HEADER VIRAL PROTEIN/IMMUNE SYSTEM 23-DEC-20 7BEK TITLE CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF SARS-COV-2 SPIKE TITLE 2 GLYCOPROTEIN IN COMPLEX WITH COVOX-158 FAB (CRYSTAL FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COVOX-158 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COVOX-158 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 11 CHAIN: E; COMPND 12 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 13 2; SOURCE 14 ORGANISM_COMMON: 2019-NCOV; SOURCE 15 ORGANISM_TAXID: 2697049; SOURCE 16 GENE: S, 2; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, ANTIBODY, GERMLINE, V-GENE, RECEPTOR-BINDING-DOMAIN, KEYWDS 2 SPIKE, NEUTRALISATION, PROTECTION, GLYCOSYLATION, VALENCY, VIRAL KEYWDS 3 PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN, IMMUNE SYSTEM, VIRAL PROTEIN- KEYWDS 4 IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,Y.ZHAO,J.REN,D.STUART REVDAT 6 13-NOV-24 7BEK 1 REMARK REVDAT 5 31-JAN-24 7BEK 1 REMARK REVDAT 4 29-NOV-23 7BEK 1 REMARK REVDAT 3 28-APR-21 7BEK 1 JRNL REVDAT 2 07-APR-21 7BEK 1 JRNL REVDAT 1 03-MAR-21 7BEK 0 JRNL AUTH W.DEJNIRATTISAI,D.ZHOU,H.M.GINN,H.M.E.DUYVESTEYN,P.SUPASA, JRNL AUTH 2 J.B.CASE,Y.ZHAO,T.S.WALTER,A.J.MENTZER,C.LIU,B.WANG, JRNL AUTH 3 G.C.PAESEN,J.SLON-CAMPOS,C.LOPEZ-CAMACHO,N.M.KAFAI, JRNL AUTH 4 A.L.BAILEY,R.E.CHEN,B.YING,C.THOMPSON,J.BOLTON,A.FYFE, JRNL AUTH 5 S.GUPTA,T.K.TAN,J.GILBERT-JARAMILLO,W.JAMES,M.KNIGHT, JRNL AUTH 6 M.W.CARROLL,D.SKELLY,C.DOLD,Y.PENG,R.LEVIN,T.DONG, JRNL AUTH 7 A.J.POLLARD,J.C.KNIGHT,P.KLENERMAN,N.TEMPERTON,D.R.HALL, JRNL AUTH 8 M.A.WILLIAMS,N.G.PATERSON,F.K.R.BERTRAM,C.A.SIEBERT, JRNL AUTH 9 D.K.CLARE,A.HOWE,J.RADECKE,Y.SONG,A.R.TOWNSEND,K.A.HUANG, JRNL AUTH10 E.E.FRY,J.MONGKOLSAPAYA,M.S.DIAMOND,J.REN,D.I.STUART, JRNL AUTH11 G.R.SCREATON JRNL TITL THE ANTIGENIC ANATOMY OF SARS-COV-2 RECEPTOR BINDING DOMAIN. JRNL REF CELL V. 184 2183 2021 JRNL REFN ISSN 1097-4172 JRNL PMID 33756110 JRNL DOI 10.1016/J.CELL.2021.02.032 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 57631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7100 - 5.6200 1.00 2789 134 0.1751 0.1960 REMARK 3 2 5.6200 - 4.4700 1.00 2623 204 0.1452 0.1530 REMARK 3 3 4.4700 - 3.9000 1.00 2669 129 0.1543 0.1571 REMARK 3 4 3.9000 - 3.5500 1.00 2628 127 0.1823 0.1926 REMARK 3 5 3.5400 - 3.2900 1.00 2620 150 0.1957 0.2303 REMARK 3 6 3.2900 - 3.1000 1.00 2658 111 0.2164 0.2634 REMARK 3 7 3.1000 - 2.9400 1.00 2634 100 0.2033 0.2468 REMARK 3 8 2.9400 - 2.8100 1.00 2644 115 0.2112 0.2472 REMARK 3 9 2.8100 - 2.7100 1.00 2616 118 0.2238 0.2765 REMARK 3 10 2.7100 - 2.6100 1.00 2616 142 0.2413 0.2875 REMARK 3 11 2.6100 - 2.5300 1.00 2604 136 0.2612 0.3161 REMARK 3 12 2.5300 - 2.4600 1.00 2596 122 0.2529 0.2708 REMARK 3 13 2.4600 - 2.3900 1.00 2574 164 0.2456 0.2658 REMARK 3 14 2.3900 - 2.3400 1.00 2552 167 0.2574 0.3152 REMARK 3 15 2.3400 - 2.2800 1.00 2599 139 0.2663 0.3161 REMARK 3 16 2.2800 - 2.2300 1.00 2583 132 0.2853 0.2884 REMARK 3 17 2.2300 - 2.1900 1.00 2573 141 0.3009 0.3292 REMARK 3 18 2.1900 - 2.1500 1.00 2607 124 0.3145 0.3898 REMARK 3 19 2.1500 - 2.1100 0.99 2525 157 0.3338 0.3658 REMARK 3 20 2.1100 - 2.0700 0.99 2554 148 0.3802 0.3862 REMARK 3 21 2.0700 - 2.0400 0.96 2469 138 0.4190 0.4523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.347 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5001 REMARK 3 ANGLE : 0.562 6785 REMARK 3 CHIRALITY : 0.043 758 REMARK 3 PLANARITY : 0.004 863 REMARK 3 DIHEDRAL : 12.735 1797 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9578 53.3126 -3.