602 REMARK 465 VAL B 603 REMARK 465 GLY B 617 REMARK 465 GLU B 618 REMARK 465 GLY B 619 REMARK 465 GLN B 620 REMARK 465 PHE B 621 REMARK 465 GLY B 622 REMARK 465 ASP B 630 REMARK 465 SER B 631 REMARK 465 PRO B 632 REMARK 465 GLN B 633 REMARK 465 ASP B 634 REMARK 465 LEU B 635 REMARK 465 VAL B 636 REMARK 465 SER B 637 REMARK 465 LEU B 638 REMARK 465 ASP B 639 REMARK 465 PHE B 640 REMARK 465 PRO B 641 REMARK 465 LEU B 642 REMARK 465 ASN B 643 REMARK 465 VAL B 644 REMARK 465 ARG B 645 REMARK 465 LYS B 646 REMARK 465 GLY B 647 REMARK 465 HIS B 648 REMARK 465 PRO B 649 REMARK 465 GLN B 693 REMARK 465 ASP B 694 REMARK 465 LYS B 721 REMARK 465 ALA B 722 REMARK 465 ALA B 723 REMARK 465 GLU B 724 REMARK 465 GLY B 725 REMARK 465 ALA B 726 REMARK 465 PRO B 727 REMARK 465 GLY B 728 REMARK 465 ASP B 729 REMARK 465 GLY B 730 REMARK 465 GLN B 731 REMARK 465 ALA B 732 REMARK 465 ALA B 733 REMARK 465 GLN B 734 REMARK 465 THR B 912 REMARK 465 VAL B 913 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 613 CG CD CE NZ REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 HIS A 648 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 663 CG CD CE NZ REMARK 470 LYS A 674 CE NZ REMARK 470 ARG A 678 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 680 CG CD CE NZ REMARK 470 ASP A 694 CG OD1 OD2 REMARK 470 SER A 788 OG REMARK 470 GLN A 800 CD OE1 NE2 REMARK 470 MET A 817 CG SD CE REMARK 470 LYS A 819 CG CD CE NZ REMARK 470 GLU A 851 CG CD OE1 OE2 REMARK 470 ARG A 862 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 866 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 886 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 893 CG CD OE1 OE2 REMARK 470 GLN A 894 CD OE1 NE2 REMARK 470 SER B 608 OG REMARK 470 ARG B 609 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 610 CG CD1 CD2 REMARK 470 ARG B 611 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 613 CG CD CE NZ REMARK 470 LYS B 615 CG CD CE NZ REMARK 470 GLU B 623 CG CD OE1 OE2 REMARK 470 GLU B 628 CG CD OE1 OE2 REMARK 470 VAL B 629 CG1 CG2 REMARK 470 LEU B 650 CG CD1 CD2 REMARK 470 LEU B 651 CG CD1 CD2 REMARK 470 ARG B 658 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 663 CG CD CE NZ REMARK 470 ARG B 678 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 680 CE NZ REMARK 470 LEU B 697 CG CD1 CD2 REMARK 470 GLU B 705 CG CD OE1 OE2 REMARK 470 GLU B 719 CG CD OE1 OE2 REMARK 470 GLU B 776 CD OE1 OE2 REMARK 470 ASN B 777 CG OD1 ND2 REMARK 470 SER B 788 OG REMARK 470 ASN B 790 CG OD1 ND2 REMARK 470 ARG B 798 NE CZ NH1 NH2 REMARK 470 GLN B 800 CD OE1 NE2 REMARK 470 LYS B 819 CG CD CE NZ REMARK 470 GLU B 851 CG CD OE1 OE2 REMARK 