HEADER VIRAL PROTEIN/IMMUNE SYSTEM 24-DEC-20 7BEM TITLE CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF SARS-COV-2 SPIKE TITLE 2 GLYCOPROTEIN IN COMPLEX WITH COVOX-269 SCFV COMPND MOL_ID: 1; COMPND 2 MOLECULE: COVOX-269 VH DOMAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COVOX-269 VL DOMAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 11 CHAIN: E; COMPND 12 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 13 2; SOURCE 14 ORGANISM_COMMON: 2019-NCOV; SOURCE 15 ORGANISM_TAXID: 2697049; SOURCE 16 GENE: S, 2; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, ANTIBODY, GERMLINE, V-GENE, RECEPTOR-BINDING-DOMAIN, KEYWDS 2 SPIKE, NEUTRALISATION, PROTECTION, GLYCOSYLATION, VALENCY, VIRAL KEYWDS 3 PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN, IMMUNE SYSTEM, VIRAL PROTEIN- KEYWDS 4 IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,Y.ZHAO,J.REN,D.STUART REVDAT 5 20-NOV-24 7BEM 1 REMARK REVDAT 4 31-JAN-24 7BEM 1 REMARK REVDAT 3 28-APR-21 7BEM 1 JRNL REVDAT 2 07-APR-21 7BEM 1 JRNL REVDAT 1 03-MAR-21 7BEM 0 JRNL AUTH W.DEJNIRATTISAI,D.ZHOU,H.M.GINN,H.M.E.DUYVESTEYN,P.SUPASA, JRNL AUTH 2 J.B.CASE,Y.ZHAO,T.S.WALTER,A.J.MENTZER,C.LIU,B.WANG, JRNL AUTH 3 G.C.PAESEN,J.SLON-CAMPOS,C.LOPEZ-CAMACHO,N.M.KAFAI, JRNL AUTH 4 A.L.BAILEY,R.E.CHEN,B.YING,C.THOMPSON,J.BOLTON,A.FYFE, JRNL AUTH 5 S.GUPTA,T.K.TAN,J.GILBERT-JARAMILLO,W.JAMES,M.KNIGHT, JRNL AUTH 6 M.W.CARROLL,D.SKELLY,C.DOLD,Y.PENG,R.LEVIN,T.DONG, JRNL AUTH 7 A.J.POLLARD,J.C.KNIGHT,P.KLENERMAN,N.TEMPERTON,D.R.HALL, JRNL AUTH 8 M.A.WILLIAMS,N.G.PATERSON,F.K.R.BERTRAM,C.A.SIEBERT, JRNL AUTH 9 D.K.CLARE,A.HOWE,J.RADECKE,Y.SONG,A.R.TOWNSEND,K.A.HUANG, JRNL AUTH10 E.E.FRY,J.MONGKOLSAPAYA,M.S.DIAMOND,J.REN,D.I.STUART, JRNL AUTH11 G.R.SCREATON JRNL TITL THE ANTIGENIC ANATOMY OF SARS-COV-2 RECEPTOR BINDING DOMAIN. JRNL REF CELL V. 184 2183 2021 JRNL REFN ISSN 1097-4172 JRNL PMID 33756110 JRNL DOI 10.1016/J.CELL.2021.02.032 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.1_3865 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 35665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0500 - 5.9100 1.00 2908 161 0.1893 0.1990 REMARK 3 2 5.9100 - 4.7000 1.00 2736 149 0.1548 0.1677 REMARK 3 3 4.7000 - 4.1000 1.00 2720 150 0.1441 0.1877 REMARK 3 4 4.1000 - 3.7300 1.00 2709 117 0.1795 0.2386 REMARK 3 5 3.7300 - 3.4600 1.00 2663 138 0.2233 0.2502 REMARK 3 6 3.4600 - 3.2600 1.00 2665 153 0.2412 0.3031 REMARK 3 7 3.2600 - 3.0900 0.99 2649 130 0.2855 0.3317 REMARK 3 8 3.0900 - 2.9600 0.99 2643 139 0.3410 0.3691 REMARK 3 9 2.9600 - 2.8400 0.99 2615 149 0.3596 0.4592 REMARK 3 10 2.8400 - 2.7500 0.99 2610 128 0.3626 0.3754 REMARK 3 11 2.7500 - 2.6600 0.99 2637 138 0.3963 0.4135 REMARK 3 12 2.6600 - 2.5800 0.92 2456 103 0.4217 0.4252 REMARK 3 13 2.5800 - 2.5200 0.73 1901 98 0.4306 0.4326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.534 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3363 REMARK 3 ANGLE : 0.642 4561 REMARK 3 CHIRALITY : 0.044 497 REMARK 3 PLANARITY : 0.004 583 REMARK 3 DIHEDRAL : 15.343 1203 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 25 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.6937 -45.5706 -8.9079 REMARK 3 T TENSOR REMARK 3 T11: 0.6936 T22: 0.8559 REMARK 3 T33: 0.6863 T12: -0.0434 REMARK 3 T13: 0.0200 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 5.8530 L22: 8.1558 REMARK 3 L33: 3.8392 L12: 2.8284 REMARK 3 L13: 4.6562 L23: 1.3041 REMARK 3 S TENSOR REMARK 3 S11: -1.4046 S12: -1.1807 S13: 0.7756 REMARK 3 S21: 1.1511 S22: 1.0859 S23: 0.3873 REMARK 3 S31: -0.2700 S32: 0.5292 S33: 0.4391 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 8 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.1212 -50.8841 -7.7875 REMARK 3 T TENSOR REMARK 3 T11: 0.9708 T22: 1.1197 REMARK 3 T33: 0.6471 T12: -0.0530 REMARK 3 T13: -0.1277 T23: -0.1046 REMARK 3 L TENSOR REMARK 3 L11: 1.8236 L22: 5.0483 REMARK 3 L33: 5.6431 L12: -0.6672 REMARK 3 L13: -3.1650 L23: 1.0377 REMARK 3 S TENSOR REMARK 3 S11: 0.5349 S12: -0.3452 S13: -0.2322 REMARK 3 S21: 0.5488 S22: -0.5025 S23: -0.5340 REMARK 3 S31: -0.4232 S32: 0.2141 S33: 0.0022 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.2727 -51.7327 -2.7481 REMARK 3 T TENSOR REMARK 3 T11: 0.8151 T22: 0.8320 REMARK 3 T33: 0.5734 T12: -0.0601 REMARK 3 T13: -0.0960 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 8.6636 L22: 2.5773 REMARK 3 L33: 6.9007 L12: 1.5197 REMARK 3 L13: 0.9957 L23: 2.6503 REMARK 3 S TENSOR REMARK 3 S11: 0.6724 S12: -0.7335 S13: 0.0447 REMARK 3 S21: 0.3921 S22: -0.6651 S23: -0.1327 REMARK 3 S31: -0.2872 S32: -0.1032 S33: 0.1135 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 33 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.2154 -57.7069 -10.8366 REMARK 3 T TENSOR REMARK 3 T11: 0.6290 T22: 0.8088 REMARK 3 T33: 0.4988 T12: -0.1549 REMARK 3 T13: -0.0419 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 4.8463 L22: 0.8679 REMARK 3 L33: 0.3641 L12: 0.0226 REMARK 3 L13: -1.0498 L23: -0.3665 REMARK 3 S TENSOR REMARK 3 S11: -0.5022 S12: -0.8029 S13: -0.4807 REMARK 3 S21: -0.2821 S22: -0.1142 S23: -0.2232 REMARK 3 S31: 1.0762 S32: -0.1460 S33: 0.0577 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 40 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.4593 -59.7825 -15.0023 REMARK 3 T TENSOR REMARK 3 T11: 0.7541 T22: 0.7951 REMARK 3 T33: 0.4487 T12: -0.0039 REMARK 3 T13: -0.0513 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.0206 L22: 4.0215 REMARK 3 L33: 2.8702 L12: 1.0700 REMARK 3 L13: -0.8316 L23: -2.8348 REMARK 3 S TENSOR REMARK 3 S11: -0.2709 S12: 1.0577 S13: -0.3336 REMARK 3 S21: -1.0625 S22: -0.2164 S23: 0.1645 REMARK 3 S31: -0.5306 S32: -0.6238 S33: 0.2888 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 52 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.4395 -65.4501 -4.4091 REMARK 3 T TENSOR REMARK 3 T11: 0.7473 T22: 0.9153 REMARK 3 T33: 0.6256 T12: -0.1240 REMARK 3 T13: -0.0808 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 4.1622 L22: 3.6289 REMARK 3 L33: 2.9523 L12: -0.3510 REMARK 3 L13: -1.3545 L23: -0.6329 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: 0.0005 S13: -0.5471 REMARK 3 S21: -0.5823 S22: -0.1726 S23: 0.6080 REMARK 3 S31: 0.8294 S32: -0.6231 S33: 0.0961 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 64 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.8287 -59.6391 -1.9187 REMARK 3 T TENSOR REMARK 3 T11: 0.7138 T22: 0.8607 REMARK 3 T33: 0.6840 T12: 0.0774 REMARK 3 T13: -0.1038 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 