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.3371 T22: 0.4531 REMARK 3 T33: 0.4928 T12: -0.0501 REMARK 3 T13: 0.0493 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 1.6238 L22: 7.5552 REMARK 3 L33: 2.3925 L12: -0.9583 REMARK 3 L13: -1.9476 L23: 1.8832 REMARK 3 S TENSOR REMARK 3 S11: -0.2019 S12: -0.0007 S13: 0.3442 REMARK 3 S21: 0.0396 S22: 0.2762 S23: -1.3564 REMARK 3 S31: -0.2003 S32: 0.7137 S33: -0.0467 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3785 43.4210 -3.9895 REMARK 3 T TENSOR REMARK 3 T11: 0.2970 T22: 0.3691 REMARK 3 T33: 0.4402 T12: 0.0309 REMARK 3 T13: 0.0094 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 0.7214 L22: 7.4747 REMARK 3 L33: 3.4932 L12: -1.7526 REMARK 3 L13: -0.0172 L23: 1.3923 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: 0.0821 S13: -0.0313 REMARK 3 S21: 0.1964 S22: 0.1979 S23: -0.4744 REMARK 3 S31: 0.0955 S32: 0.2471 S33: -0.2241 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 114 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6403 72.7589 16.1697 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.3238 REMARK 3 T33: 0.2748 T12: -0.0007 REMARK 3 T13: -0.0128 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 3.5196 L22: 5.0056 REMARK 3 L33: 2.0295 L12: 0.0413 REMARK 3 L13: 1.3409 L23: 0.0832 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.5654 S13: 0.1814 REMARK 3 S21: 0.5612 S22: 0.0909 S23: 0.3144 REMARK 3 S31: -0.3683 S32: -0.0721 S33: 0.0484 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 139 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1454 69.2490 16.1243 REMARK 3 T TENSOR REMARK 3 T11: 0.4160 T22: 0.3540 REMARK 3 T33: 0.2692 T12: 0.0086 REMARK 3 T13: -0.0245 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 2.5359 L22: 2.6387 REMARK 3 L33: 5.3256 L12: 0.4205 REMARK 3 L13: 0.1513 L23: 1.5387 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.1870 S13: -0.0678 REMARK 3 S21: 0.4245 S22: -0.0607 S23: -0.0950 REMARK 3 S31: 0.3762 S32: 0.3010 S33: 0.0867 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 180 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4529 74.8090 21.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.2818 T22: 0.4034 REMARK 3 T33: 0.2838 T12: 0.0143 REMARK 3 T13: -0.0528 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 3.0546 L22: 3.6388 REMARK 3 L33: 9.5403 L12: 0.1770 REMARK 3 L13: 0.5733 L23: 2.3265 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: -0.2221 S13: 0.2756 REMARK 3 S21: 0.3672 S22: 0.0569 S23: -0.1111 REMARK 3 S31: 0.0396 S32: 0.5425 S33: -0.0331 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 208 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2244 81.8071 18.5799 REMARK 3 T TENSOR REMARK 3 T11: 0.5495 T22: 0.3693 REMARK 3 T33: 