470 GLU B 855 CG CD OE1 OE2 REMARK 470 ARG B 862 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 910 CG CD1 CD2 REMARK 470 ASN B 911 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 787 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 PHE A 904 CB - CG - CD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 PHE A 904 CB - CG - CD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET B 704 CG - SD - CE ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG B 789 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 PHE B 904 CB - CG - CD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 PHE B 904 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 632 2.75 -69.74 REMARK 500 ARG A 658 140.93 -37.10 REMARK 500 GLU A 705 -36.24 -39.12 REMARK 500 ARG A 765 -19.67 87.34 REMARK 500 ASP A 766 46.18 -144.58 REMARK 500 ALA A 875 -6.36 -59.53 REMARK 500 LYS B 613 -70.90 -118.02 REMARK 500 ASP B 660 10.74 -140.89 REMARK 500 ASP B 702 139.99 -30.12 REMARK 500 ARG B 765 -21.01 80.94 REMARK 500 SER B 788 -8.01 -146.54 REMARK 500 ALA B 811 156.00 -49.67 REMARK 500 GLU B 907 -70.09 -58.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 904 0.08 SIDE CHAIN REMARK 500 PHE B 904 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TBK A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TBK B 1001 DBREF 7BCM A 601 913 UNP Q08345 DDR1_HUMAN 601 913 DBREF 7BCM B 601 913 UNP Q08345 DDR1_HUMAN 601 913 SEQADV 7BCM SER A 599 UNP Q08345 EXPRESSION TAG SEQADV 7BCM MET A 600 UNP Q08345 EXPRESSION TAG SEQADV 7BCM SER B 599 UNP Q08345 EXPRESSION TAG SEQADV 7BCM MET B 600 UNP Q08345 EXPRESSION TAG SEQRES 1 A 315 SER MET PRO ARG VAL ASP PHE PRO ARG SER ARG LEU ARG SEQRES 2 A 315 PHE LYS GLU LYS LEU GLY GLU GLY GLN PHE GLY GLU VAL SEQRES 3 A 315 HIS LEU CYS GLU VAL ASP SER PRO GLN ASP LEU VAL SER SEQRES 4 A 315 LEU ASP PHE PRO LEU ASN VAL ARG LYS GLY HIS PRO LEU SEQRES 5 A 315 LEU VAL ALA VAL LYS ILE LEU ARG PRO ASP ALA THR LYS SEQRES 6 A 315 ASN ALA ARG ASN ASP PHE LEU LYS GLU VAL LYS ILE MET SEQRES 7 A 315 SER ARG LEU LYS ASP PRO ASN ILE ILE ARG LEU LEU GLY SEQRES 8 A 315 VAL CYS VAL GLN ASP ASP PRO LEU CYS MET ILE THR ASP SEQRES 9 A 315 TYR MET GLU ASN GLY ASP LEU ASN GLN PHE LEU SER ALA SEQRES 10 A 315 HIS GLN LEU GLU ASP LYS ALA ALA GLU GLY ALA PRO GLY SEQRES 11 A 315 ASP GLY GLN ALA ALA GLN GLY PRO THR ILE SER TYR PRO SEQRES 12 A 315 MET LEU LEU HIS VAL ALA ALA GLN ILE ALA SER GLY MET SEQRES 13 A 315 ARG TYR LEU ALA THR LEU ASN PHE VAL HIS ARG ASP LEU SEQRES 14 A 315 ALA THR ARG ASN CYS LEU VAL GLY GLU ASN PHE THR ILE SEQRES 15 A 315 LYS ILE ALA ASP PHE GLY MET SER ARG ASN LEU TYR ALA