data_7BGJ # _entry.id 7BGJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7BGJ WWPDB D_1292108907 EMDB EMD-12181 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'C. thermophilum Pyruvate Dehydrogenase Complex Core' _pdbx_database_related.db_id EMD-12181 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7BGJ _pdbx_database_status.recvd_initial_deposition_date 2021-01-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tueting, C.' 1 ? 'Kastritis, P.L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 34 _citation.language ? _citation.page_first 108727 _citation.page_last 108727 _citation.title 'Integrative structure of a 10-megadalton eukaryotic pyruvate dehydrogenase complex from native cell extracts.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2021.108727 _citation.pdbx_database_id_PubMed 33567276 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kyrilis, F.L.' 1 ? primary 'Semchonok, D.A.' 2 ? primary 'Skalidis, I.' 3 ? primary 'Tuting, C.' 4 ? primary 'Hamdi, F.' 5 ? primary ;O'Reilly, F.J. ; 6 ? primary 'Rappsilber, J.' 7 ? primary 'Kastritis, P.L.' 8 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7BGJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Acetyltransferase component of pyruvate dehydrogenase complex' _entity.formula_weight 48777.488 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.3.1.12 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLAQVLRRQALQHVRLARAAAPSLTRWYASYPPHTIVKMPALSPTMTSGNIGAWQKKPGDAITPGEVLVEIETDKAQMDF EFQEEGVLAKILKETGEKDVAVGSPIAVLVEEGTDINAFQNFTLEDAGGDAAAPAAPAKEELAKAETAPTPASTSAPEPE ETTSTGKLEPALDREPNVSFAAKKLAHELDVPLKALKGTGPGGKITEEDVKKAASAPAAAAAAPGAAYQDIPISNMRKTI ATRLKESVSENPHFFVTSELSVSKLLKLRQALNSSAEGRYKLSVNDFLIKAIAVACKRVPAVNSSWRDGVIRQFDTVDVS VAVATPTGLITPIVKGVEAKGLETISATVKELAKKARDGKLKPEDYQGGTISISNMGMNPAVERFTAIINPPQAAILAVG TTKKVAVPVENEDGTTGVEWDDQIVVTASFDHKVVDGAVGAEWMRELKKVVENPLELLL ; _entity_poly.pdbx_seq_one_letter_code_can ;MLAQVLRRQALQHVRLARAAAPSLTRWYASYPPHTIVKMPALSPTMTSGNIGAWQKKPGDAITPGEVLVEIETDKAQMDF EFQEEGVLAKILKETGEKDVAVGSPIAVLVEEGTDINAFQNFTLEDAGGDAAAPAAPAKEELAKAETAPTPASTSAPEPE ETTSTGKLEPALDREPNVSFAAKKLAHELDVPLKALKGTGPGGKITEEDVKKAASAPAAAAAAPGAAYQDIPISNMRKTI ATRLKESVSENPHFFVTSELSVSKLLKLRQALNSSAEGRYKLSVNDFLIKAIAVACKRVPAVNSSWRDGVIRQFDTVDVS VAVATPTGLITPIVKGVEAKGLETISATVKELAKKARDGKLKPEDYQGGTISISNMGMNPAVERFTAIINPPQAAILAVG TTKKVAVPVENEDGTTGVEWDDQIVVTASFDHKVVDGAVGAEWMRELKKVVENPLELLL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 ALA n 1 4 GLN n 1 5 VAL n 1 6 LEU n 1 7 ARG n 1 8 ARG n 1 9 GLN n 1 10 ALA n 1 11 LEU n 1 12 GLN n 1 13 HIS n 1 14 VAL n 1 15 ARG n 1 16 LEU n 1 17 ALA n 1 18 ARG n 1 19 ALA n 1 20 ALA n 1 21 ALA n 1 22 PRO n 1 23 SER n 1 24 LEU n 1 25 THR n 1 26 ARG n 1 27 TRP n 1 28 TYR n 1 29 ALA n 1 30 SER n 1 31 TYR n 1 32 PRO n 1 33 PRO n 1 34 HIS n 1 35 THR n 1 36 ILE n 1 37 VAL n 1 38 LYS n 1 39 MET n 1 40 PRO n 1 41 ALA n 1 42 LEU n 1 43 SER n 1 44 PRO n 1 45 THR n 1 46 MET n 1 47 THR n 1 48 SER n 1 49 GLY n 1 50 ASN n 1 51 ILE n 1 52 GLY n 1 53 ALA n 1 54 TRP n 1 55 GLN n 1 56 LYS n 1 57 LYS n 1 58 PRO n 1 59 GLY n 1 60 ASP n 1 61 ALA n 1 62 ILE n 1 63 THR n 1 64 PRO n 1 65 GLY n 1 66 GLU n 1 67 VAL n 1 68 LEU n 1 69 VAL n 1 70 GLU n 1 71 ILE n 1 72 GLU n 1 73 THR n 1 74 ASP n 1 75 LYS n 1 76 ALA n 1 77 GLN n 1 78 MET n 1 79 ASP n 1 80 PHE n 1 81 GLU n 1 82 PHE n 1 83 GLN n 1 84 GLU n 1 85 GLU n 1 86 GLY n 1 87 VAL n 1 88 LEU n 1 89 ALA n 1 90 LYS n 1 91 ILE n 1 92 LEU n 1 93 LYS n 1 94 GLU n 1 95 THR n 1 96 GLY n 1 97 GLU n 1 98 LYS n 1 99 ASP n 1 100 VAL n 1 101 ALA n 1 102 VAL n 1 103 GLY n 1 104 SER n 1 105 PRO n 1 106 ILE n 1 107 ALA n 1 108 VAL n 1 109 LEU n 1 110 VAL n 1 111 GLU n 1 112 GLU n 1 113 GLY n 1 114 THR n 1 115 ASP n 1 116 ILE n 1 117 ASN n 1 118 ALA n 1 119 PHE n 1 120 GLN n 1 121 ASN n 1 122 PHE n 1 123 THR n 1 124 LEU n 1 125 GLU n 1 126 ASP n 1 127 ALA n 1 128 GLY n 1 129 GLY n 1 130 ASP n 1 131 ALA n 1 132 ALA n 1 133 ALA n 1 134 PRO n 1 135 ALA n 1 136 ALA n 1 137 PRO n 1 138 ALA n 1 139 LYS n 1 140 GLU n 1 141 GLU n 1 142 LEU n 1 143 ALA n 1 144 LYS n 1 145 ALA n 1 146 GLU n 1 147 THR n 1 148 ALA n 1 149 PRO n 1 150 THR n 1 151 PRO n 1 152 ALA n 1 153 SER n 1 154 THR n 1 155 SER n 1 156 ALA n 1 157 PRO n 1 158 GLU n 1 159 PRO n 1 160 GLU n 1 161 GLU n 1 162 THR n 1 163 THR n 1 164 SER n 1 165 THR n 1 166 GLY n 1 167 LYS n 1 168 LEU n 1 169 GLU n 1 170 PRO n 1 171 ALA n 1 172 LEU n 1 173 ASP n 1 174 ARG n 1 175 GLU n 1 176 PRO n 1 177 ASN n 1 178 VAL n 1 179 SER n 1 180 PHE n 1 181 ALA n 1 182 ALA n 1 183 LYS n 1 184 LYS n 1 185 LEU n 1 186 ALA n 1 187 HIS n 1 188 GLU n 1 189 LEU n 1 190 ASP n 1 191 VAL n 1 192 PRO n 1 193 LEU n 1 194 LYS n 1 195 ALA n 1 196 LEU n 1 197 LYS n 1 198 GLY n 1 199 THR n 1 200 GLY n 1 201 PRO n 1 202 GLY n 1 203 GLY n 1 204 LYS n 1 205 ILE n 1 206 THR n 1 207 GLU n 1 208 GLU n 1 209 ASP n 1 210 VAL n 1 211 LYS n 1 212 LYS n 1 213 ALA n 1 214 ALA n 1 215 SER n 1 216 ALA n 1 217 PRO n 1 