0.4271 T12: 0.0430 REMARK 3 T13: -0.1216 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.3386 L22: 6.9161 REMARK 3 L33: 7.9073 L12: 2.3781 REMARK 3 L13: 0.5124 L23: 2.7557 REMARK 3 S TENSOR REMARK 3 S11: 0.4415 S12: 0.0907 S13: 0.9606 REMARK 3 S21: 0.2449 S22: -0.2338 S23: 0.4886 REMARK 3 S31: -1.2935 S32: -0.2373 S33: -0.1271 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1361 35.0492 15.3167 REMARK 3 T TENSOR REMARK 3 T11: 0.9692 T22: 0.3940 REMARK 3 T33: 0.5709 T12: 0.1454 REMARK 3 T13: -0.0102 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 2.0433 L22: 4.4376 REMARK 3 L33: 7.7585 L12: 0.5152 REMARK 3 L13: -2.0221 L23: 3.4844 REMARK 3 S TENSOR REMARK 3 S11: -0.1895 S12: -0.2493 S13: -0.6228 REMARK 3 S21: 1.2541 S22: 0.0442 S23: -0.2992 REMARK 3 S31: 1.5723 S32: 0.1658 S33: 0.1769 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 102 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8084 62.5632 22.1884 REMARK 3 T TENSOR REMARK 3 T11: 0.4178 T22: 0.3703 REMARK 3 T33: 0.2526 T12: -0.0661 REMARK 3 T13: 0.0573 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.8855 L22: 3.8674 REMARK 3 L33: 2.2526 L12: -2.2872 REMARK 3 L13: 0.7313 L23: -0.0169 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.1143 S13: -0.2893 REMARK 3 S21: 0.3485 S22: -0.0773 S23: 0.1927 REMARK 3 S31: 0.3745 S32: -0.1082 S33: 0.0874 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 164 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7476 65.5489 23.7253 REMARK 3 T TENSOR REMARK 3 T11: 0.4412 T22: 0.3218 REMARK 3 T33: 0.2997 T12: -0.1059 REMARK 3 T13: 0.0459 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 5.0133 L22: 5.2298 REMARK 3 L33: 3.8445 L12: -3.4836 REMARK 3 L13: 1.8325 L23: -2.2268 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: -0.2104 S13: 0.0230 REMARK 3 S21: 0.4907 S22: -0.0296 S23: 0.2205 REMARK 3 S31: 0.0457 S32: -0.1391 S33: -0.0325 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 334 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1784 2.9291 -14.8319 REMARK 3 T TENSOR REMARK 3 T11: 0.5330 T22: 0.3607 REMARK 3 T33: 0.5289 T12: 0.0437 REMARK 3 T13: -0.0910 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 5.4792 L22: 9.6885 REMARK 3 L33: 6.0798 L12: 3.9970 REMARK 3 L13: -0.1127 L23: 4.1604 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: 0.2361 S13: -0.6886 REMARK 3 S21: 0.7631 S22: 0.2154 S23: 0.1130 REMARK 3 S31: 1.2894 S32: -0.0994 S33: -0.2974 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 365 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6903 8.8211 -21.9574 REMARK 3 T TENSOR REMARK 3 T11: 0.5952 T22: 0.9098 REMARK 3 T33: 0.8016 T12: -0.1224 REMARK 3 T13: -0.0877 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.1443 L22: 6.4005 REMARK 3 L33: 10.0031 L12: -0.9691 REMARK 3 L13: -2.1588 L23: 3.9508 REMARK 3 S TENSOR REMARK 3 S11: -0.2459 S12: 0.7752 S13: -0.2037 REMARK 3 S21: -0.2428 S22: -0.2893 S23: 1.5059 REMARK 3 S31: 1.0464 S32: -2.0585 S33: 0.4495 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 394 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3781 19.0659 -12.1011 REMARK 3 T TENSOR REMARK 3 T11: 0.2551 