HEADER RIBOSOMAL PROTEIN 02-JAN-21 7BFF TITLE CIRCULAR PERMUTANT OF RIBOSOMAL PROTEIN S6, P54-55 TRUNCATED, I25A TITLE 2 MUTANT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S6,30S RIBOSOMAL PROTEIN S6; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: TS9,TS9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 GENE: RPSF, TTHA0245; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS CIRCULAR PERMUTANT, NATIVE STACKING, , DESIGNED AMYLOID FIBRIL, KEYWDS 2 RIBOSOMAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,D.T.LOGAN,M.OLIVEBERG REVDAT 2 31-JAN-24 7BFF 1 REMARK REVDAT 1 13-JUL-22 7BFF 0 JRNL AUTH H.WANG,D.T.LOGAN,M.OLIVEBERG JRNL TITL CIRCULAR PERMUTANT OF RIBOSOMAL PROTEIN S6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.9 REMARK 3 NUMBER OF REFLECTIONS : 56610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4972 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.89000 REMARK 3 B22 (A**2) : 1.60000 REMARK 3 B33 (A**2) : -3.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.136 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4237 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4024 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5730 ; 1.980 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9259 ; 1.491 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 6.906 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 301 ;32.782 ;21.096 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 778 ;15.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;14.906 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4809 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 937 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -38 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6785 -10.5094 10.1535 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: 0.0788 REMARK 3 T33: 0.1145 T12: 0.0053 REMARK 3 T13: 0.0035 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.5785 L22: 0.7289 REMARK 3 L33: 0.8588 L12: -0.1168 REMARK 3 L13: 0.2252 L23: -0.0600 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: -0.0180 S13: -0.0442 REMARK 3 S21: -0.0338 S22: 0.0946 S23: 0.0178 REMARK 3 S31: -0.0109 S32: 0.0567 S33: -0.0283 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -39 B 46 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7247 -3.8042 29.5627 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: 0.0942 REMARK 3 T33: 0.1070 T12: 0.0069 REMARK 3 T13: -0.0060 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.5665 L22: 0.2504 REMARK 3 L33: 1.5826 L12: -0.2308 REMARK 3 L13: 0.2641 L23: 0.1068 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.0769 S13: -0.0042 REMARK 3 S21: 0.0148 S22: -0.0234 S23: 0.0309 REMARK 3 S31: -0.1188 S32: 0.2445 S33: -0.0015 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -39 C 46 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6522 4.9081 84.1049 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0753 REMARK 3 T33: 0.1313 T12: -0.0198 REMARK 3 T13: -0.0030 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.7071 L22: 1.0913 REMARK 3 L33: 1.0520 L12: 0.6604 REMARK 3 L13: -0.4750 L23: -0.3995 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.0440 S13: 0.0180 REMARK 3 S21: -0.0736 S22: -0.0007 S23: 0.0564 REMARK 3 S31: -0.0111 S32: 0.0122 S33: 0.0116 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -38 D 46 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2705 -5.9897 66.4258 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.0452 REMARK 3 T33: 0.0899 T12: 0.0028 REMARK 3 T13: 0.0022 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.1965 L22: 2.2616 REMARK 3 L33: 1.1929 L12: 0.1950 REMARK 3 L13: 0.2563 L23: 1.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: -0.0660 S13: 0.0065 REMARK 3 S21: -0.1643 S22: -0.0290 S23: -0.0625 REMARK 3 S31: 0.1020 S32: 0.0283 S33: 0.0100 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E -37 E 45 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6570 -2.8902 48.2312 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.0106 REMARK 3 T33: 0.1152 T12: 0.0114 REMARK 3 T13: -0.0031 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.4389 L22: 1.5674 REMARK 3 L33: 0.6916 L12: -0.1158 REMARK 3 L13: -0.0230 L23: -0.3729 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: 0.0561 S13: -0.0208 REMARK 3 S21: 0.1184 S22: 0.0109 S23: 0.0762 REMARK 3 S31: -0.0068 S32: -0.0138 S33: -0.0008 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F -38 F 46 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3764 -1.6088 104.0925 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0789 REMARK 3 T33: 0.1104 T12: -0.0290 REMARK 3 T13: 0.0276 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.4192 L22: 0.4371 REMARK 3 L33: 0.9823 L12: 0.0961 REMARK 3 L13: -0.0273 L23: 0.0621 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 0.1722 S13: -0.0831 REMARK 3 S21: 0.1130 S22: 0.0309 S23: 0.0554 REMARK 3 S31: -0.0519 S32: 0.0685 S33: 0.0247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7BFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59779 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 68.