218 ALA n 1 219 ALA n 1 220 ALA n 1 221 ALA n 1 222 ALA n 1 223 ALA n 1 224 PRO n 1 225 GLY n 1 226 ALA n 1 227 ALA n 1 228 TYR n 1 229 GLN n 1 230 ASP n 1 231 ILE n 1 232 PRO n 1 233 ILE n 1 234 SER n 1 235 ASN n 1 236 MET n 1 237 ARG n 1 238 LYS n 1 239 THR n 1 240 ILE n 1 241 ALA n 1 242 THR n 1 243 ARG n 1 244 LEU n 1 245 LYS n 1 246 GLU n 1 247 SER n 1 248 VAL n 1 249 SER n 1 250 GLU n 1 251 ASN n 1 252 PRO n 1 253 HIS n 1 254 PHE n 1 255 PHE n 1 256 VAL n 1 257 THR n 1 258 SER n 1 259 GLU n 1 260 LEU n 1 261 SER n 1 262 VAL n 1 263 SER n 1 264 LYS n 1 265 LEU n 1 266 LEU n 1 267 LYS n 1 268 LEU n 1 269 ARG n 1 270 GLN n 1 271 ALA n 1 272 LEU n 1 273 ASN n 1 274 SER n 1 275 SER n 1 276 ALA n 1 277 GLU n 1 278 GLY n 1 279 ARG n 1 280 TYR n 1 281 LYS n 1 282 LEU n 1 283 SER n 1 284 VAL n 1 285 ASN n 1 286 ASP n 1 287 PHE n 1 288 LEU n 1 289 ILE n 1 290 LYS n 1 291 ALA n 1 292 ILE n 1 293 ALA n 1 294 VAL n 1 295 ALA n 1 296 CYS n 1 297 LYS n 1 298 ARG n 1 299 VAL n 1 300 PRO n 1 301 ALA n 1 302 VAL n 1 303 ASN n 1 304 SER n 1 305 SER n 1 306 TRP n 1 307 ARG n 1 308 ASP n 1 309 GLY n 1 310 VAL n 1 311 ILE n 1 312 ARG n 1 313 GLN n 1 314 PHE n 1 315 ASP n 1 316 THR n 1 317 VAL n 1 318 ASP n 1 319 VAL n 1 320 SER n 1 321 VAL n 1 322 ALA n 1 323 VAL n 1 324 ALA n 1 325 THR n 1 326 PRO n 1 327 THR n 1 328 GLY n 1 329 LEU n 1 330 ILE n 1 331 THR n 1 332 PRO n 1 333 ILE n 1 334 VAL n 1 335 LYS n 1 336 GLY n 1 337 VAL n 1 338 GLU n 1 339 ALA n 1 340 LYS n 1 341 GLY n 1 342 LEU n 1 343 GLU n 1 344 THR n 1 345 ILE n 1 346 SER n 1 347 ALA n 1 348 THR n 1 349 VAL n 1 350 LYS n 1 351 GLU n 1 352 LEU n 1 353 ALA n 1 354 LYS n 1 355 LYS n 1 356 ALA n 1 357 ARG n 1 358 ASP n 1 359 GLY n 1 360 LYS n 1 361 LEU n 1 362 LYS n 1 363 PRO n 1 364 GLU n 1 365 ASP n 1 366 TYR n 1 367 GLN n 1 368 GLY n 1 369 GLY n 1 370 THR n 1 371 ILE n 1 372 SER n 1 373 ILE n 1 374 SER n 1 375 ASN n 1 376 MET n 1 377 GLY n 1 378 MET n 1 379 ASN n 1 380 PRO n 1 381 ALA n 1 382 VAL n 1 383 GLU n 1 384 ARG n 1 385 PHE n 1 386 THR n 1 387 ALA n 1 388 ILE n 1 389 ILE n 1 390 ASN n 1 391 PRO n 1 392 PRO n 1 393 GLN n 1 394 ALA n 1 395 ALA n 1 396 ILE n 1 397 LEU n 1 398 ALA n 1 399 VAL n 1 400 GLY n 1 401 THR n 1 402 THR n 1 403 LYS n 1 404 LYS n 1 405 VAL n 1 406 ALA n 1 407 VAL n 1 408 PRO n 1 409 VAL n 1 410 GLU n 1 411 ASN n 1 412 GLU n 1 413 ASP n 1 414 GLY n 1 415 THR n 1 416 THR n 1 417 GLY n 1 418 VAL n 1 419 GLU n 1 420 TRP n 1 421 ASP n 1 422 ASP n 1 423 GLN n 1 424 ILE n 1 425 VAL n 1 426 VAL n 1 427 THR n 1 428 ALA n 1 429 SER n 1 430 PHE n 1 431 ASP n 1 432 HIS n 1 433 LYS n 1 434 VAL n 1 435 VAL n 1 436 ASP n 1 437 GLY n 1 438 ALA n 1 439 VAL n 1 440 GLY n 1 441 ALA n 1 442 GLU n 1 443 TRP n 1 444 MET n 1 445 ARG n 1 446 GLU n 1 447 LEU n 1 448 LYS n 1 449 LYS n 1 450 VAL n 1 451 VAL n 1 452 GLU n 1 453 ASN n 1 454 PRO n 1 455 LEU n 1 456 GLU n 1 457 LEU n 1 458 LEU n 1 459 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 459 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Chaetomium thermophilum var. thermophilum DSM 1495' _entity_src_nat.pdbx_ncbi_taxonomy_id 759272 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code G0S4X6_CHATD _struct_ref.pdbx_db_accession G0S4X6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLAQVLRRQALQHVRLARAAAPSLTRWYASYPPHTIVKMPALSPTMTSGNIGAWQKKPGDAITPGEVLVEIETDKAQMDF EFQEEGVLAKILKETGEKDVAVGSPIAVLVEEGTDINAFQNFTLEDAGGDAAAPAAPAKEELAKAETAPTPASTSAPEPE ETTSTGKLEPALDREPNVSFAAKKLAHELDVPLKALKGTGPGGKITEEDVKKAASAPAAAAAAPGAAYQDIPISNMRKTI ATRLKESVSENPHFFVTSELSVSKLLKLRQALNSSAEGRYKLSVNDFLIKAIAVACKRVPAVNSSWRDGVIRQFDTVDVS VAVATPTGLITPIVKGVEAKGLETISATVKELAKKARDGKLKPEDYQGGTISISNMGMNPAVERFTAIINPPQAAILAVG TTKKVAVPVENEDGTTGVEWDDQIVVTASFDHKVVDGAVGAEWMRELKKVVENPLELLL ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7BGJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 459 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession G0S4X6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 459 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 31 _struct_ref_seq.pdbx_auth_seq_align_end 489 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7BGJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 724.04 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7BGJ _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0075 ? 1600 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.1134 ? 2173 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0595 ? 264 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0061 ? 276 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 22.7131 ? 591 ? f_dihedral_angle_d ? ? # _struct.entry_id 7BGJ _struct.title 'C. thermophilum Pyruvate Dehydrogenase Complex Core' _struct.pdbx_descriptor 'Acetyltransferase component of pyruvate dehydrogenase complex (E.C.2.3.1.12)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7BGJ _struct_keywords.text 'Dihydrolipoyl, transacetylase, E2, Pyruvate, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 262 ? ALA A 276 ? VAL A 292 ALA A 306 1 ? 