4.5729 L22: 2.3367 REMARK 3 L33: 1.4409 L12: -0.5536 REMARK 3 L13: -0.5527 L23: -1.0977 REMARK 3 S TENSOR REMARK 3 S11: -0.2055 S12: -0.4879 S13: 0.0154 REMARK 3 S21: -0.7657 S22: 0.1828 S23: 0.4035 REMARK 3 S31: 0.1145 S32: 0.2456 S33: 0.2636 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 73 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.2761 -52.1012 0.0286 REMARK 3 T TENSOR REMARK 3 T11: 0.9471 T22: 0.9589 REMARK 3 T33: 0.5937 T12: -0.1119 REMARK 3 T13: 0.1102 T23: -0.0643 REMARK 3 L TENSOR REMARK 3 L11: 7.7361 L22: 5.2376 REMARK 3 L33: 2.4491 L12: -4.3338 REMARK 3 L13: -1.1792 L23: 1.1225 REMARK 3 S TENSOR REMARK 3 S11: 0.3706 S12: -0.9508 S13: 0.3329 REMARK 3 S21: 0.5913 S22: -0.3474 S23: -0.0308 REMARK 3 S31: -0.1461 S32: -0.2728 S33: 0.1096 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 83 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.1890 -58.4243 -10.8231 REMARK 3 T TENSOR REMARK 3 T11: 0.8935 T22: 0.9908 REMARK 3 T33: 0.6461 T12: -0.1333 REMARK 3 T13: 0.0165 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.8788 L22: 2.7336 REMARK 3 L33: 7.6238 L12: 2.2984 REMARK 3 L13: -1.2689 L23: -2.1755 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: 0.3160 S13: -1.8873 REMARK 3 S21: -0.5345 S22: 0.5409 S23: -0.4122 REMARK 3 S31: 0.5580 S32: 0.6712 S33: 0.3834 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 91 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.8862 -54.1904 -12.4379 REMARK 3 T TENSOR REMARK 3 T11: 0.7329 T22: 0.8104 REMARK 3 T33: 0.6025 T12: -0.1029 REMARK 3 T13: -0.0612 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 3.0333 L22: 1.9555 REMARK 3 L33: 4.3267 L12: 1.4861 REMARK 3 L13: -3.1609 L23: -0.2683 REMARK 3 S TENSOR REMARK 3 S11: -0.3218 S12: 0.7815 S13: 0.8580 REMARK 3 S21: 0.0522 S22: 0.1230 S23: 0.2325 REMARK 3 S31: -0.1394 S32: -0.0499 S33: 0.2526 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 99 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.3907 -58.8580 -13.8926 REMARK 3 T TENSOR REMARK 3 T11: 0.6664 T22: 0.7680 REMARK 3 T33: 0.5653 T12: -0.0674 REMARK 3 T13: -0.0212 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 8.2071 L22: 8.2183 REMARK 3 L33: 4.9014 L12: 7.6080 REMARK 3 L13: -1.2868 L23: 0.1677 REMARK 3 S TENSOR REMARK 3 S11: -0.4156 S12: 0.2759 S13: 0.4428 REMARK 3 S21: 0.1370 S22: 0.2560 S23: -0.2774 REMARK 3 S31: 0.5294 S32: -0.6181 S33: 0.2342 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 108 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.3887 -49.1697 -13.8194 REMARK 3 T TENSOR REMARK 3 T11: 0.7976 T22: 0.9839 REMARK 3 T33: 0.5263 T12: 0.0207 REMARK 3 T13: 0.0004 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 9.2128 L22: 4.6524 REMARK 3 L33: 3.3528 L12: 3.1407 REMARK 3 L13: 0.4597 L23: -0.7215 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: -0.6107 S13: -0.0038 REMARK 3 S21: -0.5531 S22: -0.1973 S23: 0.1369 REMARK 3 S31: -0.4296 S32: 0.3601 S33: 0.2211 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 0 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.0447 -71.2942 -25.1587 REMARK 3 T TENSOR REMARK 3 T11: 1.2210 T22: 1.0307 REMARK 3 T33: 0.7104 T12: 0.0707 REMARK 3 T13: 0.0246 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 1.3733 L22: 5.1492 