HEADER TRANSFERASE 22-DEC-20 7BDW TITLE CRYSTAL STRUCTURE OF MYCOBACTERIAL PPTAB IN COMPLEX WITH ACP AND TITLE 2 COMPOUND 8918 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE 4'-PHOSPHOPANTETHEINYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PHTHIOCEROL SYNTHESIS POLYKETIDE SYNTHASE TYPE I PPSC; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 8 ORGANISM_TAXID: 1773; SOURCE 9 GENE: PPSC, CAB90_03283; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PSEUDOMONAS AERUGINOSA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CARIVENC,M.C.NGUYEN,L.MOUREY,J.D.PEDELACQ REVDAT 2 31-JAN-24 7BDW 1 REMARK REVDAT 1 10-NOV-21 7BDW 0 JRNL AUTH C.CARIVENC,L.MAVEYRAUD,C.BLANGER,S.BALLEREAU,C.ROY-CAMILLE, JRNL AUTH 2 M.C.NGUYEN,Y.GENISSON,C.GUILHOT,C.CHALUT,J.D.PEDELACQ, JRNL AUTH 3 L.MOUREY JRNL TITL PHOSPHOPANTETHEINYL TRANSFERASE BINDING AND INHIBITION BY JRNL TITL 2 AMIDINO-UREA AND HYDROXYPYRIMIDINETHIONE COMPOUNDS. JRNL REF SCI REP V. 11 18042 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 34508141 JRNL DOI 10.1038/S41598-021-97197-4 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 11761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1300 - 6.2900 1.00 1302 149 0.1707 0.2646 REMARK 3 2 6.2800 - 4.9900 1.00 1324 143 0.1913 0.1660 REMARK 3 3 4.9900 - 4.3600 1.00 1306 148 0.1534 0.1916 REMARK 3 4 4.3600 - 3.9600 1.00 1321 143 0.1714 0.2091 REMARK 3 5 3.9600 - 3.6800 1.00 1306 140 0.1877 0.1969 REMARK 3 6 3.6800 - 3.4600 1.00 1327 150 0.2104 0.2693 REMARK 3 7 3.4600 - 3.2900 1.00 1320 148 0.2335 0.2706 REMARK 3 8 3.2900 - 3.1500 1.00 1289 142 0.2863 0.3624 REMARK 3 9 3.1500 - 3.0300 1.00 1327 150 0.2742 0.3028 REMARK 3 10 3.0300 - 2.9200 1.00 1322 145 0.2774 0.3571 REMARK 3 11 2.9200 - 2.8300 1.00 1295 148 0.2999 0.3630 REMARK 3 12 2.8300 - 2.7500 1.00 1331 149 0.3335 0.3728 REMARK 3 13 2.7500 - 2.6800 1.00 1292 145 0.3561 0.4059 REMARK 3 14 2.6800 - 2.6100 1.00 1324 141 0.3774 0.4678 REMARK 3 15 2.6100 - 2.5500 0.85 1120 122 0.4297 0.4924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2333 REMARK 3 ANGLE : 0.544 3191 REMARK 3 CHIRALITY : 0.042 370 REMARK 3 PLANARITY : 0.003 407 REMARK 3 DIHEDRAL : 11.558 318 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8864 25.0918 -26.0256 REMARK 3 T TENSOR REMARK 3 T11: 0.9040 T22: 0.7113 REMARK 3 T33: 0.5179 T12: 0.0665 REMARK 3 T13: -0.0667 T23: 0.0748 REMARK 3 L TENSOR REMARK 3 L11: 9.8826 L22: 6.5850 REMARK 3 L33: 4.8264 L12: 1.6620 REMARK 3 L13: 2.6530 L23: 2.0675 REMARK 3 S TENSOR REMARK 3 S11: -0.1219 S12: 0.7586 S13: 0.7371 REMARK 3 S21: -0.9537 S22: -0.0268 S23: 0.1477 REMARK 3 S31: -1.4187 S32: -0.3654 S33: 0.1921 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2920 25.0625 -14.0624 REMARK 3 T TENSOR REMARK 3 T11: 0.7762 T22: 0.5459 REMARK 3 T33: 0.5079 T12: -0.0623 REMARK 3 T13: -0.0637 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 6.2749 L22: 6.4107 REMARK 3 L33: 1.1205 L12: 0.3370 REMARK 3 L13: 0.5816 L23: -2.1621 REMARK 3 S TENSOR REMARK 3 S11: -0.0994 S12: 0.0105 S13: 0.5781 REMARK 3 S21: 0.8088 S22: -0.2576 S23: -0.5271 REMARK 3 S31: -0.9608 S32: 0.5319 S33: 0.2828 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4475 25.8454 -16.8154 REMARK 3 T TENSOR REMARK 3 T11: 0.9250 T22: 0.4544 REMARK 3 T33: 0.5101 T12: -0.1043 REMARK 3 T13: 0.0165 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 9.3408 L22: 7.1078 REMARK 3 L33: 3.8251 L12: -7.2614 REMARK 3 L13: 1.8946 L23: -0.1677 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0878 S13: 0.5013 REMARK 3 S21: 0.2257 S22: -0.1923 S23: -0.0875 REMARK 3 S31: -0.4780 S32: 0.4378 S33: 0.1717 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1679 22.9274 -13.5976 REMARK 3 T TENSOR REMARK 3 T11: 0.5862 T22: 0.3636 REMARK 3 T33: 0.4355 T12: 0.1059 REMARK 3 T13: 0.0686 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.5727 L22: 5.4718 REMARK 3 L33: 4.8485 L12: 2.9893 REMARK 3 L13: 1.4054 L23: -1.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.4140 S13: 0.2157 REMARK 3 S21: 0.6368 S22: 0.0065 S23: 0.5299 REMARK 3 S31: -0.2649 S32: -0.0499 S33: 0.0155 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3368 7.3832 -18.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.4454 T22: 0.3870 REMARK 3 T33: 0.4435 T12: -0.0263 REMARK 3 T13: 0.0392 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 5.4371 L22: 3.8690 REMARK 3 L33: 5.9484 L12: 0.1586 REMARK 3 L13: -1.6561 L23: 0.6191 REMARK 3 S TENSOR REMARK 3 S11: 0.3130 S12: -0.1165 S13: -0.2142 REMARK 3 S21: 0.3902 S22: -0.1967 S23: 0.4144 REMARK 3 S31: 0.0414 S32: -0.6572 S33: -0.1139 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2071 THROUGH 2097 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4808 1.6830 -7.5391 REMARK 3 T TENSOR REMARK 3 T11: 0.8875 T22: 0.7969 REMARK 3 T33: 0.8130 T12: 0.0733 REMARK 3 T13: -0.3211 T23: -0.0510 REMARK 3 L TENSOR REMARK 3 L11: 7.2711 L22: 8.9804 REMARK 3 L33: 1.8436 L12: 0.6590 REMARK 3 L13: 0.9008 L23: -1.5205 REMARK 3 S TENSOR REMARK 3 S11: 1.1824 S12: 0.0750 S13: 0.0787 REMARK 3 S21: 0.6874 S22: -0.0230 S23: -2.1015 REMARK 3 S31: 0.5193 S32: 0.7206 S33: 0.0845 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2098 THROUGH 2119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7815 1.3198 -12.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.9046 T22: 0.5721 REMARK 3 T33: 0.4708 T12: -0.0311 REMARK 3 T13: -0.1070 T23: -0.0709 REMARK 3 L TENSOR REMARK 3 L11: 5.5271 L22: 8.2187 REMARK 3 L33: 9.1553 L12: 2.0600 REMARK 3 L13: 2.6167 L23: -2.8614 REMARK 3 S TENSOR REMARK 3 S11: 0.4378 S12: -0.4100 S13: -0.6397 REMARK 3 S21: 0.2320 S22: 0.3561 S23: -0.1808 REMARK 3 S31: 1.3771 S32: -0.7891 S33: -0.5816 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2120 THROUGH 2145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1540 -0.8682 -1.5730 REMARK 3 T TENSOR REMARK 3 T11: 1.2706 T22: 0.9105 REMARK 3 T33: 0.8543 T12: -0.0254 REMARK 3 T13: -0.0352 T23: 0.1404 REMARK 3 L TENSOR REMARK 3 L11: 5.0048 L22: 3.1587 REMARK 3 L33: 6.6231 L12: 3.9729 REMARK 3 L13: 0.5487 L23: -0.0313 REMARK 3 S TENSOR REMARK 3 S11: 0.4892 S12: 0.1110 S13: -0.2604 REMARK 3 S21: 2.5838 S22: 0.5799 S23: 0.3188 REMARK 3 S31: -0.2239 S32: -1.7241 S33: -0.8926 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292113159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11769 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 41.