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.85600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM THIOCYANATE 20% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.34550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.17850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 111.17850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.34550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ARG A 85 REMARK 465 MET D 0 REMARK 465 MET E 0 REMARK 465 GLN E 1 REMARK 465 ARG E 85 REMARK 465 MET F 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 101 O HOH E 107 1.90 REMARK 500 NH2 ARG E 31 O HOH E 101 2.02 REMARK 500 O PRO D 40 O HOH D 101 2.04 REMARK 500 O HOH D 118 O HOH D 121 2.06 REMARK 500 NE ARG B 31 O HOH B 101 2.11 REMARK 500 N THR D 38 O HOH D 102 2.13 REMARK 500 OD1 ASN B 28 O HOH B 102 2.13 REMARK 500 OE1 GLN B 66 O HOH B 103 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG D 75 OE1 GLU E 10 3445 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 80 CD GLU B 80 OE1 -0.095 REMARK 500 GLU C 22 CD GLU C 22 OE1 0.068 REMARK 500 GLU D 10 CD GLU D 10 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR C 43 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG D 42 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG E 75 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG F 30 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG F 30 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN F 52 51.09 -116.39 REMARK 500 REMARK 500 REMARK: NULL DBREF 7BFF A 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFF A 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFF B 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFF B 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFF C 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFF C 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFF D 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFF D 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFF E 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFF E 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFF F 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFF F 42 85 UNP Q5SLP8 RS6_THET8 3 46 SEQADV 7BFF MET A 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFF ALA A 36 UNP Q5SLP8 LINKER SEQADV 7BFF SER A 37 UNP Q5SLP8 LINKER SEQADV 7BFF THR A 38 UNP Q5SLP8 LINKER SEQADV 7BFF THR A 39 UNP Q5SLP8 LINKER SEQADV 7BFF PRO A 40 UNP Q5SLP8 LINKER SEQADV 7BFF GLY A 41 UNP Q5SLP8 LINKER SEQADV 7BFF ALA A 64 UNP Q5SLP8 ILE 25 ENGINEERED MUTATION SEQADV 7BFF MET B 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFF ALA B 36 UNP Q5SLP8 LINKER SEQADV 7BFF SER B 37 UNP Q5SLP8 LINKER SEQADV 7BFF THR B 38 UNP Q5SLP8 LINKER SEQADV 7BFF THR B 39 UNP Q5SLP8 LINKER SEQADV 7BFF PRO B 40 UNP Q5SLP8 LINKER SEQADV 7BFF GLY B 41 UNP Q5SLP8 LINKER SEQADV 7BFF ALA B 64 UNP Q5SLP8 ILE 25 ENGINEERED MUTATION SEQADV 7BFF MET C 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFF ALA C 36 UNP Q5SLP8 LINKER SEQADV 7BFF SER C 37 UNP Q5SLP8 LINKER SEQADV 7BFF THR C 38 UNP Q5SLP8 LINKER SEQADV 7BFF THR C 39 UNP Q5SLP8 LINKER SEQADV 7BFF PRO C 40 UNP Q5SLP8 LINKER SEQADV 7BFF GLY C 41 UNP Q5SLP8 LINKER SEQADV 7BFF ALA C 64 UNP Q5SLP8 ILE 25 ENGINEERED MUTATION SEQADV 7BFF MET D 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFF ALA D 36 UNP Q5SLP8 LINKER SEQADV 7BFF SER D 37 UNP Q5SLP8 LINKER SEQADV 7BFF THR D 38 UNP Q5SLP8 LINKER SEQADV 7BFF THR D 39 UNP Q5SLP8 LINKER SEQADV 7BFF PRO D 40 UNP Q5SLP8 LINKER SEQADV 7BFF GLY D 41 UNP Q5SLP8 LINKER SEQADV 7BFF ALA D 64 UNP Q5SLP8 ILE 25 ENGINEERED MUTATION SEQADV 7BFF MET E 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFF ALA E 36 UNP Q5SLP8 LINKER SEQADV 7BFF SER E 37 UNP Q5SLP8 LINKER SEQADV 7BFF THR E 38 UNP Q5SLP8 LINKER SEQADV 7BFF THR E 39 UNP Q5SLP8 LINKER SEQADV 7BFF PRO E 40 UNP Q5SLP8 LINKER SEQADV 7BFF GLY E 41 UNP Q5SLP8 LINKER SEQADV 7BFF ALA E 64 UNP Q5SLP8 ILE 25 ENGINEERED MUTATION SEQADV 7BFF MET F 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFF ALA F 36 UNP Q5SLP8 LINKER SEQADV 7BFF SER F 37 UNP Q5SLP8 LINKER SEQADV 7BFF THR F 38 UNP Q5SLP8 LINKER SEQADV 7BFF THR F 39 UNP