REMARK 3 L33: 5.3439 L12: -1.2519 REMARK 3 L13: 1.2170 L23: -5.2375 REMARK 3 S TENSOR REMARK 3 S11: -0.3877 S12: 0.0795 S13: -1.1421 REMARK 3 S21: 0.2186 S22: -0.4869 S23: -0.9975 REMARK 3 S31: 1.1483 S32: 1.1972 S33: 0.6140 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 8 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8337 -60.2000 -28.3927 REMARK 3 T TENSOR REMARK 3 T11: 0.8103 T22: 0.7925 REMARK 3 T33: 0.4968 T12: -0.0192 REMARK 3 T13: -0.0963 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 3.1801 L22: 2.5758 REMARK 3 L33: 3.6806 L12: 0.4024 REMARK 3 L13: -0.7433 L23: -1.5089 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: 0.3345 S13: 0.1471 REMARK 3 S21: -0.8011 S22: -0.1019 S23: 0.2579 REMARK 3 S31: 0.1664 S32: 0.0533 S33: 0.1064 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.3392 -48.8529 -34.8496 REMARK 3 T TENSOR REMARK 3 T11: 0.9426 T22: 0.9217 REMARK 3 T33: 0.8714 T12: 0.0035 REMARK 3 T13: -0.1385 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 4.3027 L22: 5.5508 REMARK 3 L33: 0.4202 L12: 4.8033 REMARK 3 L13: 0.4096 L23: 0.5425 REMARK 3 S TENSOR REMARK 3 S11: -0.1298 S12: 0.2829 S13: 1.4017 REMARK 3 S21: -0.0439 S22: -0.7199 S23: 0.9919 REMARK 3 S31: -0.9360 S32: -0.3808 S33: -0.4080 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 85 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.1963 -64.8651 -20.5669 REMARK 3 T TENSOR REMARK 3 T11: 0.6676 T22: 0.8349 REMARK 3 T33: 0.6377 T12: -0.0890 REMARK 3 T13: -0.0349 T23: 0.0688 REMARK 3 L TENSOR REMARK 3 L11: 6.8919 L22: 7.3390 REMARK 3 L33: 3.2453 L12: 1.9039 REMARK 3 L13: 0.1308 L23: 4.5180 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: -0.1597 S13: -0.5579 REMARK 3 S21: 0.0113 S22: -0.1784 S23: -0.1071 REMARK 3 S31: 0.3176 S32: 0.3110 S33: 0.1395 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 104 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.3809 -51.0107 -38.3752 REMARK 3 T TENSOR REMARK 3 T11: 1.2730 T22: 0.8618 REMARK 3 T33: 0.6860 T12: -0.1688 REMARK 3 T13: 0.0846 T23: 0.1277 REMARK 3 L TENSOR REMARK 3 L11: 2.1417 L22: 2.9035 REMARK 3 L33: 2.8421 L12: 1.4512 REMARK 3 L13: -1.3244 L23: 1.0625 REMARK 3 S TENSOR REMARK 3 S11: 0.1250 S12: -0.1172 S13: 0.5465 REMARK 3 S21: -0.0620 S22: -0.8696 S23: -0.6547 REMARK 3 S31: -2.6379 S32: 2.7910 S33: 0.8297 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 334 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9378 -93.0112 0.6182 REMARK 3 T TENSOR REMARK 3 T11: 0.8438 T22: 0.9857 REMARK 3 T33: 0.8109 T12: -0.1559 REMARK 3 T13: -0.0156 T23: 0.1279 REMARK 3 L TENSOR REMARK 3 L11: 4.2958 L22: 9.1405 REMARK 3 L33: 6.4381 L12: -3.0546 REMARK 3 L13: 1.2719 L23: -1.8598 REMARK 3 S TENSOR REMARK 3 S11: 0.3232 S12: -0.3431 S13: -0.4816 REMARK 3 S21: 0.4068 S22: -0.3363 S23: -0.5884 REMARK 3 S31: 0.6112 S32: 0.0024 S33: -0.0659 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 381 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.9267 -97.8047 10.2061 REMARK 3 T TENSOR REMARK 3 T11: 1.1863 T22: 1.4079 REMARK 3 T33: 1.2129 T12: 0.0192 REMARK 3 T13: -0.0462 T23: 0.4901 REMARK 3 L TENSOR REMARK 3 L11: 8.7620 L22: 6.4256 REMARK 3 L33: 8.1628 L12: -3.0464 REMARK 3 L13: 8.3937 L23: -2.2243 REMARK 3 S TENSOR REMARK 3 S11: 