T22: 0.3456 REMARK 3 T33: 0.3605 T12: 0.0269 REMARK 3 T13: -0.0095 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 6.0412 L22: 7.0765 REMARK 3 L33: 3.8684 L12: 2.2704 REMARK 3 L13: 1.6393 L23: 0.9140 REMARK 3 S TENSOR REMARK 3 S11: 0.1771 S12: 0.0582 S13: 0.1110 REMARK 3 S21: 0.2000 S22: -0.0407 S23: 0.3860 REMARK 3 S31: -0.0017 S32: -0.1491 S33: -0.1767 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 422 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3917 16.1297 -6.8428 REMARK 3 T TENSOR REMARK 3 T11: 0.4425 T22: 0.3170 REMARK 3 T33: 0.3713 T12: 0.0751 REMARK 3 T13: -0.0301 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 6.4011 L22: 5.4664 REMARK 3 L33: 3.8106 L12: 1.6748 REMARK 3 L13: 0.5526 L23: 1.9513 REMARK 3 S TENSOR REMARK 3 S11: 0.1999 S12: -0.4774 S13: -0.2524 REMARK 3 S21: 0.8721 S22: -0.0884 S23: 0.0877 REMARK 3 S31: 0.6236 S32: 0.0311 S33: -0.0756 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 460 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4651 23.0056 -4.3065 REMARK 3 T TENSOR REMARK 3 T11: 0.4931 T22: 0.5221 REMARK 3 T33: 0.7451 T12: 0.1635 REMARK 3 T13: -0.1412 T23: -0.1821 REMARK 3 L TENSOR REMARK 3 L11: 2.9916 L22: 4.0296 REMARK 3 L33: 4.2358 L12: -0.2370 REMARK 3 L13: 2.5895 L23: 0.2920 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: -0.2027 S13: 0.2905 REMARK 3 S21: 0.6775 S22: 0.4622 S23: -1.3928 REMARK 3 S31: 0.3309 S32: 0.5649 S33: -0.4375 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 495 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8029 18.6121 3.8543 REMARK 3 T TENSOR REMARK 3 T11: 0.9583 T22: 0.6756 REMARK 3 T33: 0.6516 T12: -0.0233 REMARK 3 T13: 0.2413 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 7.9024 L22: 6.8857 REMARK 3 L33: 9.6003 L12: 0.2977 REMARK 3 L13: -5.1755 L23: 1.8153 REMARK 3 S TENSOR REMARK 3 S11: 1.0991 S12: -0.9441 S13: 1.2200 REMARK 3 S21: 1.9930 S22: -0.1397 S23: 0.7116 REMARK 3 S31: -0.3884 S32: -0.6270 S33: -1.0146 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 507 THROUGH 516 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9509 11.0925 -14.5125 REMARK 3 T TENSOR REMARK 3 T11: 0.4094 T22: 0.5372 REMARK 3 T33: 0.5050 T12: 0.0754 REMARK 3 T13: -0.0365 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 4.5910 L22: 5.0662 REMARK 3 L33: 7.4247 L12: -0.1190 REMARK 3 L13: -3.4391 L23: 1.7900 REMARK 3 S TENSOR REMARK 3 S11: 0.4663 S12: 0.5627 S13: -0.2406 REMARK 3 S21: 0.0007 S22: -0.1883 S23: 0.1225 REMARK 3 S31: 0.0152 S32: -0.2961 S33: -0.2089 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 517 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0010 3.1979 -32.5936 REMARK 3 T TENSOR REMARK 3 T11: 0.8147 T22: 1.0081 REMARK 3 T33: 0.7255 T12: -0.1549 REMARK 3 T13: -0.1666 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 3.6451 L22: 4.0068 REMARK 3 L33: 4.1733 L12: -1.3652 REMARK 3 L13: -3.8691 L23: 1.2412 REMARK 3 S TENSOR REMARK 3 S11: 0.0896 S12: 1.2177 S13: -0.4297 REMARK 3 S21: -0.6536 S22: 0.7065 S23: 0.4856 REMARK 3 S31: 1.0117 S32: -0.7727 S33: -0.8107 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57747 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 51.