HEADER HYDROLASE 21-DEC-20 7BCU TITLE THE ADDUCT OF NAMI-A WITH HEN EGG WHITE LYSOZYME AT 1.5 HOURS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_TAXID: 9031; SOURCE 4 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9031 KEYWDS RU(III), NAMI-A, ANTI-CANCER, ADDUCT, HEWL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CHINIADIS,P.GIASTAS,I.BRATSOS,A.PAPAKYRIAKOU REVDAT 2 31-JAN-24 7BCU 1 REMARK REVDAT 1 28-JUL-21 7BCU 0 JRNL AUTH L.CHINIADIS,P.GIASTAS,I.BRATSOS,A.PAPAKYRIAKOU JRNL TITL INSIGHTS INTO THE PROTEIN RUTHENATION MECHANISM BY JRNL TITL 2 ANTIMETASTATIC METALLODRUGS: HIGH-RESOLUTION X-RAY JRNL TITL 3 STRUCTURES OF THE ADDUCT FORMED BETWEEN HEN EGG-WHITE JRNL TITL 4 LYSOZYME AND NAMI-A AT VARIOUS TIME POINTS. JRNL REF INORG.CHEM. V. 60 10729 2021 JRNL REFN ISSN 0020-1669 JRNL PMID 34197115 JRNL DOI 10.1021/ACS.INORGCHEM.1C01441 REMARK 2 REMARK 2 RESOLUTION. 0.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 65524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 3136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.0000 - 2.7455 1.00 3123 143 0.1413 0.1639 REMARK 3 2 2.7455 - 2.1793 1.00 2946 145 0.1387 0.1801 REMARK 3 3 2.1793 - 1.9039 1.00 2930 119 0.1239 0.1372 REMARK 3 4 1.9039 - 1.7298 1.00 2884 145 0.1295 0.1441 REMARK 3 5 1.7298 - 1.6058 1.00 2887 151 0.1176 0.1322 REMARK 3 6 1.6058 - 1.5112 1.00 2854 128 0.1155 0.1429 REMARK 3 7 1.5112 - 1.4355 1.00 2862 151 0.1127 0.1104 REMARK 3 8 1.4355 - 1.3730 1.00 2873 133 0.1142 0.1294 REMARK 3 9 1.3730 - 1.3201 1.00 2846 138 0.1128 0.1113 REMARK 3 10 1.3201 - 1.2746 1.00 2827 154 0.1095 0.1159 REMARK 3 11 1.2746 - 1.2347 1.00 2841 143 0.1096 0.1355 REMARK 3 12 1.2347 - 1.1994 1.00 2825 146 0.1099 0.1201 REMARK 3 13 1.1994 - 1.1678 1.00 2837 131 0.1053 0.1105 REMARK 3 14 1.1678 - 1.1393 1.00 2802 156 0.1064 0.1180 REMARK 3 15 1.1393 - 1.1134 1.00 2842 125 0.1070 0.1403 REMARK 3 16 1.1134 - 1.0897 1.00 2768 170 0.1125 0.1183 REMARK 3 17 1.0897 - 1.0679 1.00 2834 154 0.1186 0.1258 REMARK 3 18 1.0679 - 1.0478 1.00 2803 130 0.1237 0.1351 REMARK 3 19 1.0478 - 1.0291 0.99 2770 162 0.1347 0.1620 REMARK 3 20 1.0291 - 1.0116 0.99 2777 159 0.1574 0.1647 REMARK 3 21 1.0116 - 0.9953 0.97 2707 124 0.1836 0.1981 REMARK 3 22 0.9953 - 0.9800 0.91 2550 129 0.2143 0.2044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1097 REMARK 3 ANGLE : 0.861 1497 REMARK 3 CHIRALITY : 0.086 155 REMARK 3 PLANARITY : 0.005 197 REMARK 3 DIHEDRAL : 11.682 411 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BCU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292113149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65524 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.980 REMARK 200 RESOLUTION RANGE LOW (A) : 33.853 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 23.00 REMARK 200 R MERGE (I) : 0.06844 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17920 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 193L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL 0.7-1.5 M, 0.1 M NA ACETATE, PH REMARK 280 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.82150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.70950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.70950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.23225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.70950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.70950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.41075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.70950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.70950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.23225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.70950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.70950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.41075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.82150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -247.