0.1165 S12: 0.6078 S13: -1.0912 REMARK 3 S21: 1.6042 S22: 0.4106 S23: 0.8681 REMARK 3 S31: -0.0544 S32: -0.2190 S33: -0.4401 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 395 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.2989 -81.6773 -1.9321 REMARK 3 T TENSOR REMARK 3 T11: 0.7299 T22: 0.9133 REMARK 3 T33: 0.5910 T12: -0.1067 REMARK 3 T13: -0.0092 T23: 0.0878 REMARK 3 L TENSOR REMARK 3 L11: 4.2231 L22: 6.5874 REMARK 3 L33: 4.5016 L12: 1.6143 REMARK 3 L13: 1.1362 L23: 1.6557 REMARK 3 S TENSOR REMARK 3 S11: 0.3209 S12: -0.5735 S13: -0.2472 REMARK 3 S21: 0.6868 S22: -0.2134 S23: -0.1508 REMARK 3 S31: 0.3050 S32: -0.0141 S33: -0.1579 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 443 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.5189 -73.3309 -3.7741 REMARK 3 T TENSOR REMARK 3 T11: 0.7817 T22: 0.8941 REMARK 3 T33: 0.6181 T12: -0.0253 REMARK 3 T13: -0.0914 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 2.4115 L22: 3.6553 REMARK 3 L33: 4.6378 L12: 0.2123 REMARK 3 L13: -0.4921 L23: 3.4140 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: -0.4423 S13: -0.1571 REMARK 3 S21: 0.2146 S22: -0.7046 S23: 0.9186 REMARK 3 S31: -0.0707 S32: -0.3196 S33: 0.6997 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 470 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9005 -58.5673 -4.9181 REMARK 3 T TENSOR REMARK 3 T11: 0.8376 T22: 1.0886 REMARK 3 T33: 0.6619 T12: -0.0232 REMARK 3 T13: 0.0043 T23: -0.1053 REMARK 3 L TENSOR REMARK 3 L11: 2.2292 L22: 9.8421 REMARK 3 L33: 1.0107 L12: -1.2780 REMARK 3 L13: 1.5360 L23: -0.7229 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: -0.0543 S13: 0.1440 REMARK 3 S21: 0.1979 S22: -0.4019 S23: 0.7211 REMARK 3 S31: -0.3874 S32: -0.5320 S33: 0.3488 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 495 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4340 -79.4440 -18.0948 REMARK 3 T TENSOR REMARK 3 T11: 0.8562 T22: 0.8102 REMARK 3 T33: 0.8034 T12: -0.0670 REMARK 3 T13: -0.1234 T23: -0.0938 REMARK 3 L TENSOR REMARK 3 L11: 2.7413 L22: 6.4955 REMARK 3 L33: 1.7393 L12: 3.4415 REMARK 3 L13: 0.8821 L23: 2.9091 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.0645 S13: 0.4986 REMARK 3 S21: -0.4012 S22: -0.1240 S23: -0.5387 REMARK 3 S31: -0.3530 S32: 0.0214 S33: 0.1463 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 507 THROUGH 519 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.9768 -89.0940 3.8135 REMARK 3 T TENSOR REMARK 3 T11: 0.9669 T22: 1.0947 REMARK 3 T33: 0.8079 T12: -0.0348 REMARK 3 T13: -0.0779 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 7.6678 L22: 3.2250 REMARK 3 L33: 3.9685 L12: -3.4338 REMARK 3 L13: 4.1993 L23: -3.5044 REMARK 3 S TENSOR REMARK 3 S11: -0.7881 S12: -1.9831 S13: 0.1595 REMARK 3 S21: 1.3829 S22: 0.1098 S23: -0.1815 REMARK 3 S31: -0.4386 S32: 0.1714 S33: 0.5476 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1301 THROUGH 1601 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.4344 -76.3738 -6.3777 REMARK 3 T TENSOR REMARK 3 T11: 1.7477 T22: 1.5716 REMARK 3 T33: 1.9655 T12: 0.1390 REMARK 3 T13: 0.0396 T23: -0.0668 REMARK 3 L TENSOR REMARK 3 L11: 0.4108 L22: 0.2616 REMARK 3 L33: -0.0587 L12: 0.3596 REMARK 3 L13: 0.0958 L23: 0.