15 HELX_P HELX_P2 AA2 SER A 283 ? VAL A 299 ? SER A 313 VAL A 329 1 ? 17 HELX_P HELX_P3 AA3 GLY A 336 ? LYS A 340 ? GLY A 366 LYS A 370 5 ? 5 HELX_P HELX_P4 AA4 LEU A 342 ? ASP A 358 ? LEU A 372 ASP A 388 1 ? 17 HELX_P HELX_P5 AA5 LYS A 362 ? TYR A 366 ? LYS A 392 TYR A 396 5 ? 5 HELX_P HELX_P6 AA6 ASP A 436 ? ASN A 453 ? ASP A 466 ASN A 483 1 ? 18 HELX_P HELX_P7 AA7 ASN A 453 ? LEU A 458 ? ASN A 483 LEU A 488 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 254 ? PHE A 255 ? PHE A 284 PHE A 285 AA1 2 GLU A 419 ? PHE A 430 ? GLU A 449 PHE A 460 AA1 3 ALA A 395 ? VAL A 407 ? ALA A 425 VAL A 437 AA1 4 SER A 372 ? ASN A 375 ? SER A 402 ASN A 405 AA1 5 VAL A 319 ? ALA A 324 ? VAL A 349 ALA A 354 AA1 6 LEU A 329 ? ILE A 330 ? LEU A 359 ILE A 360 AA2 1 PHE A 254 ? PHE A 255 ? PHE A 284 PHE A 285 AA2 2 GLU A 419 ? PHE A 430 ? GLU A 449 PHE A 460 AA2 3 ALA A 395 ? VAL A 407 ? ALA A 425 VAL A 437 AA2 4 SER A 372 ? ASN A 375 ? SER A 402 ASN A 405 AA2 5 VAL A 319 ? ALA A 324 ? VAL A 349 ALA A 354 AA2 6 ILE A 333 ? VAL A 334 ? ILE A 363 VAL A 364 AA3 1 SER A 304 ? TRP A 306 ? SER A 334 TRP A 336 AA3 2 ILE A 311 ? GLN A 313 ? ILE A 341 GLN A 343 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 254 ? N PHE A 284 O PHE A 430 ? O PHE A 460 AA1 2 3 O THR A 427 ? O THR A 457 N ALA A 398 ? N ALA A 428 AA1 3 4 O LEU A 397 ? O LEU A 427 N SER A 374 ? N SER A 404 AA1 4 5 O ILE A 373 ? O ILE A 403 N SER A 320 ? N SER A 350 AA1 5 6 N VAL A 323 ? N VAL A 353 O ILE A 330 ? O ILE A 360 AA2 1 2 N PHE A 254 ? N PHE A 284 O PHE A 430 ? O PHE A 460 AA2 2 3 O THR A 427 ? O THR A 457 N ALA A 398 ? N ALA A 428 AA2 3 4 O LEU A 397 ? O LEU A 427 N SER A 374 ? N SER A 404 AA2 4 5 O ILE A 373 ? O ILE A 403 N SER A 320 ? N SER A 350 AA2 5 6 N VAL A 319 ? N VAL A 349 O VAL A 334 ? O VAL A 364 AA3 1 2 N SER A 305 ? N SER A 335 O ARG A 312 ? O ARG A 342 # _atom_sites.entry_id 7BGJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 31 ? ? ? A . n A 1 2 LEU 2 32 ? ? ? A . n A 1 3 ALA 3 33 ? ? ? A . n A 1 4 GLN 4 34 ? ? ? A . n A 1 5 VAL 5 35 ? ? ? A . n A 1 6 LEU 6 36 ? ? ? A . n A 1 7 ARG 7 37 ? ? ? A . n A 1 8 ARG 8 38 ? ? ? A . n A 1 9 GLN 9 39 ? ? ? A . n A 1 10 ALA 10 40 ? ? ? A . n A 1 11 LEU 11 41 ? ? ? A . n A 1 12 GLN 12 42 ? ? ? A . n A 1 13 HIS 13 43 ? ? ? A . n A 1 14 VAL 14 44 ? ? ? A . n A 1 15 ARG 15 45 ? ? ? A . n A 1 16 LEU 16 46 ? ? ? A . n A 1 17 ALA 17 47 ? ? ? A . n A 1 18 ARG 18 48 ? ? ? A . n A 1 19 ALA 19 49 ? ? ? A . n A 1 20 ALA 20 50 ? ? ? A . n A 1 21 ALA 21 51 ? ? ? A . n A 1 22 PRO 22 52 ? ? ? A . n A 1 23 SER 23 53 ? ? ? A . n A 1 24 LEU 24 54 ? ? ? A . n A 1 25 THR 25 55 ? ? ? A . n A 1 26 ARG 26 56 ? ? ? A . n A 1 27 TRP 27 57 ? ? ? A . n A 1 28 TYR 28 58 ? ? ? A . n A 1 29 ALA 29 59 ? ? ? A . n A 1 30 SER 30 60 ? ? ? A . n A 1 31 TYR 31 61 ? ? ? A . n A 1 32 PRO 32 62 ? ? ? A . n A 1 33 PRO 33 63 ? ? ? A . n A 1 34 HIS 34 64 ? ? ? A . n A 1 35 THR 35 65 ? ? ? A . n A 1 36 ILE 36 66 ? ? ? A . n A 1 37 VAL 37 67 ? ? ? A . n A 1 38 LYS 38 68 ? ? ? A . n A 1 39 MET 39 69 ? ? ? A . n A 1 40 PRO 40 70 ? ? ? A . n A 1 41 ALA 41 71 ? ? ? A . n A 1 42 LEU 42 72 ? ? ? A . n A 1 43 SER 43 73 ? ? ? A . n A 1 44 PRO 44 74 ? ? ? A . n A 1 45 THR 45 75 ? ? ? A . n A 1 46 MET 46 76 ? ? ? A . n A 1 47 THR 47 77 ? ? ? A . n A 1 48 SER 48 78 ? ? ? A . n A 1 49 GLY 49 79 ? ? ? A . n A 1 50 ASN 50 80 ? ? ? A . n A 1 51 ILE 51 81 ? ? ? A . n A 1 52 GLY 52 82 ? ? ? A . n A 1 53 ALA 53 83 ? ? ? A . n A 1 54 TRP 54 84 ? ? ? A . n A 1 55 GLN 55 85 ? ? ? A . n A 1 56 LYS 56 86 ? ? ? A . n A 1 57 LYS 57 87 ? ? ? A . n A 1 58 PRO 58 88 ? ? ? A . n A 1 59 GLY 59 89 ? ? ? A . n A 1 60 ASP 60 90 ? ? ? A . n A 1 61 ALA 61 91 ? ? ? A . n A 1 62 ILE 62 92 ? ? ? A . n A 1 63 THR 63 93 ? ? ? A . n A 1 64 PRO 64 94 ? ? ? A . n A 1 65 GLY 65 95 ? ? ? A . n A 1 66 GLU 66 96 ? ? ? A . n A 1 67 VAL 67 97 ? ? ? A . n A 1 68 LEU 68 98 ? ? ? A . n A 1 69 VAL 69 99 ? ? ? A . n A 1 70 GLU 70 100 ? ? ? A . n A 1 71 ILE 71 101 ? ? ? A . n A 1 72 GLU 72 102 ? ? ? A . n A 1 73 THR 73 103 ? ? ? A . n A 1 74 ASP 74 104 ? ? ? A . n A 1 75 LYS 75 105 ? ? ? A . n A 1 76 ALA 76 106 ? ? ? A . n A 1 77 GLN 77 107 ? ? ? A . n A 1 78 MET 78 108 ? ? ? A . n A 1 79 ASP 79 109 ? ? ? A . n A 1 80 PHE 80 110 ? ? ? A . n A 1 81 GLU 81 111 ? ? ? A . n A 1 82 PHE 82 112 ? ? ? A . n A 1 83 GLN 83 113 ? ? ? A . n A 1 84 GLU 84 114 ? ? ? A . n A 1 85 GLU 85 115 ? ? ? A . n A 1 86 GLY 86 116 ? ? ? A . n A 1 87 VAL 87 117 ? ? ? A . n A 1 88 LEU 88 118 ? ? ? A . n A 1 89 ALA 89 119 ? ? ? A . n A 1 90 LYS 90 120 ? ? ? A . n A 1 91 ILE 91 121 ? ? ? A . n A 1 92 LEU 92 122 ? ? ? A . n A 1 93 LYS 93 123 ? ? ? A . n A 1 94 GLU 94 124 ? ? ? A . n A 1 95 THR 95 125 ? ? ? A . n A 1 96 GLY 96 126 ? ? ? A . n A 1 97 GLU 97 127 ? ? ? A . n A 1 98 LYS 98 128 ? ? ? A . n A 1 99 ASP 99 129 ? ? ? A . n A 1 100 VAL 100 130 ? ? ? A . n A 1 101 ALA 101 131 ? ? ? A . n A 1 102 VAL 102 132 ? ? ? A . n A 1 103 GLY 103 133 ? ? ? A . n A 1 104 SER 104 134 ? ? ? A . n A 1 105 PRO 105 135 ? ? ? A . n A 1 106 ILE 106 136 ? ? ? A . n A 1 107 ALA 107 137 ? ? ? A . n A 1 108 VAL 108 138 ? ? ? A . n A 1 109 LEU 109 139 ? ? ? A . n A 1 110 VAL 110 140 ? ? ? A . n A 1 111 GLU 111 141 ? ? ? A . n A 1 112 GLU 112 142 ? ? ? A . n A 1 113 GLY 113 143 ? ? ? A . n A 1 114 THR 114 144 ? ? ? A . n A 1 115 ASP 115 145 ? ? ? A . n A 1 116 ILE 116 146 ? ? ? A . n A 1 117 ASN 117 147 ? ? ? A . n A 1 118 ALA 118 148 ? ? ? A . n A 1 119 PHE 119 149 ? ? ? A . n A 1 120 GLN 120 150 ? ? ? A . n A 1 121 ASN 121 151 ? ? ? A . n A 1 122 PHE 122 152 ? ? ? A . n A 1 123 THR 123 153 ? ? ? A . n A 1 124 LEU 124 154 ? ? ? A . n A 1 125 GLU 125 155 ? ? ? A . n A 1 126 ASP 126 156 ? ? ? A . n A 1 127 ALA 127 157 ? ? ? A . n A 1 128 GLY 128 158 ? ? ? A . n A 1 129 GLY 129 159 ? ? ? A . n A 1 130 ASP 130 160 ? ? ? A . n A 1 131 ALA 131 161 ? ? ? A . n A 1 132 ALA 132 162 ? ? ? A . n A 1 133 ALA 133 163 ? ? ? A . n A 1 134 PRO 134 164 ? ? ? A . n A 1 135 ALA 135 165 ? ? ? A . n A 1 136 ALA 136 166 ? ? ? A . n A 1 137 PRO 137 167 ? ? ? A . n A 1 138 ALA 138 168 ? ? ? A . n A 1 139 LYS 139 169 ? ? ? A . n A 1 140 GLU 140 170 ? ? ? A . n A 1 141 GLU 141 171 ? ? ? A . n A 1 142 LEU 142 172 ? ? ? A . n A 1 143 ALA 143 173 ? ? ? A . n A 1 144 LYS 144 174 ? ? ? A . n A 1 145 ALA 145 175 ? ? ? A . n A 1 146 GLU 146 176 ? ? ? A . n A 1 147 THR 147 177 ? ? ? A . n A 1 148 ALA 148 178 ? ? ? A . n A 1 149 PRO 149 179 ? ? ? A . n A 1 150 THR 150 180 ? ? ? A . n A 1 151 PRO 151 181 ? ? ? A . n A 1 152 ALA 152 182 ? ? ? A . n A 1 153 SER 153 183 ? ? ? A . n A 1 154 THR 154 184 ? ? ? A . n A 1 155 SER 155 185 ? ? ? A . n A 1 156 ALA 156 186 ? ? ? A . n A 1 157 PRO 157 187 ? ? ? A . n A 1 158 GLU 158 188 ? ? ? A . n A 1 159 PRO 159 189 ? ? ? A . n A 1 160 GLU 160 190 ? ? ? A . n A 1 161 GLU 161 191 ? ? ? A . n A 1 162 THR 162 192 ? ? ? A . n A 1 163 THR 163 193 ? ? ? A . n A 1 164 SER 164 194 ? ? ? A . n A 1 165 THR 165 195 ? ? ? A . n A 1 166 GLY 166 196 ? ? ? A . n A 1 167 LYS 167 197 ? ? ? A . n A 1 168 LEU 168 198 ? ? ? A . n A 1 169 GLU 169 199 ? ? ? A . n A 1 170 PRO 170 200 ? ? ? A . n A 1 171 ALA 171 201 ? ? ? A . n A 1 172 LEU 172 202 ? ? ? A . n A 1 173 ASP 173 203 ? ? ? A . n A 1 174 ARG 174 204 ? ? ? A . n A 1 175 GLU 175 205 ? ? ? A . n A 1 176 PRO 176 206 ? ? ? A . n A 1 177 ASN 177 207 ? ? ? A . n A 1 178 VAL 178 208 ? ? ? A . n A 1 179 SER 179 209 ? ? ? A . n A 1 180 PHE 180 210 ? ? ? A . n A 1 181 ALA 181 211 ? ? ? A . n A 1 182 ALA 182 212 ? ? ? A . n A 1 183 LYS 183 213 ? ? ? A . n A 1 184 LYS 184 214 ? ? ? A . n A 1 185 LEU 185 215 ? ? ? A . n A 1 186 ALA 186 216 ? ? ? A . n A 1 187 HIS 187 217 ? ? ? A . n A 1 188 GLU 188 218 ? ? ? A . n A 1 189 LEU 189 219 ? ? ? A . n A 1 190 ASP 190 220 ? ? ? A . n A 1 191 VAL 191 221 ? ? ? A . n A 1 192 PRO 192 222 ? ? ? A . n A 1 193 LEU 193 223 ? ? ? A . n A 1 194 LYS 194 224 ? ? ? A . n A 1 195 ALA 195 225 ? ? ? A . n A 1 196 LEU 196 226 ? ? ? A . n A 1 197 LYS 197 227 ? ? ? A . n A 1 198 GLY 198 228 ? ? ? A . n A 1 199 THR 199 229 ? ? ? A . n A 1 200 GLY 200 230 ? ? ? A . n A 1 201 PRO 201 231 ? ? ? A . n A 1 202 GLY 202 232 ? ? ? A . n A 1 203 GLY 203 233 ? ? ? A . n A 1 204 LYS 204 234 ? ? ? A . n A 1 205 ILE 205 235 ? ? ? A . n A 1 206 THR 206 236 ? ? ? A . n A 1 207 GLU 207 237 ? ? ? A . n A 1 208 GLU 208 238 ? ? ? A . n A 1 209 ASP 209 239 ? ? ? A . n A 1 210 VAL 210 240 ? ? ? A . n A 1 211 LYS 211 241 ? ? ? A . n A 1 212 LYS 212 242 ? ? ? A . n A 1 213 ALA 213 243 ? ? ? A . n A 1 214 ALA 214 244 ? ? ? A . n A 1 215 SER 215 245 ? ? ? A . n A 1 216 ALA 216 246 ? ? ? A . n A 1 217 PRO 217 247 ? ? ? A . n A 1 218 ALA 218 248 ? ? ? A . n A 1 219 ALA 219 249 ? ? ? A . n A 1 220 ALA 220 250 ? ? ? A . n A 1 221 ALA 221 251 ? ? ? A . n A 1 222 ALA 222 252 ? ? ? A . n A 1 223 ALA 223 253 ? ? ? A . n A 1 224 PRO 224 254 ? ? ? A . n A 1 225 GLY 225 255 ? ? ? A . n A 1 226 ALA 226 256 ? ? ? A . n A 1 227 ALA 227 257 ? ? ? A . n A 1 228 TYR 228 258 ? ? ? A . n A 1 229 GLN 229 259 ? ? ? A . n A 1 230 ASP 230 260 ? ? ? A . n A 1 231 ILE 231 261 ? ? ? A . n A 1 232 PRO 232 262 ? ? ? A . n A 1 233 ILE 233 263 ? ? ? A . n A 1 234 SER 234 264 ? ? ? A . n A 1 235 ASN 235 265 ? ? ? A . n A 1 236 MET 236 266 ? ? ? A . n A 1 237 ARG 237 267 ? ? ? A . n A 1 238 LYS 238 268 ? ? ? A . n A 1 239 THR 239 269 ? ? ? A . n A 1 240 ILE 240 270 ? ? ? A . n A 1 241 ALA 241 271 ? ? ? A . n A 1 242 THR 242 272 ? ? ? A . n A 1 243 ARG 243 273 ? ? ? A . n A 1 244 LEU 244 274 ? ? ? A . n A 1 245 LYS 245 275 ? ? ? A . n A 1 246 GLU 246 276 ? ? ? A . n A 1 247 SER 247 277 ? ? ? A . n A 1 248 VAL 248 278 ? ? ? A . n A 1 249 SER 249 279 ? ? ? A . n A 1 250 GLU 250 280 ? ? ? A . n A 1 251 ASN 251 281 ? ? ? A . n A 1 252 PRO 252 282 282 PRO PRO A . n A 1 253 HIS 253 283 283 HIS HIS A . n A 1 254 