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6RCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CACODYLATE 30 % PEG 8K 0.2 M REMARK 280 (NH4)2SO4, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.42000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.28300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.51850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.28300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.51850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 ALA A 224 REMARK 465 LEU A 225 REMARK 465 GLU A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 MET B 2036 REMARK 465 GLY B 2037 REMARK 465 SER B 2038 REMARK 465 SER B 2039 REMARK 465 HIS B 2040 REMARK 465 HIS B 2041 REMARK 465 HIS B 2042 REMARK 465 HIS B 2043 REMARK 465 HIS B 2044 REMARK 465 HIS B 2045 REMARK 465 SER B 2046 REMARK 465 SER B 2047 REMARK 465 GLY B 2048 REMARK 465 LEU B 2049 REMARK 465 VAL B 2050 REMARK 465 PRO B 2051 REMARK 465 ARG B 2052 REMARK 465 GLY B 2053 REMARK 465 SER B 2054 REMARK 465 HIS B 2055 REMARK 465 MET B 2056 REMARK 465 ALA B 2057 REMARK 465 ILE B 2058 REMARK 465 ARG B 2059 REMARK 465 ALA B 2060 REMARK 465 GLN B 2061 REMARK 465 LEU B 2062 REMARK 465 ASP B 2063 REMARK 465 ALA B 2064 REMARK 465 LEU B 2065 REMARK 465 ASP B 2066 REMARK 465 ALA B 2067 REMARK 465 ALA B 2068 REMARK 465 GLU B 2069 REMARK 465 ARG B 2070 REMARK 465 ASP B 2146 REMARK 465 TYR B 2147 REMARK 465 ALA B 2148 REMARK 465 THR B 2149 REMARK 465 PRO B 2150 REMARK 465 ALA B 2151 REMARK 465 ALA B 2152 REMARK 465 ALA B 2153 REMARK 465 GLN B 2154 REMARK 465 GLU B 2155 REMARK 465 ILE B 2156 REMARK 465 SER B 2157 REMARK 465 ASP B 2158 REMARK 465 THR B 2159 REMARK 465 GLU B 2160 REMARK 465 PRO B 2161 REMARK 465 GLU B 2162 REMARK 465 LEU B 2163 REMARK 465 SER B 2164 REMARK 465 ASP B 2165 REMARK 465 GLU B 2166 REMARK 465 GLU B 2167 REMARK 465 MET B 2168 REMARK 465 ASP B 2169 REMARK 465 LEU B 2170 REMARK 465 LEU B 2171 REMARK 465 ALA B 2172 REMARK 465 ASP B 2173 REMARK 465 LEU B 2174 REMARK 465 VAL B 2175 REMARK 465 ASP B 2176 REMARK 465 ALA B 2177 REMARK 465 SER B 2178 REMARK 465 GLU B 2179 REMARK 465 LEU B 2180 REMARK 465 GLU B 2181 REMARK 465 ALA B 2182 REMARK 465 ALA B 2183 REMARK 465 THR B 2184 REMARK 465 ARG B 2185 REMARK 465 GLY B 2186 REMARK 465 GLU B 2187 REMARK 465 SER B 2188 REMARK 465 THR B 2189 REMARK 465 SER B 2190 REMARK 465 GLY B 2191 REMARK 465 SER B 2192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 LEU A 221 CG CD1 CD2 REMARK 470 ARG B2087 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 54 OD1 ASP A 116 3554 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 115 89.98 -68.93 REMARK 500 THR A 163 -38.78 -157.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 COA A 301 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 90 O REMARK 620 2 HIS A 90 ND1 75.4 REMARK 620 3 COA A 301 O1A 89.2 74.0 REMARK 620 4 HOH A 403 O 74.7 88.3 158.