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.7741 S12: 0.9304 S13: -0.3413 REMARK 3 S21: 1.0540 S22: 0.4708 S23: -0.7644 REMARK 3 S31: -0.2247 S32: 0.0102 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292113177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 57.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 73.40 REMARK 200 R MERGE (I) : 0.43200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M PROLINE, 0.1 M HEPES PH 7.5 AND REMARK 280 10% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.42800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.21400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.42800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.21400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.42800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 40.21400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.42800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.21400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA H 118 REMARK 465 SER H 119 REMARK 465 THR H 120 REMARK 465 GLY H 121 REMARK 465 GLY H 122 REMARK 465 SER H 123 REMARK 465 GLY H 124 REMARK 465 GLY H 125 REMARK 465 GLY H 126 REMARK 465 GLY H 127 REMARK 465 SER H 128 REMARK 465 GLY H 129 REMARK 465 GLY H 130 REMARK 465 GLY H 131 REMARK 465 GLY H 132 REMARK 465 SER H 133 REMARK 465 GLY H 134 REMARK 465 GLY H 135 REMARK 465 GLY L -2 REMARK 465 ALA L -1 REMARK 465 ALA L 110 REMARK 465 ALA L 111 REMARK 465 LEU L 112 REMARK 465 VAL L 113 REMARK 465 PRO L 114 REMARK 465 ARG L 115 REMARK 465 GLY L 116 REMARK 465 SER L 117 REMARK 465 SER L 118 REMARK 465 ALA L 119 REMARK 465 TRP L 120 REMARK 465 SER L 121 REMARK 465 HIS L 122 REMARK 465 PRO L 123 REMARK 465 GLN L 124 REMARK 465 PHE L 125 REMARK 465 GLU L 126 REMARK 465 LYS L 127 REMARK 465 GLY L 128 REMARK 465 GLY L 129 REMARK 465 SER L 130 REMARK 465 GLY L 131 REMARK 465 GLY L 132 REMARK 465 GLY L 133 REMARK 465 SER L 134 REMARK 465 GLY L 135 REMARK 465 GLY L 136 REMARK 465 SER L 137 REMARK 465 ALA L 138 REMARK 465 TRP L 139 REMARK 465 SER L 140 REMARK 465 HIS L 141 REMARK 465 PRO L 142 REMARK 465 GLN L 143 REMARK 465 PHE L 144 REMARK 465 GLU L 145 REMARK 465 LYS L 146 REMARK 465 GLU E 324 REMARK 465 THR E 325 REMARK 465 GLY E 326 REMARK 465 HIS E 327 REMARK 465 HIS E 328 REMARK 465 HIS E 329 REMARK 465 HIS E 330 REMARK 465 HIS E 331 REMARK 465 HIS E 332 REMARK 465 THR E 333 REMARK 465 ALA E 520 REMARK 465 PRO E 521 REMARK 465 ALA E 522 REMARK 465 THR E 523 REMARK 465 VAL E 524 REMARK 465 CYS E 525 REMARK 465 GLY E 526 REMARK 465 LYS E 527 REMARK 465 LYS E 528 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 108 CG CD CE NZ REMARK 470 HIS E 519 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 43 -166.76 -103.96 REMARK 500 SER L 30 -126.97 55.42 REMARK 500 ALA L 51 -40.98 70.41 REMARK 500 SER L 52 10.26 -141.57 REMARK 500 ALA E 352 50.49 -112.82 REMARK 500 LEU E 387 -37.14 -130.46 REMARK 500 ASP E 389 43.84 -88.38 REMARK 500 ASN E 422 -52.36 -129.78 REMARK 500 ASN E 487 11.86 58.