PHE 254 284 284 PHE PHE A . n A 1 255 PHE 255 285 285 PHE PHE A . n A 1 256 VAL 256 286 286 VAL VAL A . n A 1 257 THR 257 287 287 THR THR A . n A 1 258 SER 258 288 288 SER SER A . n A 1 259 GLU 259 289 289 GLU GLU A . n A 1 260 LEU 260 290 290 LEU LEU A . n A 1 261 SER 261 291 291 SER SER A . n A 1 262 VAL 262 292 292 VAL VAL A . n A 1 263 SER 263 293 293 SER SER A . n A 1 264 LYS 264 294 294 LYS LYS A . n A 1 265 LEU 265 295 295 LEU LEU A . n A 1 266 LEU 266 296 296 LEU LEU A . n A 1 267 LYS 267 297 297 LYS LYS A . n A 1 268 LEU 268 298 298 LEU LEU A . n A 1 269 ARG 269 299 299 ARG ARG A . n A 1 270 GLN 270 300 300 GLN GLN A . n A 1 271 ALA 271 301 301 ALA ALA A . n A 1 272 LEU 272 302 302 LEU LEU A . n A 1 273 ASN 273 303 303 ASN ASN A . n A 1 274 SER 274 304 304 SER SER A . n A 1 275 SER 275 305 305 SER SER A . n A 1 276 ALA 276 306 306 ALA ALA A . n A 1 277 GLU 277 307 307 GLU GLU A . n A 1 278 GLY 278 308 308 GLY GLY A . n A 1 279 ARG 279 309 309 ARG ARG A . n A 1 280 TYR 280 310 310 TYR TYR A . n A 1 281 LYS 281 311 311 LYS LYS A . n A 1 282 LEU 282 312 312 LEU LEU A . n A 1 283 SER 283 313 313 SER SER A . n A 1 284 VAL 284 314 314 VAL VAL A . n A 1 285 ASN 285 315 315 ASN ASN A . n A 1 286 ASP 286 316 316 ASP ASP A . n A 1 287 PHE 287 317 317 PHE PHE A . n A 1 288 LEU 288 318 318 LEU LEU A . n A 1 289 ILE 289 319 319 ILE ILE A . n A 1 290 LYS 290 320 320 LYS LYS A . n A 1 291 ALA 291 321 321 ALA ALA A . n A 1 292 ILE 292 322 322 ILE ILE A . n A 1 293 ALA 293 323 323 ALA ALA A . n A 1 294 VAL 294 324 324 VAL VAL A . n A 1 295 ALA 295 325 325 ALA ALA A . n A 1 296 CYS 296 326 326 CYS CYS A . n A 1 297 LYS 297 327 327 LYS LYS A . n A 1 298 ARG 298 328 328 ARG ARG A . n A 1 299 VAL 299 329 329 VAL VAL A . n A 1 300 PRO 300 330 330 PRO PRO A . n A 1 301 ALA 301 331 331 ALA ALA A . n A 1 302 VAL 302 332 332 VAL VAL A . n A 1 303 ASN 303 333 333 ASN ASN A . n A 1 304 SER 304 334 334 SER SER A . n A 1 305 SER 305 335 335 SER SER A . n A 1 306 TRP 306 336 336 TRP TRP A . n A 1 307 ARG 307 337 337 ARG ARG A . n A 1 308 ASP 308 338 338 ASP ASP A . n A 1 309 GLY 309 339 339 GLY GLY A . n A 1 310 VAL 310 340 340 VAL VAL A . n A 1 311 ILE 311 341 341 ILE ILE A . n A 1 312 ARG 312 342 342 ARG ARG A . n A 1 313 GLN 313 343 343 GLN GLN A . n A 1 314 PHE 314 344 344 PHE PHE A . n A 1 315 ASP 315 345 345 ASP ASP A . n A 1 316 THR 316 346 346 THR THR A . n A 1 317 VAL 317 347 347 VAL VAL A . n A 1 318 ASP 318 348 348 ASP ASP A . n A 1 319 VAL 319 349 349 VAL VAL A . n A 1 320 SER 320 350 350 SER SER A . n A 1 321 VAL 321 351 351 VAL VAL A . n A 1 322 ALA 322 352 352 ALA ALA A . n A 1 323 VAL 323 353 353 VAL VAL A . n A 1 324 ALA 324 354 354 ALA ALA A . n A 1 325 THR 325 355 355 THR THR A . n A 1 326 PRO 326 356 356 PRO PRO A . n A 1 327 THR 327 357 357 THR THR A . n A 1 328 GLY 328 358 358 GLY GLY A . n A 1 329 LEU 329 359 359 LEU LEU A . n A 1 330 ILE 330 360 360 ILE ILE A . n A 1 331 THR 331 361 361 THR THR A . n A 1 332 PRO 332 362 362 PRO PRO A . n A 1 333 ILE 333 363 363 ILE ILE A . n A 1 334 VAL 334 364 364 VAL VAL A . n A 1 335 LYS 335 365 365 LYS LYS A . n A 1 336 GLY 336 366 366 GLY GLY A . n A 1 337 VAL 337 367 367 VAL VAL A . n A 1 338 GLU 338 368 368 GLU GLU A . n A 1 339 ALA 339 369 369 ALA ALA A . n A 1 340 LYS 340 370 370 LYS LYS A . n A 1 341 GLY 341 371 371 GLY GLY A . n A 1 342 LEU 342 372 372 LEU LEU A . n A 1 343 GLU 343 373 373 GLU GLU A . n A 1 344 THR 344 374 374 THR THR A . n A 1 345 ILE 345 375 375 ILE ILE A . n A 1 346 SER 346 376 376 SER SER A . n A 1 347 ALA 347 377 377 ALA ALA A . n A 1 348 THR 348 378 378 THR THR A . n A 1 349 VAL 349 379 379 VAL VAL A . n A 1 350 LYS 350 380 380 LYS LYS A . n A 1 351 GLU 351 381 381 GLU GLU A . n A 1 352 LEU 352 382 382 LEU LEU A . n A 1 353 ALA 353 383 383 ALA ALA A . n A 1 354 LYS 354 384 384 LYS LYS A . n A 1 355 LYS 355 385 385 LYS LYS A . n A 1 356 ALA 356 386 386 ALA ALA A . n A 1 357 ARG 357 387 387 ARG ARG A . n A 1 358 ASP 358 388 388 ASP ASP A . n A 1 359 GLY 359 389 389 GLY GLY A . n A 1 360 LYS 360 390 390 LYS LYS A . n A 1 361 LEU 361 391 391 LEU LEU A . n A 1 362 LYS 362 392 392 LYS LYS A . n A 1 363 PRO 363 393 393 PRO PRO A . n A 1 364 GLU 364 394 394 GLU GLU A . n A 1 365 ASP 365 395 395 ASP ASP A . n A 1 366 TYR 366 396 396 TYR TYR A . n A 1 367 GLN 367 397 397 GLN GLN A . n A 1 368 GLY 368 398 398 GLY GLY A . n A 1 369 GLY 369 399 399 GLY GLY A . n A 1 370 THR 370 400 400 THR THR A . n A 1 371 ILE 371 401 401 ILE ILE A . n A 1 372 SER 372 402 402 SER SER A . n A 1 373 ILE 373 403 403 ILE ILE A . n A 1 374 SER 374 404 404 SER SER A . n A 1 375 ASN 375 405 405 ASN ASN A . n A 1 376 MET 376 406 406 MET MET A . n A 1 377 GLY 377 407 407 GLY GLY A . n A 1 378 MET 378 408 408 MET MET A . n A 1 379 ASN 379 409 409 ASN ASN A . n A 1 380 PRO 380 410 410 PRO PRO A . n A 1 381 ALA 381 411 411 ALA ALA A . n A 1 382 VAL 382 412 412 VAL VAL A . n A 1 383 GLU 383 413 413 GLU