HEADER TRANSPORT PROTEIN 21-DEC-20 7BCN TITLE CRYSTAL STRUCTURE OF THE SUGAR ACID BINDING PROTEIN DCTPAM FROM TITLE 2 ADVENELLA MIMIGARDEFORDENSIS STRAIN DPN7T IN COMPLEX WITH XYLONIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRAP TRANSPORTER SOLUTE RECEPTOR DCTP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE TRAP TRANSPORTER SOLUTE RECEPTOR,DCTP FAMILY; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADVENELLA MIMIGARDEFORDENSIS DPN7; SOURCE 3 ORGANISM_TAXID: 1247726; SOURCE 4 GENE: MIM_C39430; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPORT BINDING PROTEIN SUGAR BINDING, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.SCHAEFER,C.MEINERT,S.KOBUS,A.HOEPPNER,S.H.SMITS,A.STEINBUECHEL REVDAT 3 31-JAN-24 7BCN 1 REMARK REVDAT 2 25-AUG-21 7BCN 1 JRNL REVDAT 1 14-APR-21 7BCN 0 JRNL AUTH L.SCHAFER,C.MEINERT-BERNING,S.KOBUS,A.HOPPNER,S.H.J.SMITS, JRNL AUTH 2 A.STEINBUCHEL JRNL TITL CRYSTAL STRUCTURE OF THE SUGAR ACID-BINDING PROTEIN CXAP JRNL TITL 2 FROM A TRAP TRANSPORTER IN ADVENELLA MIMIGARDEFORDENSIS JRNL TITL 3 STRAIN DPN7 T . JRNL REF FEBS J. V. 288 4905 2021 JRNL REFN ISSN 1742-464X JRNL PMID 33630388 JRNL DOI 10.1111/FEBS.15789 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 72563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.470 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0600 - 3.9900 0.99 5602 143 0.1647 0.1857 REMARK 3 2 3.9900 - 3.1700 0.99 5584 152 0.1623 0.1738 REMARK 3 3 3.1700 - 2.7700 0.99 5567 134 0.1639 0.1935 REMARK 3 4 2.7700 - 2.5200 0.96 5441 138 0.1624 0.2226 REMARK 3 5 2.5200 - 2.3400 0.82 4641 121 0.1619 0.1812 REMARK 3 6 2.3400 - 2.2000 0.95 5387 125 0.1647 0.2391 REMARK 3 7 2.2000 - 2.0900 0.96 5449 131 0.1654 0.1893 REMARK 3 8 2.0900 - 2.0000 0.97 5469 163 0.1768 0.1975 REMARK 3 9 2.0000 - 1.9200 0.97 5582 117 0.1900 0.2462 REMARK 3 10 1.9200 - 1.8600 0.98 5471 147 0.2043 0.2513 REMARK 3 11 1.8600 - 1.8000 0.97 5534 127 0.2117 0.2361 REMARK 3 12 1.8000 - 1.7500 0.98 5501 133 0.2418 0.2965 REMARK 3 13 1.7500 - 1.7000 0.98 5543 161 0.2749 0.3186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.188 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.411 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2469 REMARK 3 ANGLE : 1.250 3332 REMARK 3 CHIRALITY : 0.057 379 REMARK 3 PLANARITY : 0.008 431 REMARK 3 DIHEDRAL : 6.637 352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292113148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 159256 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 32.