SEQRES 16 A 315 GLY ASP TYR TYR ARG VAL GLN GLY ARG ALA VAL LEU PRO SEQRES 17 A 315 ILE ARG TRP MET ALA TRP GLU CYS ILE LEU MET GLY LYS SEQRES 18 A 315 PHE THR THR ALA SER ASP VAL TRP ALA PHE GLY VAL THR SEQRES 19 A 315 LEU TRP GLU VAL LEU MET LEU CYS ARG ALA GLN PRO PHE SEQRES 20 A 315 GLY GLN LEU THR ASP GLU GLN VAL ILE GLU ASN ALA GLY SEQRES 21 A 315 GLU PHE PHE ARG ASP GLN GLY ARG GLN VAL TYR LEU SER SEQRES 22 A 315 ARG PRO PRO ALA CYS PRO GLN GLY LEU TYR GLU LEU MET SEQRES 23 A 315 LEU ARG CYS TRP SER ARG GLU SER GLU GLN ARG PRO PRO SEQRES 24 A 315 PHE SER GLN LEU HIS ARG PHE LEU ALA GLU ASP ALA LEU SEQRES 25 A 315 ASN THR VAL SEQRES 1 B 315 SER MET PRO ARG VAL ASP PHE PRO ARG SER ARG LEU ARG SEQRES 2 B 315 PHE LYS GLU LYS LEU GLY GLU GLY GLN PHE GLY GLU VAL SEQRES 3 B 315 HIS LEU CYS GLU VAL ASP SER PRO GLN ASP LEU VAL SER SEQRES 4 B 315 LEU ASP PHE PRO LEU ASN VAL ARG LYS GLY HIS PRO LEU SEQRES 5 B 315 LEU VAL ALA VAL LYS ILE LEU ARG PRO ASP ALA THR LYS SEQRES 6 B 315 ASN ALA ARG ASN ASP PHE LEU LYS GLU VAL LYS ILE MET SEQRES 7 B 315 SER ARG LEU LYS ASP PRO ASN ILE ILE ARG LEU LEU GLY SEQRES 8 B 315 VAL CYS VAL GLN ASP ASP PRO LEU CYS MET ILE THR ASP SEQRES 9 B 315 TYR MET GLU ASN GLY ASP LEU ASN GLN PHE LEU SER ALA SEQRES 10 B 315 HIS GLN LEU GLU ASP LYS ALA ALA GLU GLY ALA PRO GLY SEQRES 11 B 315 ASP GLY GLN ALA ALA GLN GLY PRO THR ILE SER TYR PRO SEQRES 12 B 315 MET LEU LEU HIS VAL ALA ALA GLN ILE ALA SER GLY MET SEQRES 13 B 315 ARG TYR LEU ALA THR LEU ASN PHE VAL HIS ARG ASP LEU SEQRES 14 B 315 ALA THR ARG ASN CYS LEU VAL GLY GLU ASN PHE THR ILE SEQRES 15 B 315 LYS ILE ALA ASP PHE GLY MET SER ARG ASN LEU TYR ALA SEQRES 16 B 315 GLY ASP TYR TYR ARG VAL GLN GLY ARG ALA VAL LEU PRO SEQRES 17 B 315 ILE ARG TRP MET ALA TRP GLU CYS ILE LEU MET GLY LYS SEQRES 18 B 315 PHE THR THR ALA SER ASP VAL TRP ALA PHE GLY VAL THR SEQRES 19 B 315 LEU TRP GLU VAL LEU MET LEU CYS ARG ALA GLN PRO PHE SEQRES 20 B 315 GLY GLN LEU THR ASP GLU GLN VAL ILE GLU ASN ALA GLY SEQRES 21 B 315 GLU PHE PHE ARG ASP GLN GLY ARG GLN VAL TYR LEU SER SEQRES 22 B 315 ARG PRO PRO ALA CYS PRO GLN GLY LEU TYR GLU LEU MET SEQRES 23 B 315 LEU ARG CYS TRP SER ARG GLU SER GLU GLN ARG PRO PRO SEQRES 24 B 315 PHE SER GLN LEU HIS ARG PHE LEU ALA GLU ASP ALA LEU SEQRES 25 B 315 ASN THR VAL HET TBK A1001 44 HET TBK B1001 44 HETNAM TBK ~{N}-[[4-[[(2~{S})-4-CYCLOHEXYL-1-[[(3~{S})-1- HETNAM 2 TBK METHYLSULFONYLPIPERIDIN-3-YL]AMINO]-1-OXIDANYLIDENE- HETNAM 3 TBK BUTAN-2-YL]CARBAMOYL]PHENYL]METHYL]IMIDAZO[1,2- HETNAM 4 TBK A]PYRIDINE-3-CARBOXAMIDE FORMUL 3 TBK 2(C32 H42 N6 O5 S) FORMUL 5 HOH *21(H2 O) HELIX 1 AA1 PRO A 606 LEU A 610 5 5 