GLU A . n A 1 384 ARG 384 414 414 ARG ARG A . n A 1 385 PHE 385 415 415 PHE PHE A . n A 1 386 THR 386 416 416 THR THR A . n A 1 387 ALA 387 417 417 ALA ALA A . n A 1 388 ILE 388 418 418 ILE ILE A . n A 1 389 ILE 389 419 419 ILE ILE A . n A 1 390 ASN 390 420 420 ASN ASN A . n A 1 391 PRO 391 421 421 PRO PRO A . n A 1 392 PRO 392 422 422 PRO PRO A . n A 1 393 GLN 393 423 423 GLN GLN A . n A 1 394 ALA 394 424 424 ALA ALA A . n A 1 395 ALA 395 425 425 ALA ALA A . n A 1 396 ILE 396 426 426 ILE ILE A . n A 1 397 LEU 397 427 427 LEU LEU A . n A 1 398 ALA 398 428 428 ALA ALA A . n A 1 399 VAL 399 429 429 VAL VAL A . n A 1 400 GLY 400 430 430 GLY GLY A . n A 1 401 THR 401 431 431 THR THR A . n A 1 402 THR 402 432 432 THR THR A . n A 1 403 LYS 403 433 433 LYS LYS A . n A 1 404 LYS 404 434 434 LYS LYS A . n A 1 405 VAL 405 435 435 VAL VAL A . n A 1 406 ALA 406 436 436 ALA ALA A . n A 1 407 VAL 407 437 437 VAL VAL A . n A 1 408 PRO 408 438 438 PRO PRO A . n A 1 409 VAL 409 439 439 VAL VAL A . n A 1 410 GLU 410 440 440 GLU GLU A . n A 1 411 ASN 411 441 441 ASN ASN A . n A 1 412 GLU 412 442 442 GLU GLU A . n A 1 413 ASP 413 443 443 ASP ASP A . n A 1 414 GLY 414 444 444 GLY GLY A . n A 1 415 THR 415 445 445 THR THR A . n A 1 416 THR 416 446 446 THR THR A . n A 1 417 GLY 417 447 447 GLY GLY A . n A 1 418 VAL 418 448 448 VAL VAL A . n A 1 419 GLU 419 449 449 GLU GLU A . n A 1 420 TRP 420 450 450 TRP TRP A . n A 1 421 ASP 421 451 451 ASP ASP A . n A 1 422 ASP 422 452 452 ASP ASP A . n A 1 423 GLN 423 453 453 GLN GLN A . n A 1 424 ILE 424 454 454 ILE ILE A . n A 1 425 VAL 425 455 455 VAL VAL A . n A 1 426 VAL 426 456 456 VAL VAL A . n A 1 427 THR 427 457 457 THR THR A . n A 1 428 ALA 428 458 458 ALA ALA A . n A 1 429 SER 429 459 459 SER SER A . n A 1 430 PHE 430 460 460 PHE PHE A . n A 1 431 ASP 431 461 461 ASP ASP A . n A 1 432 HIS 432 462 462 HIS HIS A . n A 1 433 LYS 433 463 463 LYS LYS A . n A 1 434 VAL 434 464 464 VAL VAL A . n A 1 435 VAL 435 465 465 VAL VAL A . n A 1 436 ASP 436 466 466 ASP ASP A . n A 1 437 GLY 437 467 467 GLY GLY A . n A 1 438 ALA 438 468 468 ALA ALA A . n A 1 439 VAL 439 469 469 VAL VAL A . n A 1 440 GLY 440 470 470 GLY GLY A . n A 1 441 ALA 441 471 471 ALA ALA A . n A 1 442 GLU 442 472 472 GLU GLU A . n A 1 443 TRP 443 473 473 TRP TRP A . n A 1 444 MET 444 474 474 MET MET A . n A 1 445 ARG 445 475 475 ARG ARG A . n A 1 446 GLU 446 476 476 GLU GLU A . n A 1 447 LEU 447 477 477 LEU LEU A . n A 1 448 LYS 448 478 478 LYS LYS A . n A 1 449 LYS 449 479 479 LYS LYS A . n A 1 450 VAL 450 480 480 VAL VAL A . n A 1 451 VAL 451 481 481 VAL VAL A . n A 1 452 GLU 452 482 482 GLU GLU A . n A 1 453 ASN 453 483 483 ASN ASN A . n A 1 454 PRO 454 484 484 PRO PRO A . n A 1 455 LEU 455 485 485 LEU LEU A . n A 1 456 GLU 456 486 486 GLU GLU A . n A 1 457 LEU 457 487 487 LEU LEU A . n A 1 458 LEU 458 488 488 LEU LEU A . n A 1 459 LEU 459 489 489 LEU LEU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 60-meric _pdbx_struct_assembly.oligomeric_count 60 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,10,11,12,13,14,15,16,17,18,19,2,20,21,22,23,24,25,26,27,28,29,3,30,31,32,33,34,35,36,37,38,39,4,40,41,42,43,44,45,46,47,48,49,5,50,51,52,53,54,55,56,57,58,59,6,60,7,8,9 ; _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.309018 0.499973 0.809034 -245.36958 -0.500084 0.808995 -0.308937 397.06590 -0.808964 -0.309118 0.500023 642.45989 3 'point symmetry operation' ? ? -0.809016 0.308887 0.500082 397.10076 -0.309185 0.499941 -0.808989 642.51882 -0.499898 -0.809103 -0.308957 1039.45875 4 'point symmetry operation' ? ? 0.309017 -0.499993 0.809021 151.67400 0.499949 0.809039 0.309042 -245.39412 -0.809048 0.308971 0.499978 397.09780 5 'point symmetry operation' ? ? -0.308937 -0.500077 0.809000 397.08389 -0.500105 0.808936 0.309060 151.72723 -0.808983 -0.309105 -0.500001 1039.51326 6 'point symmetry operation' ? ? -0.499837 -0.809097 0.309072 794.07307 -0.809098 0.308851 -0.499971 794.19691 0.309068 -0.499974 -0.809014 794.04925 7 'point symmetry operation' ? ? 0.000134 -1.000000 0.000117 794.01791 -0.000019 -0.000117 -1.000000 794.14753 1.000000 0.000134 -0.000019 -0.07000 8 'point symmetry operation' ? ? 0.500034 -0.808964 0.309102 396.99354 0.809016 0.309018 -0.500001 151.64374 0.308964 0.500086 0.808984 -245.39768 9 'point symmetry operation' ? ? -0.309105 -0.500004 -0.808981 1039.52767 0.500023 -0.809019 0.308973 397.05669 -0.808969 -0.309004 0.500086 642.39135 10 'point symmetry operation' ? ? 0.808962 -0.308977 -0.500114 397.10132 0.309145 -0.500001 0.808967 151.63304 -0.500010 -0.809031 -0.308963 1039.47727 11 'point symmetry operation' ? ? 0.809071 0.309093 0.499865 -245.38152 -0.308852 -0.500001 0.809079 396.97443 0.500014 -0.808987 -0.309073 642.42791 12 'point symmetry operation' ? ? -0.308929 0.500053 0.809018 -0.02939 -0.499912 -0.809018 0.309158 794.02287 0.809105 -0.308930 0.499911 -0.05092 13 'point symmetry operation' ? ? -1.000000 0.000001 0.000108 794.08885 -0.000001 -1.000000 0.000073 794.07448 0.000108 0.000073 1.000000 -0.07168 14 'point symmetry operation' ? ? 