Q5SLP8 LINKER SEQADV 7BFF PRO F 40 UNP Q5SLP8 LINKER SEQADV 7BFF GLY F 41 UNP Q5SLP8 LINKER SEQADV 7BFF ALA F 64 UNP Q5SLP8 ILE 25 ENGINEERED MUTATION SEQRES 1 A 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 A 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 A 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 A 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 A 86 ASN LEU ASP GLN SER GLN LEU ALA LEU GLU LYS GLU ALA SEQRES 6 A 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 A 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 B 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 B 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 B 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 B 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 B 86 ASN LEU ASP GLN SER GLN LEU ALA LEU GLU LYS GLU ALA SEQRES 6 B 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 B 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 C 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 C 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 C 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 C 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 C 86 ASN LEU ASP GLN SER GLN LEU ALA LEU GLU LYS GLU ALA SEQRES 6 C 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 C 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 D 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 D 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 D 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 D 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 D 86 ASN LEU ASP GLN SER GLN LEU ALA LEU GLU LYS GLU ALA SEQRES 6 D 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 D 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 E 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 E 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 E 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 E 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 E 86 ASN LEU ASP GLN SER GLN LEU ALA LEU GLU LYS GLU ALA SEQRES 6 E 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 E 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 F 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 F 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 F 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 F 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 F 86 ASN LEU ASP GLN SER GLN LEU ALA LEU GLU LYS GLU ALA SEQRES 6 F 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 F 86 LYS VAL GLU GLU LEU GLY LEU ARG FORMUL 7 HOH *203(H2 O) HELIX 1 AA1 PRO A 12 ASP A 14 5 3 HELIX 2 AA2 ARG A 15 ARG A 26 1 12 HELIX 3 AA3 ASP A 54 TYR A 72 1 19 HELIX 4 AA4 PRO B 12 ILE B 25 1 14 HELIX 5 AA5 ASP B 54 TYR B 72 1 19 HELIX 6 AA6 PRO C 12 ASP C 14 5 3 HELIX 7 AA7 ARG C 15 ILE C 25 1 11 HELIX 8 AA8 ASP C 54 TYR C 72 1 19 HELIX 9 AA9 PRO D 12 ASP D 14 5 3 HELIX 10 AB1 ARG D 15 ARG D 26 1 12 HELIX 11 AB2 ASP D 54 TYR D 72 1 19 HELIX 12 AB3 PRO E 12 ASP E 14 5 3 HELIX 13 AB4 ARG E 15 ILE E 25 1 11 HELIX 14 AB5 ASP E 54 TYR E 72 1 19 HELIX 15 AB6 PRO F 12 ASP F 14 5 3 HELIX 16 AB7 ARG F 15 ILE F 25 1 11 HELIX 17 AB8 ASP F 54 TYR F 72 1 19 SHEET 1 AA124 ARG A 75 LEU A 82 0 SHEET 2 AA124 TYR A 3 GLU A 10 -1 N GLN A 8 O GLU A 77 SHEET 3 AA124 ARG A 42 LEU A 49 -1 O TYR A 43 N VAL A 9 SHEET 4 AA124 VAL A 29 ALA A 36 -1 N ARG A 30 O VAL A 48 SHEET 5 AA124 ARG B 75 GLY B 83 1 O GLU B 81 N VAL A 34 SHEET 6 AA124 PHE B 4 GLU B 10 -1 N TRP B 6 O GLU B 80 SHEET 7 AA124 ARG B 42 LEU B 49 -1 O TYR B 43 N VAL B 9 SHEET 8 AA124 VAL B 29 ALA B 36 -1 N MET B 33 O ASN B 46 SHEET 9 AA124 ARG E 75 GLY E 83 1 O GLY E 83 N ALA B 36 SHEET 10 AA124 PHE E 4 GLU E 10 -1 N GLN E 8 O GLU E 77 SHEET 11 AA124 ARG E 42 LEU E 49 -1 O TYR E 43 N VAL E 9 SHEET 12 AA124 VAL E 29 ALA E 36 -1 N ARG E 30 O VAL E 48 SHEET 13 AA124 ARG D 75 GLY D 83 1 N GLU D 81 O VAL E 32 SHEET 14 AA124 PHE D 4 GLU D 10 -1 N GLU D 10 O ARG D 75 SHEET 15 AA124 ARG D 42 LEU D 49 -1 O ILE D 47 N LEU D 5 SHEET 16 AA124 VAL D 29 ALA D 36 -1 N VAL D 35 O GLU D 44 SHEET 17 AA124 ARG C 75 GLY C 83 1 N GLY C 83 O VAL D 34 SHEET 18 AA124 PHE C 4 GLU C 10 -1 N GLN C 8 O GLU C 77 SHEET 19 AA124 ARG C 42 LEU C 49 -1 O TYR C 43 N VAL C 9 SHEET 20 AA124 VAL C 29 ALA C 36 -1 N MET C 33 O ASN C 46 SHEET 21 AA124 ARG F 75 GLY F 83 1 O GLU F 81 N VAL C 34 SHEET 22 AA124 PHE F 4 GLU F 10 -1 N PHE F 4 O LEU F 82 SHEET 23 AA124 ARG F 42 LEU F 49 -1 O ILE F 47 N LEU F 5 SHEET 24 AA124 VAL F 29 ALA F 36 -1 N MET F 33 O ASN F 46 CRYST1 38.691 68.070 222.357 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025846 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004497 0.00000