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7EBJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M (NH4)2SO4, 0.1 M TRIS PH 7.6 REMARK 280 AND 14.6% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.51000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.70500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.51000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.70500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.74500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.51000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.70500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.74500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.51000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.70500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 674 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 835 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP H 221 REMARK 465 LYS H 222 REMARK 465 GLU E 324 REMARK 465 THR E 325 REMARK 465 GLY E 326 REMARK 465 HIS E 327 REMARK 465 HIS E 328 REMARK 465 HIS E 329 REMARK 465 HIS E 330 REMARK 465 HIS E 331 REMARK 465 HIS E 332 REMARK 465 THR E 333 REMARK 465 LYS E 528 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 527 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 670 O HOH L 672 1.91 REMARK 500 O HOH H 693 O HOH L 639 1.93 REMARK 500 O HOH L 668 O HOH L 677 2.00 REMARK 500 O HOH H 634 O HOH H 726 2.00 REMARK 500 O HOH H 721 O HOH H 723 2.03 REMARK 500 O HOH H 728 O HOH H 740 2.05 REMARK 500 O HOH H 622 O HOH H 731 2.10 REMARK 500 OH TYR E 396 O HOH E 801 2.13 REMARK 500 O HOH H 689 O HOH L 606 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 148 65.95 67.31 REMARK 500 SER L 30 -114.10 51.78 REMARK 500 ALA L 51 -20.91 70.43 REMARK 500 SER L 52 39.42 -154.94 REMARK 500 ASN L 138 71.99 52.78 REMARK 500 ALA E 352 50.91 -109.90 REMARK 500 PHE E 377 81.97 -150.68 REMARK 500 ASN E 422 -57.78 -128.36 REMARK 500 ASN E 487 19.42 59.11 REMARK 500 HIS E 519 47.92 -83.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7EBI RELATED DB: PDB REMARK 900 RELATED ID: 7EBJ RELATED DB: PDB REMARK 900 RELATED ID: 7EBH RELATED DB: PDB DBREF 7BEK H 1 222 PDB 7BEK 7BEK 1 222 DBREF 7BEK L 1 214 PDB 7BEK 7BEK 1 214 DBREF 7BEK E 333 528 UNP P0DTC2 SPIKE_SARS2 333 528 SEQADV 7BEK GLU E 324 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEK THR E 325 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEK GLY E 326 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEK HIS E 327 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEK HIS E 328 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEK HIS E 329 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEK HIS E 330 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEK HIS E 331 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEK HIS E 332 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEK LYS E 527 UNP P0DTC2 PRO 527 ENGINEERED MUTATION SEQRES 1 H 222 GLU VAL GLN LEU LEU GLU SER GLY GLY ASP LEU ILE GLN SEQRES 2 H 222 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 222 VAL THR VAL SER SER ASN TYR MET SER TRP