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 355 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 444 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 477 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 73 NE CZ NH1 NH2 REMARK 470 ARG A 128 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 402 O HOH A 422 2.08 REMARK 500 O HOH A 343 O HOH A 429 2.15 REMARK 500 O HOH A 437 O HOH A 471 2.16 REMARK 500 O HOH A 340 O HOH A 440 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 453 O HOH A 453 8555 2.04 REMARK 500 O HOH A 402 O HOH A 402 7555 2.07 REMARK 500 O HOH A 348 O HOH A 469 7555 2.10 REMARK 500 OG SER A 86 O HOH A 469 7555 2.11 REMARK 500 O ARG A 128 O HOH A 440 8554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 485 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 486 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 487 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 488 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 489 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 490 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 491 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 492 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 493 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A 494 DISTANCE = 7.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 226 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 19 OD1 REMARK 620 2 GLY A 22 O 134.4 REMARK 620 3 HOH A 476 O 84.2 73.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 223 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 57 O REMARK 620 2 HOH A 313 O 124.0 REMARK 620 3 HOH A 343 O 67.5 149.9 REMARK 620 4 HOH A 367 O 149.9 77.2 83.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 222 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 90.4 REMARK 620 3 SER A 72 OG 85.7 165.7 REMARK 620 4 ARG A 73 O 91.7 93.9 99.9 REMARK 620 5 HOH A 371 O 99.6 86.2 80.9 168.7 REMARK 620 6 HOH A 403 O 173.0 96.2 87.4 90.1 78.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RU A 207 RU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IMD A 201 N1 REMARK 620 2 DMS A 202 S 177.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RU A 214 RU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IMD A 208 N1 REMARK 620 2 DMS A 209 S 177.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RU A 221 RU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IMD A 215 N1 REMARK 620 2 DMS A 216 S 178.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 225 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 353 O REMARK 620 2 HOH A 423 O 110.2 REMARK 620 3 HOH A 461 O 56.7 113.8 REMARK 620 N 1 2 DBREF 7BCU A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET IMD A 201 5 HET DMS A 202 4 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HET RU A 207 1 HET IMD A 208 5 HET DMS A 209 4 HET CL A 210 1 HET CL A 211 1 HET CL A 212 1 HET CL A 213 1 HET RU A 214 1 HET IMD A 215 5 HET DMS A 216 4 HET CL A 217 1 HET CL A 218 1 HET CL A 219 1 HET CL A 220 1 HET RU A 221 1 HET NA A 222 1 HET NA A 223 1 HET NA A 224 1 HET NA A 225 1 HET NA A 226 1 HET CL A 227 1 HET CL A 228 1 HET CL A 229 1 HET CL A 230 1 HET CL A 231 1 HET CL A 232 1 HET CL A 233 1 HET CL A 234 1 HET CL A 235 1 HETNAM IMD IMIDAZOLE HETNAM DMS DIMETHYL SULFOXIDE HETNAM CL CHLORIDE ION HETNAM RU RUTHENIUM ION HETNAM NA SODIUM ION FORMUL 2 IMD 3(C3 H5 N2 1+) FORMUL 3 DMS 3(C2 H6 O S) FORMUL 4 CL 21(CL 1-) FORMUL 8 RU 3(RU 3+) FORMUL 23 NA 5(NA 1+) FORMUL 37 HOH *194(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.04 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.04 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 LINK O LYS A 13 NA NA A 224 1555 1555 2.90 LINK OD1 ASN A 19 NA NA A 226 1555 1555 2.63 LINK O GLY A 22 NA NA A 226 1555 1555 3.07 LINK O GLN A 57 NA NA A 223 1555 1555 2.82 LINK O SER A 60 NA NA A 222 1555 1555 2.35 LINK O CYS A 64 NA NA A 222 1555 1555 2.39 LINK OG SER A 72 NA NA A 222 1555 1555 2.47 LINK O ARG A 73 NA NA A 222 1555 1555 2.43 LINK N1 IMD A 201 RU RU A 207 1555 1555 2.13 LINK S DMS A 202 RU RU A 207 1555 1555 2.32 LINK N1 IMD A 208 RU RU A 214 1555 1555 2.10 LINK S DMS A 209 RU RU A 214 1555 1555 2.27 LINK N1 IMD A 215 RU RU A 221 1555 1555 2.10 LINK S DMS A 216 RU RU A 221 1555 1555 2.28 LINK NA NA A 222 O HOH A 371 1555 1555 2.53 LINK NA NA A 222 O HOH A 403 1555 1555 2.39 LINK NA NA A 223 O HOH A 313 1555 1555 2.92 LINK NA NA A 223 O HOH A 343 1555 1555 2.00 LINK NA NA A 223 O HOH A 367 1555 1555 2.77 LINK NA NA A 225 O HOH A 353 1555 1554 3.06 LINK NA NA A 225 O HOH A 423 1555 1555 2.42 LINK NA NA A 225 O HOH A 461 1555 1554 2.39 LINK NA NA A 226 O HOH A 476 1555 4545 2.52 CRYST1 77.419 77.419 37.643 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012917 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026565 0.00000