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 111 OD1 REMARK 620 2 COA A 301 O2A 78.5 REMARK 620 N 1 DBREF 7BDW A 1 219 UNP B1MD73 B1MD73_MYCA9 1 219 DBREF1 7BDW B 2060 2188 UNP A0A2I7WB16_MYCTX DBREF2 7BDW B A0A2I7WB16 67 195 SEQADV 7BDW LYS A 220 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW LEU A 221 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW ALA A 222 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW ALA A 223 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW ALA A 224 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW LEU A 225 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW GLU A 226 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW HIS A 227 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW HIS A 228 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW HIS A 229 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW HIS A 230 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW HIS A 231 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW HIS A 232 UNP B1MD73 EXPRESSION TAG SEQADV 7BDW MET B 2036 UNP A0A2I7WB1 INITIATING METHIONINE SEQADV 7BDW GLY B 2037 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW SER B 2038 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW SER B 2039 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW HIS B 2040 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW HIS B 2041 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW HIS B 2042 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW HIS B 2043 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW HIS B 2044 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW HIS B 2045 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW SER B 2046 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW SER B 2047 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW GLY B 2048 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW LEU B 2049 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW VAL B 2050 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW PRO B 2051 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW ARG B 2052 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW GLY B 2053 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW SER B 2054 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW HIS B 2055 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW MET B 2056 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW ALA B 2057 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW ILE B 2058 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW ARG B 2059 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW ALA B 2105 UNP A0A2I7WB1 SER 112 ENGINEERED MUTATION SEQADV 7BDW THR B 2189 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW SER B 2190 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW GLY B 2191 UNP A0A2I7WB1 EXPRESSION TAG SEQADV 7BDW SER B 2192 UNP A0A2I7WB1 EXPRESSION TAG SEQRES 1 A 232 MET PRO VAL THR ASP GLN LEU ILE ALA SER VAL VAL PRO SEQRES 2 A 232 GLU LEU LEU PRO SER ALA GLU LEU TYR GLU ASP PRO PRO SEQRES 3 A 232 GLY LEU GLU PRO LEU PRO GLU GLU GLU PRO LEU ILE ALA SEQRES 4 A 232 LYS SER VAL ALA LYS ARG ARG ASN GLU PHE ILE THR VAL SEQRES 5 A 232 ARG TYR CYS ALA ARG GLN ALA LEU SER VAL LEU GLY ILE SEQRES 6 A 232 PRO GLU VAL PRO ILE LEU LYS GLY ASP LYS GLY GLN PRO SEQRES 7 A 232 LEU TRP PRO ASP GLY ILE VAL GLY SER MET THR HIS THR SEQRES 8 A 232 GLU GLY PHE ARG GLY ALA VAL VAL GLY