0.000138 -0.000018 1.000000 -0.02338 -1.000000 -0.000115 0.000138 794.10844 0.000115 -1.000000 -0.000018 794.05510 15 'point symmetry operation' ? ? -0.808913 -0.309065 0.500139 642.39682 -0.309071 -0.500107 -0.808930 1039.52060 0.500135 -0.808932 0.309020 396.94928 16 'point symmetry operation' ? ? -0.500001 -0.809071 -0.308875 1039.47859 0.808985 -0.309055 -0.500028 397.07374 0.309098 -0.499889 0.809054 151.56282 17 'point symmetry operation' ? ? 0.499965 -0.809041 -0.309012 642.46857 0.809049 0.309015 0.499949 -245.39005 -0.308990 -0.499962 0.809050 397.01527 18 'point symmetry operation' ? ? 0.809067 -0.309019 0.499918 0.02144 -0.308965 0.499950 0.809068 -0.00877 -0.499952 -0.809047 0.309017 794.09627 19 'point symmetry operation' ? ? -0.500097 0.808989 0.308933 151.76822 0.808990 0.309183 0.499941 -245.42975 0.308930 0.499943 -0.809086 397.11386 20 'point symmetry operation' ? ? -0.809017 0.308938 -0.500049 794.17533 -0.309059 0.500060 0.808964 0.02619 0.499974 0.809010 -0.309077 0.01695 21 'point symmetry operation' ? ? 0.000026 0.000016 -1.000000 794.09132 -1.000000 -0.000041 -0.000026 794.14395 -0.000041 1.000000 0.000016 -0.00005 22 'point symmetry operation' ? ? 0.808963 0.309149 -0.500006 151.62966 -0.308974 -0.499998 -0.809035 1039.47997 -0.500114 0.808968 -0.308961 397.08857 23 'point symmetry operation' ? ? 0.499870 0.809121 0.308955 -245.34615 0.809042 -0.308886 -0.500040 396.98890 -0.309161 0.499913 -0.809016 642.52159 24 'point symmetry operation' ? ? 0.809065 -0.308968 -0.499952 396.99231 -0.309018 0.499952 -0.809047 642.47056 0.499922 0.809065 0.309017 -245.39346 25 'point symmetry operation' ? ? 0.808966 0.309104 0.500028 -245.40909 0.308981 0.500050 -0.809000 397.02664 -0.500104 0.808953 0.309017 151.72775 26 'point symmetry operation' ? ? -0.309092 0.499956 0.809015 0.07501 0.499867 0.809096 -0.309027 0.01526 -0.809071 0.308882 -0.499997 794.17365 27 'point symmetry operation' ? ? -1.000000 -0.000160 0.000002 794.19504 -0.000160 1.000000 -0.000072 0.09229 -0.000002 -0.000072 -1.000000 794.11292 28 'point symmetry operation' ? ? -0.308974 -0.500280 -0.808860 1039.55818 -0.500305 0.808787 -0.309124 397.33186 0.808844 0.309166 -0.500187 151.70830 29 'point symmetry operation' ? ? 0.808812 0.309085 -0.500290 151.81868 0.309142 0.500225 0.808830 -245.47335 0.500255 -0.808852 0.309037 396.84216 30 'point symmetry operation' ? ? 0.500034 0.809017 0.308963 -245.37308 -0.808963 0.309018 0.500087 397.01162 0.309104 -0.500000 0.808984 151.63265 31 'point symmetry operation' ? ? -0.500001 0.808984 0.309101 151.66572 -0.809070 -0.309053 -0.499892 1039.49373 -0.308876 -0.500031 0.809052 396.99649 32 'point symmetry operation' ? ? -0.809122 0.308930 -0.499884 794.15450 0.308929 -0.500009 -0.809045 794.14054 -0.499885 -0.809044 0.309131 794.02382 33 'point symmetry operation' ? ? -0.000139 -0.000091 -1.000000 794.19932 1.000000 0.000042 -0.000139 0.02397 0.000042 -1.000000 0.000091 794.04077 34 'point symmetry operation' ? ? -0.000133 1.000000 0.000044 0.04970 -0.000094 0.000044 -1.000000 794.11306 -1.000000 -0.000133 0.000094 794.12337 35 'point symmetry operation' ? ? -0.500161 0.808915 -0.309022 397.17652 0.808916 0.309110 -0.500106 151.68897 -0.309022 -0.500106 -0.808949 1039.49819 36 'point symmetry operation' ? ? -0.309098 0.499865 -0.809070 642.56078 0.499957 0.809097 0.308877 -245.35476 0.809013 -0.309027 -0.500001 397.03110 37 'point symmetry operation' ? ? 0.309016 0.499948 -0.809050 397.08774 -0.499991 0.809040 0.308971 151.67593 0.809023 0.309041 0.499976 -245.41007 38 'point symmetry operation' ? ? 0.499967 0.809048 -0.308990 -0.00551 -0.809040 0.309018 -0.499962 794.10354 -0.309009 0.499950 0.809051 0.00600 39 'point symmetry operation' ? ? -0.308927 -0.499914 0.809105 396.97351 0.500053 -0.809016 -0.308932 642.37764 0.809019 0.309158 0.499910 -245.42910 40 'point symmetry operation' ? ? -0.500000 -0.808993 0.309080 794.09311 0.809018 -0.308980 0.500021 -0.03059 -0.309014 0.500062 0.808980 -0.00882 41 'point symmetry operation' ? ? 0.000023 -1.000000 -0.000041 794.12488 0.000018 -0.000041 1.000000 0.01893 -1.000000 -0.000023 0.000018 794.11000 42 'point symmetry operation' ? ? 0.500128 -0.808969 0.308935 397.02461 -0.808937 -0.309146 0.500049 642.45953 -0.309018 -0.499998 -0.809018 1039.48118 43 'point symmetry operation' ? ? 0.309185 -0.499898 0.809016 151.57108 -0.499898 -0.809120 -0.308914 1039.45786 0.809016 -0.308914 -0.500066 397.01083 44 'point symmetry operation' ? ? -0.499904 -0.809066 -0.309043 1039.50513 -0.809065 0.308923 0.499980 397.13256 -0.309046 0.499978 -0.809019 642.45141 45 'point symmetry operation' ? ? 0.500130 -0.808935 -0.309021 642.36423 -0.808968 -0.309145 -0.500001 1039.53278 0.308936 0.500053 -0.809015 397.03970 46 'point symmetry operation' ? ? 