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BEH RELATED DB: PDB REMARK 900 RELATED ID: 7BEI RELATED DB: PDB REMARK 900 RELATED ID: 7BEJ RELATED DB: PDB REMARK 900 RELATED ID: 7BEK RELATED DB: PDB REMARK 900 RELATED ID: 7BEL RELATED DB: PDB DBREF 7BEM H 1 135 PDB 7BEM 7BEM 1 135 DBREF 7BEM L -2 146 PDB 7BEM 7BEM -2 146 DBREF 7BEM E 333 528 UNP P0DTC2 SPIKE_SARS2 333 528 SEQADV 7BEM GLU E 324 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEM THR E 325 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEM GLY E 326 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEM HIS E 327 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEM HIS E 328 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEM HIS E 329 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEM HIS E 330 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEM HIS E 331 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEM HIS E 332 UNP P0DTC2 EXPRESSION TAG SEQADV 7BEM LYS E 527 UNP P0DTC2 PRO 527 ENGINEERED MUTATION SEQRES 1 H 135 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 135 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 135 LEU THR VAL ASN ARG ASN TYR MET SER TRP ILE ARG GLN SEQRES 4 H 135 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL ILE TYR SEQRES 5 H 135 SER GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 135 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 H 135 SER LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 135 ILE TYR TYR CYS ALA ARG ASP PHE TYR GLU GLY SER PHE SEQRES 9 H 135 ASP ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SER SEQRES 10 H 135 ALA SER THR GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 11 H 135 GLY GLY SER GLY GLY SEQRES 1 L 149 GLY ALA SER ALA ILE GLN LEU THR GLN SER PRO SER PHE SEQRES 2 L 149 LEU SER ALA SER ILE GLY ASP ARG VAL THR ILE THR CYS SEQRES 3 L 149 ARG ALA SER GLN GLY ILE SER SER TYR LEU ALA TRP TYR SEQRES 4 L 149 GLN GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SEQRES 5 L 149 ALA ALA SER THR LEU GLN SER GLY VAL PRO SER ARG PHE SEQRES 6 L 149 SER GLY SER GLY SER GLY THR GLU PHE THR LEU THR ILE SEQRES 7 L 149 SER SER LEU GLN PRO GLU ASP PHE ALA SER TYR TYR CYS SEQRES 8 L 149 GLN GLN LEU ASN SER TYR PRO ALA PRO VAL PHE GLY PRO SEQRES 9 L 149 GLY THR LYS VAL ASP ILE LYS ALA ALA ALA LEU VAL PRO SEQRES 10 L 149 ARG GLY SER SER ALA TRP SER HIS PRO GLN PHE GLU LYS SEQRES 11 L 149 GLY GLY SER GLY GLY GLY SER GLY GLY SER ALA TRP SER SEQRES 12 L 149 HIS PRO GLN PHE GLU LYS SEQRES 1 E 205 GLU THR GLY HIS HIS HIS HIS HIS HIS THR ASN LEU CYS SEQRES 2 E 205 PRO PHE GLY GLU VAL PHE ASN ALA THR ARG PHE ALA SER SEQRES 3 E 205 VAL TYR ALA TRP ASN ARG LYS ARG ILE SER ASN CYS VAL SEQRES 4 E 205 ALA ASP TYR SER VAL LEU TYR ASN SER ALA SER PHE SER SEQRES 5 E 205 THR PHE LYS CYS TYR GLY VAL SER PRO THR LYS LEU ASN SEQRES 6 E 205 ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SER PHE VAL SEQRES 7 E 205 ILE ARG GLY ASP GLU VAL ARG GLN ILE ALA PRO GLY GLN SEQRES 8 E 205 THR GLY LYS ILE ALA ASP TYR ASN TYR LYS LEU PRO ASP SEQRES 9 E 205 ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SER ASN ASN SEQRES 10 E 205 LEU ASP SER LYS VAL GLY GLY ASN TYR ASN TYR LEU TYR SEQRES 11 E 205 ARG LEU PHE ARG LYS SER ASN LEU LYS PRO PHE GLU ARG SEQRES 12 E 205 ASP ILE SER THR GLU ILE TYR GLN ALA GLY SER THR PRO SEQRES 13 E 205 CYS ASN GLY VAL GLU GLY PHE ASN CYS TYR PHE PRO LEU SEQRES 14 E 205 GLN SER TYR GLY PHE GLN PRO THR ASN GLY VAL GLY TYR SEQRES 15 E 205 GLN PRO TYR ARG VAL VAL VAL LEU SER PHE GLU