ARG THR GLY GLU SEQRES 9 A 232 VAL ARG SER VAL GLY ILE ASP ALA GLU PRO HIS ASP VAL SEQRES 10 A 232 LEU PRO ASN GLY VAL LEU LYS SER ILE ALA LEU PRO VAL SEQRES 11 A 232 GLU ARG ASP GLU LEU ASP ALA LEU PRO ALA GLY THR HIS SEQRES 12 A 232 TRP ASP ARG LEU LEU PHE CYS ALA LYS GLU THR THR TYR SEQRES 13 A 232 LYS ALA TRP PHE PRO LEU THR ALA ARG TRP LEU GLY PHE SEQRES 14 A 232 GLU ASP ALA HIS ILE THR ILE ASP PRO ASP GLY THR PHE SEQRES 15 A 232 THR SER ARG ILE LEU VAL ASP GLY ARG ALA ASN ASP GLY SEQRES 16 A 232 THR VAL LEU SER ALA PHE ASP GLY ARG TRP ILE ILE ASP SEQRES 17 A 232 LYS GLY LEU ILE LEU THR ALA ILE VAL VAL PRO LYS LEU SEQRES 18 A 232 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 157 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 157 LEU VAL PRO ARG GLY SER HIS MET ALA ILE ARG ALA GLN SEQRES 3 B 157 LEU ASP ALA LEU ASP ALA ALA GLU ARG PRO GLY HIS LEU SEQRES 4 B 157 ALA SER ALA ILE ALA ASP GLU ILE ARG ALA VAL LEU ARG SEQRES 5 B 157 SER GLY ASP PRO ILE ASP HIS HIS ARG PRO LEU GLU THR SEQRES 6 B 157 LEU GLY LEU ASP ALA LEU MET GLY LEU GLU LEU ARG ASN SEQRES 7 B 157 ARG LEU GLU ALA SER LEU GLY ILE THR LEU PRO VAL ALA SEQRES 8 B 157 LEU VAL TRP ALA TYR PRO THR ILE SER ASP LEU ALA THR SEQRES 9 B 157 ALA LEU CYS GLU ARG MET ASP TYR ALA THR PRO ALA ALA SEQRES 10 B 157 ALA GLN GLU ILE SER ASP THR GLU PRO GLU LEU SER ASP SEQRES 11 B 157 GLU GLU MET ASP LEU LEU ALA ASP LEU VAL ASP ALA SER SEQRES 12 B 157 GLU LEU GLU ALA ALA THR ARG GLY GLU SER THR SER GLY SEQRES 13 B 157 SER HET COA A 301 27 HET FD7 A 302 19 HET MN A 303 1 HET MN A 304 1 HETNAM COA COENZYME A HETNAM FD7 N-(2,6-DIETHYLPHENYL)-N'-(N-ETHYLCARBAMIMIDOYL)UREA HETNAM MN MANGANESE (II) ION FORMUL 3 COA C21 H36 N7 O16 P3 S FORMUL 4 FD7 C14 H22 N4 O FORMUL 5 MN 2(MN 2+) FORMUL 7 HOH *8(H2 O) HELIX 1 AA1 LEU A 7 VAL A 11 5 5 HELIX 2 AA2 LEU A 31 GLU A 33 5 3 HELIX 3 AA3 GLU A 34 ALA A 39 1 6 HELIX 4 AA4 VAL A 42 LEU A 63 1 22 HELIX 5 AA5 GLY A 121 ALA A 127 1 7 HELIX 6 AA6 LEU A 128 LEU A 138 1 11 HELIX 7 AA7 HIS A 143 PHE A 160 1 18 HELIX 8 AA8 PRO A 161 THR A 163 5 3 HELIX 9 AA9 GLY A 168 GLU A 170 5 3 HELIX 10 AB1 GLY B 2072 ARG B 2087 1 16 HELIX 11 AB2 PRO B 2097 GLY B 2102 5 6 HELIX 12 AB3 ASP B 2104 GLY B 2120 1 17 HELIX 13 AB4 ALA B 2126 TYR B 2131 1 6 HELIX 14 AB5 THR B 2133 GLU B 2143 1 11 SHEET 1 AA1 3 SER A 18 LEU A 21 0 SHEET 2 AA1 3 PHE A 94 ARG A 101 -1 O ARG A 95 N LEU A 21 SHEET 3 AA1 3 ILE A 84 THR A 91 -1 N VAL A 85 O GLY A 100 SHEET 1 AA2 2 LEU A 71 LYS A 72 0 SHEET 2 AA2 2 PRO A 78 LEU A 79 -1 O LEU A 79 N LEU A 71 SHEET 1 AA3 5 VAL A 108 PRO A 114 0 SHEET 2 AA3 5 LEU A 211 VAL A 217 -1 O ILE A 212 N GLU A 113 SHEET 3 AA3 5 ALA A 200 ASP A 208 -1 N ARG A 204 O ALA A 215 SHEET 4 AA3 5 THR A 181 ILE A 186 -1 N PHE A 182 O GLY A 203 SHEET 5 AA3 5 ALA A 172 ASP A 177 -1 N HIS A 173 O ARG A 185 LINK O HIS A 90 MN MN A 304 1555 1555 2.05 LINK ND1 HIS A 90 MN MN A 304 1555 1555 2.05 LINK OD1 ASP A 111 MN MN A 303 1555 1555 2.41 LINK O2A COA A 301 MN MN A 303 1555 1555 1.96 LINK O1A COA A 301 MN MN A 304 1555 1555 2.18 LINK MN MN A 304 O HOH A 403 1555 1555 2.03 CRYST1 50.840 63.037 108.566 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009211 0.00000