VAL ARG GLN SEQRES 4 H 222 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ILE ILE TYR SEQRES 5 H 222 PRO GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 222 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 H 222 TYR LEU GLN MET HIS SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 222 VAL TYR TYR CYS ALA ARG ASP LEU GLY SER GLY ASP MET SEQRES 9 H 222 ASP VAL TRP GLY LYS GLY THR THR VAL THR VAL SER SER SEQRES 10 H 222 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 222 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 222 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 222 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 222 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 222 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 222 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 222 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP SEQRES 18 H 222 LYS SEQRES 1 L 214 ASP ILE VAL MET THR GLN SER PRO SER PHE LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN GLY ILE SER SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE GLN ALA ALA SER SEQRES 5 L 214 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN LEU SEQRES 8 L 214 ASN SER TYR ARG TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 E 205 GLU THR GLY HIS HIS HIS HIS HIS HIS THR ASN LEU CYS SEQRES 2 E 205 PRO PHE GLY GLU VAL PHE ASN ALA THR ARG PHE ALA SER SEQRES 3 E 205 VAL TYR ALA TRP ASN ARG LYS ARG ILE SER ASN CYS VAL SEQRES 4 E 205 ALA ASP TYR SER VAL LEU TYR ASN SER ALA SER PHE SER SEQRES 5 E 205 THR PHE LYS CYS TYR GLY VAL SER PRO THR LYS LEU ASN SEQRES 6 E 205 ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SER PHE VAL SEQRES 7 E 205 ILE ARG GLY ASP GLU VAL ARG GLN ILE ALA PRO GLY GLN SEQRES 8 E 205 THR GLY LYS ILE ALA ASP TYR ASN TYR LYS LEU PRO ASP SEQRES 9 E 205 ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SER ASN ASN SEQRES 10 E 205 LEU ASP SER LYS VAL GLY GLY ASN TYR ASN TYR LEU TYR SEQRES 11 E 205 ARG LEU PHE ARG LYS SER ASN LEU LYS PRO PHE GLU ARG SEQRES 12 E 205 ASP ILE SER THR GLU ILE TYR GLN ALA GLY SER THR PRO SEQRES 13 E 205 CYS ASN GLY VAL GLU GLY PHE ASN CYS TYR PHE PRO LEU SEQRES 14 E 205 GLN SER TYR GLY PHE GLN PRO THR ASN GLY VAL GLY TYR SEQRES 15 E 205 GLN PRO TYR ARG VAL VAL VAL LEU SER PHE GLU LEU LEU SEQRES 16 E 205 HIS ALA PRO ALA THR VAL CYS GLY LYS LYS HET NAG A 1 14 HET NAG A 2 14 HET FUC A 3 10 HET PEG H 501 7 HET GOL H 502 6 HET SO4 H 503 5 HET CL H 504 1 HET CL H 505 1 HET CL H 506 1 HET PEG L 501 7 HET GOL L 502 6 HET SO4 L 503 5 HET CL L 504 1 HET CL L 505 1 HET TRS E 701 8 HET GOL E 702 6 HET PEG E 703 7 HET CL E 704 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 FORMUL 5 PEG 3(C4 H10 O3) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 7 SO4 2(O4 S 2-) FORMUL 8 CL 6(CL 1-) FORMUL 16 TRS C4 H12 N O3 1+ FORMUL 20 HOH *278(H2 O) HELIX 1 AA1 THR H 28 ASN H 32 5 5 HELIX 2 AA2 ARG H 86 THR H 90 5 5 HELIX 3 AA3 SER H 160 ALA H 162 5 3 HELIX 4 AA4 SER H 191 THR H 195 5 5 HELIX 5 AA5 LYS H 205 ASN H 208 5 4 HELIX 6 AA6 GLN L 79 PHE L 83 5 5 HELIX 7 AA7 SER L 121 SER L 127 1 7 HELIX 8 AA8 LYS L 183 GLU L 187 1 5 HELIX 