HELIX 2 AA2 THR A 662 ARG A 678 1 17 HELIX 3 AA3 ASP A 708 ALA A 715 1 8 HELIX 4 AA4 SER A 739 THR A 759 1 21 HELIX 5 AA5 ALA A 768 ARG A 770 5 3 HELIX 6 AA6 GLU A 776 PHE A 778 5 3 HELIX 7 AA7 ARG A 789 TYR A 796 5 8 HELIX 8 AA8 PRO A 806 MET A 810 5 5 HELIX 9 AA9 ALA A 811 GLY A 818 1 8 HELIX 10 AB1 THR A 821 MET A 838 1 18 HELIX 11 AB2 THR A 849 ASP A 863 1 15 HELIX 12 AB3 PRO A 877 TRP A 888 1 12 HELIX 13 AB4 GLU A 891 ARG A 895 5 5 HELIX 14 AB5 PRO A 897 ALA A 906 1 10 HELIX 15 AB6 PRO B 606 LEU B 610 5 5 HELIX 16 AB7 THR B 662 ARG B 678 1 17 HELIX 17 AB8 ASP B 708 ALA B 715 1 8 HELIX 18 AB9 SER B 739 THR B 759 1 21 HELIX 19 AC1 ALA B 768 ARG B 770 5 3 HELIX 20 AC2 GLU B 776 PHE B 778 5 3 HELIX 21 AC3 ARG B 789 TYR B 796 5 8 HELIX 22 AC4 PRO B 806 MET B 810 5 5 HELIX 23 AC5 ALA B 811 GLY B 818 1 8 HELIX 24 AC6 THR B 821 MET B 838 1 18 HELIX 25 AC7 THR B 849 ASP B 863 1 15 HELIX 26 AC8 PRO B 877 TRP B 888 1 12 HELIX 27 AC9 GLU B 891 ARG B 895 5 5 HELIX 28 AD1 PRO B 897 LEU B 910 1 14 SHEET 1 AA1 5 ARG A 611 LEU A 616 0 SHEET 2 AA1 5 GLU A 623 VAL A 629 -1 O LEU A 626 N GLU A 614 SHEET 3 AA1 5 LEU A 650 LEU A 657 -1 O VAL A 654 N HIS A 625 SHEET 4 AA1 5 LEU A 697 ASP A 702 -1 O THR A 701 N ALA A 653 SHEET 5 AA1 5 LEU A 687 CYS A 691 -1 N LEU A 688 O ILE A 700 SHEET 1 AA2 2 GLN A 717 LEU A 718 0 SHEET 2 AA2 2 THR A 737 ILE A 738 1 O ILE A 738 N GLN A 717 SHEET 1 AA3 2 CYS A 772 VAL A 774 0 SHEET 2 AA3 2 ILE A 780 ILE A 782 -1 O LYS A 781 N LEU A 773 SHEET 1 AA4 5 ARG B 611 LYS B 615 0 SHEET 2 AA4 5 VAL B 624 GLU B 628 -1 O GLU B 628 N ARG B 611 SHEET 3 AA4 5 VAL B 652 ILE B 656 -1 O VAL B 654 N HIS B 625 SHEET 4 AA4 5 CYS B 698 ASP B 702 -1 O THR B 701 N ALA B 653 SHEET 5 AA4 5 LEU B 687 CYS B 691 -1 N LEU B 688 O ILE B 700 SHEET 1 AA5 2 GLN B 717 LEU B 718 0 SHEET 2 AA5 2 THR B 737 ILE B 738 1 O ILE B 738 N GLN B 717 SHEET 1 AA6 2 CYS B 772 VAL B 774 0 SHEET 2 AA6 2 ILE B 780 ILE B 782 -1 O LYS B 781 N LEU B 773 CISPEP 1 ASP A 695 PRO A 696 0 -0.80 CISPEP 2 GLY A 735 PRO A 736 0 -3.03 CISPEP 3 ASP B 695 PRO B 696 0 -0.61 CISPEP 4 GLY B 735 PRO B 736 0 -7.12 SITE 1 AC1 13 VAL A 624 ALA A 653 GLU A 672 MET A 676 SITE 2 AC1 13 ILE A 685 THR A 701 ASP A 702 MET A 704 SITE 3 AC1 13 PHE A 762 ALA A 783 ASP A 784 PHE A 785 SITE 4 AC1 13 GLY A 786 SITE 1 AC2 10 ALA B 653 GLU B 672 MET B 676 THR B 701 SITE 2 AC2 10 ASP B 702 MET B 704 ALA B 783 ASP B 784 SITE 3 AC2 10 PHE B 785 GLY B 786 CRYST1 56.223 120.402 62.095 90.00 111.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017786 0.000000 0.006952 0.00000 SCALE2 0.000000 0.008306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017291 0.00000