LEU LEU SEQRES 16 E 205 HIS ALA PRO ALA THR VAL CYS GLY LYS LYS HET NAG A 1 14 HET NAG A 2 14 HET FUC A 3 10 HET GOL H 501 6 HET CL H 502 1 HET PO4 L 201 5 HET PO4 L 202 5 HET GOL E 801 6 HET PRO E 802 8 HET PRO E 803 8 HET PRO E 804 8 HET PRO E 805 8 HET CL E 806 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETNAM PRO PROLINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 CL 2(CL 1-) FORMUL 7 PO4 2(O4 P 3-) FORMUL 10 PRO 4(C5 H9 N O2) FORMUL 15 HOH *33(H2 O) HELIX 1 AA1 THR H 28 ASN H 32 5 5 HELIX 2 AA2 ASP H 61 LYS H 64 5 4 HELIX 3 AA3 ARG H 86 THR H 90 5 5 HELIX 4 AA4 GLN L 79 PHE L 83 5 5 HELIX 5 AA5 PRO E 337 ASN E 343 1 7 HELIX 6 AA6 SER E 349 TRP E 353 5 5 HELIX 7 AA7 TYR E 365 SER E 371 1 7 HELIX 8 AA8 ASP E 405 ILE E 410 5 6 HELIX 9 AA9 GLY E 416 ASN E 422 1 7 HELIX 10 AB1 SER E 438 SER E 443 1 6 HELIX 11 AB2 GLY E 502 TYR E 505 5 4 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 LEU H 11 ILE H 12 0 SHEET 2 AA2 6 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AA2 6 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N ILE H 37 O TYR H 94 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O PHE H 58 N VAL H 50 SHEET 1 AA3 4 LEU H 11 ILE H 12 0 SHEET 2 AA3 4 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AA3 4 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA3 4 PHE H 104 TRP H 107 -1 O ILE H 106 N ARG H 97 SHEET 1 AA4 4 LEU L 4 SER L 7 0 SHEET 2 AA4 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA4 4 GLU L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AA4 4 PHE L 62 GLY L 66 -1 N SER L 63 O THR L 74 SHEET 1 AA5 6 PHE L 10 ALA L 13 0 SHEET 2 AA5 6 THR L 103 ILE L 107 1 O ASP L 106 N LEU L 11 SHEET 3 AA5 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 105 SHEET 4 AA5 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA5 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA5 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA6 4 PHE L 10 ALA L 13 0 SHEET 2 AA6 4 THR L 103 ILE L 107 1 O ASP L 106 N LEU L 11 SHEET 3 AA6 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 105 SHEET 4 AA6 4 VAL L 98 PHE L 99 -1 O VAL L 98 N GLN L 90 SHEET 1 AA7 5 ASN E 354 ILE E 358 0 SHEET 2 AA7 5 VAL E 395 ARG E 403 -1 O ALA E 397 N LYS E 356 SHEET 3 AA7 5 PRO E 507 PHE E 515 -1 O VAL E 512 N ASP E 398 SHEET 4 AA7 5 GLY E 431 ASN E 437 -1 N ILE E 434 O VAL E 511 SHEET 5 AA7 5 THR E 376 TYR E 380 -1 N TYR E 380 O GLY E 431 SHEET 1 AA8 2 LEU E 452 ARG E 454 0 SHEET 2 AA8 2 LEU E 492 SER E 494 -1 O GLN E 493 N TYR E 453 SHEET 1 AA9 2 TYR E 473 GLN E 474 0 SHEET 2 AA9 2 CYS E 488 TYR E 489 -1 O TYR E 489 N TYR E 473 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.03 SSBOND 2 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 3 CYS E 336 CYS E 361 1555 1555 2.03 SSBOND 4 CYS E 379 CYS E 432 1555 1555 2.04 SSBOND 5 CYS E 480 CYS E 488 1555 1555 2.04 LINK ND2 ASN E 343 C1 NAG A 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.45 LINK O6 NAG A 1 C1 FUC A 3 1555 1555 1.44 CISPEP 1 SER L 7 PRO L 8 0 -1.12 CISPEP 2 TYR L 94 PRO L 95 0 0.83 CRYST1 173.614 173.614 120.642 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005760 0.003325 0.000000 0.00000 SCALE2 0.000000 0.006651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008289 0.00000