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05716 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000 PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.05500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.82250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.17450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.82250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.05500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.17450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 LEU A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 THR A 14 REMARK 465 ALA A 15 REMARK 465 VAL A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 MET A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 VAL A 26 REMARK 465 TRP A 27 REMARK 465 ALA A 28 REMARK 465 LYS A 29 REMARK 465 GLY A 340 REMARK 465 ALA A 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG22 THR A 159 HE21 GLN A 215 1.33 REMARK 500 OG1 THR A 48 HE22 GLN A 275 1.50 REMARK 500 O TRP A 252 HE22 GLN A 255 1.53 REMARK 500 O TRP A 252 NE2 GLN A 255 1.60 REMARK 500 NZ LYS A 337 O HOH A 501 1.96 REMARK 500 O HOH A 784 O HOH A 809 2.07 REMARK 500 O HOH A 601 O HOH A 687 2.07 REMARK 500 O HOH A 554 O HOH A 829 2.08 REMARK 500 OE1 GLU A 121 O HOH A 502 2.08 REMARK 500 O ASP A 30 O HOH A 503 2.11 REMARK 500 O LYS A 311 O HOH A 504 2.12 REMARK 500 O HOH A 653 O HOH A 859 2.13 REMARK 500 O HOH A 726 O HOH A 859 2.14 REMARK 500 O HOH A 564 O HOH A 874 2.14 REMARK 500 O HOH A 639 O HOH A 811 2.15 REMARK 500 OE2 GLU A 208 O HOH A 505 2.18 REMARK 500 NZ LYS A 250 O HOH A 506 2.19 REMARK 500 O HOH A 687 O HOH A 787 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE21 GLN A 258 HZ1 LYS A 337 3454 0.57 REMARK 500 NE2 GLN A 258 HZ1 LYS A 337 3454 1.07 REMARK 500 HE21 GLN A 258 NZ LYS A 337 3454 1.15 REMARK 500 NE2 GLN A 258 NZ LYS A 337 3454 1.90 REMARK 500 O HOH A 794 O HOH A 808 4545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 337 CE LYS A 337 NZ 0.300 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 280 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 LYS A 337 CD - CE - NZ ANGL. DEV. = -33.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 149 -177.72 -175.66 REMARK 500 ASN A 294 30.09 70.43 REMARK 500 SER A 301 171.82 -58.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 970 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 971 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 972 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A 973 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 974 DISTANCE = 7.51 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TK8 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BBR RELATED DB: PDB REMARK 900 PROTEIN STRUCTURE DIFFERENT LIGAND DBREF 7BCN A 3 341 UNP R4JTF7 R4JTF7_9BURK 1 339 SEQRES 1 A 339 MET LYS ARG LEU LYS LYS THR VAL ALA SER LEU THR ALA SEQRES 2 A 339 VAL ALA LEU LEU GLY MET GLY SER ALA ALA VAL TRP ALA SEQRES 3 A 339 LYS ASP ILE LYS PRO ARG ILE ILE ARG PHE GLY TYR GLY SEQRES 4 A 339 LEU ALA ASP ASP SER PRO THR GLY LYS ALA SER ALA HIS SEQRES 5 A 339 PHE ALA GLU VAL VAL SER LYS LEU SER ASP GLY LYS MET SEQRES 6 A 339 LYS VAL LYS THR PHE GLY ASN GLY ALA LEU GLY PRO ASP SEQRES 7 A 339 GLU GLN LEU ILE ASN SER LEU ILE SER GLY SER GLY GLU SEQRES 8 A 339 ILE THR PHE VAL SER THR ALA PRO ILE ALA SER LEU ILE SEQRES 9 A 339 PRO GLU PHE GLY VAL PHE ASP LEU PRO PHE LEU