9 AA9 PRO E 337 ASN E 343 1 7 HELIX 10 AB1 SER E 349 TRP E 353 5 5 HELIX 11 AB2 TYR E 365 ASN E 370 1 6 HELIX 12 AB3 PRO E 384 LEU E 390 5 7 HELIX 13 AB4 ASP E 405 ILE E 410 5 6 HELIX 14 AB5 GLY E 416 ASN E 422 1 7 HELIX 15 AB6 SER E 438 SER E 443 1 6 HELIX 16 AB7 GLY E 502 TYR E 505 5 4 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N LEU H 5 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 LEU H 11 ILE H 12 0 SHEET 2 AA2 6 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AA2 6 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O PHE H 58 N ILE H 50 SHEET 1 AA3 4 LEU H 11 ILE H 12 0 SHEET 2 AA3 4 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AA3 4 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA3 4 MET H 104 TRP H 107 -1 O VAL H 106 N ARG H 97 SHEET 1 AA4 4 SER H 124 LEU H 128 0 SHEET 2 AA4 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AA4 4 TYR H 180 PRO H 189 -1 O VAL H 188 N ALA H 140 SHEET 4 AA4 4 VAL H 167 THR H 169 -1 N HIS H 168 O VAL H 185 SHEET 1 AA5 4 SER H 124 LEU H 128 0 SHEET 2 AA5 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AA5 4 TYR H 180 PRO H 189 -1 O VAL H 188 N ALA H 140 SHEET 4 AA5 4 VAL H 173 LEU H 174 -1 N VAL H 173 O SER H 181 SHEET 1 AA6 3 THR H 155 TRP H 158 0 SHEET 2 AA6 3 TYR H 198 HIS H 204 -1 O ASN H 201 N SER H 157 SHEET 3 AA6 3 THR H 209 VAL H 215 -1 O VAL H 211 N VAL H 202 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 PHE L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 GLN L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 THR L 53 LEU L 54 -1 O THR L 53 N GLN L 49 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB1 4 ALA L 153 GLN L 155 0 SHEET 2 AB1 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 AB1 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AB2 5 ASN E 354 ILE E 358 0 SHEET 2 AB2 5 ASN E 394 ARG E 403 -1 O VAL E 395 N ILE E 358 SHEET 3 AB2 5 PRO E 507 GLU E 516 -1 O VAL E 512 N ASP E 398 SHEET 4 AB2 5 GLY E 431 ASN E 437 -1 N ILE E 434 O VAL E 511 SHEET 5 AB2 5 THR E 376 TYR E 380 -1 N TYR E 380 O GLY E 431 SHEET 1 AB3 2 CYS E 361 VAL E 362 0 SHEET 2 AB3 2 VAL E 524 CYS E 525 1 O CYS E 525 N CYS E 361 SHEET 1 AB4 2 LEU E 452 ARG E 454 0 SHEET 2 AB4 2 LEU E 492 SER E 494 -1 O GLN E 493 N TYR E 453 SHEET 1 AB5 2 TYR E 473 GLN E 474 0 SHEET 2 AB5 2 CYS E 488 TYR E 489 -1 O TYR E 489 N TYR E 473 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.03 SSBOND 2 CYS H 144 CYS H 200 1555 1555 2.03 SSBOND 3 CYS H 220 CYS L 214 1555 1555 2.04 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 6 CYS E 336 CYS E 361 1555 1555 2.03 SSBOND 7 CYS E 379 CYS E 432 1555 1555 2.04 SSBOND 8 CYS E 391 CYS E 525 1555 1555 2.03 SSBOND 9 CYS E 480 CYS E 488 1555 1555 2.03 LINK ND2 ASN E 343 C1 NAG A 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.45 LINK O6 NAG A 1 C1 FUC A 3 1555 1555 1.44 CISPEP 1 PHE H 150 PRO H 151 0 -4.82 CISPEP 2 GLU H 152 PRO H 153 0 -1.70 CISPEP 3 SER L 7 PRO L 8 0 -5.05 CISPEP 4 TYR L 140 PRO L 141 0 0.88 CRYST1 83.020 149.410 145.490 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012045 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006873 0.00000