PHE ASP SEQRES 10 A 339 ASN GLU LYS VAL ALA ASP THR VAL LEU ASP GLY PRO GLU SEQRES 11 A 339 GLY LYS LYS LEU LEU ASP LYS LEU PRO ALA LYS GLY LEU SEQRES 12 A 339 ILE GLY LEU ASN TYR TRP GLU ASN GLY PHE ARG ASN ILE SEQRES 13 A 339 THR ASN SER ARG HIS GLU ILE SER LYS LEU ASP ASP ILE SEQRES 14 A 339 GLY GLY ILE LYS LEU ARG VAL MET GLN ASN GLN VAL ALA SEQRES 15 A 339 LEU SER VAL PHE LYS GLY LEU GLY ALA ASN ALA ILE PRO SEQRES 16 A 339 MET PRO PHE THR GLU LEU PHE THR ALA LEU GLU THR LYS SEQRES 17 A 339 THR VAL ASP GLY GLN GLU ASN PRO LEU SER THR ILE GLN SEQRES 18 A 339 THR SER LYS PHE TYR GLU VAL GLN PRO TYR LEU THR LEU SEQRES 19 A 339 SER ASN HIS VAL TYR THR PRO PHE VAL PHE LEU ALA SER SEQRES 20 A 339 LYS LYS TRP PHE ASP GLN LEU SER GLN ASP GLU LYS ASP SEQRES 21 A 339 VAL ILE THR GLN ALA ALA ALA ASP SER GLN ALA PHE GLN SEQRES 22 A 339 ARG LYS ALA SER ARG GLN GLY ASN GLU ASP ALA LEU LYS SEQRES 23 A 339 TYR LEU LYS GLU HIS ASN VAL LYS VAL ALA GLU PHE SER SEQRES 24 A 339 THR GLU GLU ARG GLU LYS ILE ARG GLU LYS VAL ALA PRO SEQRES 25 A 339 ILE VAL GLU SER LEU LYS ALA LYS ILE GLY LYS GLU THR SEQRES 26 A 339 VAL GLU GLY VAL LEU ASP ALA ALA LYS LYS ALA SER GLY SEQRES 27 A 339 ALA HET TK8 A 401 28 HETNAM TK8 D-XYLONIC ACID HETSYN TK8 (2~{R},3~{S},4~{R})-2,3,4,5-TETRAKIS(OXIDANYL)PENTANOIC HETSYN 2 TK8 ACID; (2R,3S,4R)-2,3,4,5-TETRAHYDROXYPENTANOIC ACID; HETSYN 3 TK8 XYLONIC ACID FORMUL 2 TK8 C5 H10 O6 FORMUL 3 HOH *474(H2 O) HELIX 1 AA1 SER A 46 SER A 63 1 18 HELIX 2 AA2 PRO A 79 GLY A 90 1 12 HELIX 3 AA3 THR A 99 ALA A 103 1 5 HELIX 4 AA4 SER A 104 LEU A 105 5 2 HELIX 5 AA5 ILE A 106 LEU A 114 5 9 HELIX 6 AA6 ASN A 120 GLY A 130 1 11 HELIX 7 AA7 GLY A 130 ASP A 138 1 9 HELIX 8 AA8 LYS A 139 LYS A 143 5 5 HELIX 9 AA9 LYS A 167 GLY A 172 5 6 HELIX 10 AB1 ASN A 181 LEU A 191 1 11 HELIX 11 AB2 PRO A 199 THR A 201 5 3 HELIX 12 AB3 GLU A 202 THR A 209 1 8 HELIX 13 AB4 PRO A 218 SER A 225 1 8 HELIX 14 AB5 LYS A 226 GLN A 231 5 6 HELIX 15 AB6 LYS A 250 GLN A 255 1 6 HELIX 16 AB7 SER A 257 HIS A 293 1 37 HELIX 17 AB8 SER A 301 GLY A 324 1 24 HELIX 18 AB9 GLY A 324 SER A 339 1 16 SHEET 1 AA1 5 MET A 67 PHE A 72 0 SHEET 2 AA1 5 ARG A 34 GLY A 39 1 N ILE A 36 O LYS A 70 SHEET 3 AA1 5 ILE A 94 SER A 98 1 O ILE A 94 N ARG A 37 SHEET 4 AA1 5 TYR A 241 SER A 249 -1 O LEU A 247 N THR A 95 SHEET 5 AA1 5 LEU A 145 PHE A 155 -1 N ASN A 149 O PHE A 246 SHEET 1 AA2 4 GLY A 214 ASN A 217 0 SHEET 2 AA2 4 ASN A 157 ASN A 160 -1 N THR A 159 O GLN A 215 SHEET 3 AA2 4 TYR A 233 THR A 235 -1 O THR A 235 N ILE A 158 SHEET 4 AA2 4 LYS A 296 ALA A 298 1 O ALA A 298 N LEU A 234 SHEET 1 AA3 2 LYS A 175 VAL A 178 0 SHEET 2 AA3 2 ASN A 194 PRO A 197 1 O ILE A 196 N LEU A 176 SITE 1 AC1 14 GLY A 41 LEU A 42 ASP A 80 SER A 98 SITE 2 AC1 14 ASN A 153 ARG A 156 ARG A 177 MET A 179 SITE 3 AC1 14 PHE A 200 ASN A 217 PHE A 244 HOH A 592 SITE 4 AC1 14 HOH A 636 HOH A 704 CRYST1 58.110 62.349 97.645 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010241 0.00000