0.809072 -0.308851 0.500013 -0.08528 0.309095 -0.499998 -0.808988 794.04773 0.499863 0.809081 -0.309070 0.03006 47 'point symmetry operation' ? ? -0.000026 0.000092 1.000000 -0.00218 1.000000 0.000115 0.000026 -0.07021 -0.000115 1.000000 -0.000092 0.07243 48 'point symmetry operation' ? ? -0.809018 -0.309058 0.499974 642.50088 0.308939 0.500059 0.809011 -245.37760 -0.500047 0.808965 -0.309076 397.10876 49 'point symmetry operation' ? ? -0.500000 0.809018 -0.309014 397.06872 -0.808993 -0.308980 0.500061 642.41096 0.309080 0.500021 0.808980 -245.41627 50 'point symmetry operation' ? ? -0.309105 0.500025 -0.808968 642.45938 -0.500009 -0.809017 -0.309003 1039.49691 -0.808978 0.308977 0.500088 397.02362 51 'point symmetry operation' ? ? 0.308850 0.500043 -0.809054 397.11772 0.500043 -0.808960 -0.309098 642.42509 -0.809055 -0.309097 -0.499890 1039.49442 52 'point symmetry operation' ? ? 0.499871 0.809043 -0.309159 0.10202 0.809121 -0.308888 0.499910 -0.06395 0.308953 -0.500038 -0.809018 794.12193 53 'point symmetry operation' ? ? -0.000022 1.000000 -0.000117 0.06969 0.000091 0.000117 1.000000 -0.07309 1.000000 0.000022 -0.000091 0.00346 54 'point symmetry operation' ? ? 1.000000 0.000159 -0.000110 -0.01955 0.000159 -1.000000 -0.000001 794.04002 -0.000110 0.000000 -1.000000 794.12723 55 'point symmetry operation' ? ? 0.309026 0.500134 0.808931 -245.39585 0.500136 -0.808915 0.309063 396.93423 0.808929 0.309067 -0.500111 151.69283 56 'point symmetry operation' ? ? -0.809012 0.309055 0.499985 397.07160 0.309056 -0.499890 0.809070 151.58336 0.499984 0.809071 0.308902 -245.37476 57 'point symmetry operation' ? ? -0.809022 -0.309015 -0.499992 1039.51434 -0.309015 -0.499992 0.809023 397.05769 -0.499993 0.809023 0.309014 151.65691 58 'point symmetry operation' ? ? 0.308970 -0.499968 -0.809055 794.13156 -0.499694 -0.809139 0.309192 793.97464 -0.809224 0.308749 -0.499831 794.25187 59 'point symmetry operation' ? ? -0.809041 -0.309425 -0.499708 1039.59957 0.308633 0.499897 -0.809227 397.32540 0.500198 -0.808925 -0.308939 642.26694 60 'point symmetry operation' ? ? 0.309017 -0.500086 -0.808964 794.11830 0.499972 0.808995 -0.309121 0.05092 0.809034 -0.308935 0.500022 -0.06492 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-02-10 2 'Structure model' 1 1 2021-02-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? phenix.real_space_refine ? ? ? 1.18_3845 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18_3845 2 # _em_3d_fitting.entry_id 7BGJ _em_3d_fitting.id 1 _em_3d_fitting.details ;The initial model was used to generate our model using MODELLER. This inital model was fitted into the density using ChimeraX and refined in real space using PHENIX. ; _em_3d_fitting.overall_b_value 103.25 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 444-647 _em_3d_fitting_list.pdb_entry_id 6CT0 # _em_3d_reconstruction.entry_id 7BGJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'SIMULTANEOUS ITERATIVE (SIRT)' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 29516 _em_3d_reconstruction.resolution 6.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Native 60-mer core of Pyruvate Dehydrogenase Complex' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7BGJ _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification 44067 _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_magnification 45000 _em_imaging.recording_temperature_maximum 103.15 _em_imaging.recording_temperature_minimum 77.15 _em_imaging.residual_tilt 14.7 _em_imaging.specimen_holder_model OTHER _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'For plunging, blot force 2 and blotting time of 6 sec were applied.' _em_vitrification.humidity 95 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7BGJ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7BGJ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7BGJ _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 290 ? ? -162.13 115.97 2 1 THR A 361 ? ? -113.77 74.53 3 1 THR A 400 ? ? 63.76 -21.86 4 1 ALA A 411 ? ? 61.95 -0.88 5 1 ASN A 441 ? ? -36.75 124.40 6 1 HIS A 462 ? ? 74.89 -9.92 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 31 ? A MET 1 2 1 Y 1 A LEU 32 ? A LEU 2 3 1 Y 1 A ALA 33 ? A ALA 3 4 1 Y 1 A GLN 34 ? A GLN 4 5 1 Y 1 A VAL 35 ? A VAL 5 6 1 Y 1 A LEU 36 ? A LEU 6 7 1 Y 1 A ARG 37 ? A ARG 7 8 1 Y 1 A ARG 38 ? A ARG 8 9 1 Y 1 A GLN 39 ? A GLN 9 10 1 Y 1 A ALA 40 ? A ALA 10 11 1 Y 1 A LEU 41 ? A LEU 11 12 1 Y 1 A GLN 42 ? A GLN 12 13 1 Y 1 A HIS 43 ? A HIS 13 14 1 Y 1 A VAL 44 ? A VAL 14 15 1 Y 1 A ARG 45 ? A ARG 15 16 1 Y 1 A LEU 46 ? A LEU 16 17 1 Y 1 A ALA 47 ? A ALA 17 18 1 Y 1 A ARG 48 ? A ARG 18 19 1 Y 1 A ALA 49 ? A ALA 19 20 1 Y 1 A ALA 50 ? A ALA 20 21 1 Y 1 A ALA 51 ? A ALA 21 22 1 Y 1 A PRO 52 ? A PRO 22 23 1 Y 1 A SER 53 ? A SER 23 24 1 Y 1 A LEU 54 ? A LEU 24 25 1 Y 1 A THR 55 ? A THR 25 26 1 Y 1 A ARG 56 ? A ARG 26 27 1 Y 1 A TRP 57 ? A TRP 27 28 1 Y 1 A TYR 58 ? A TYR 28 29 1 Y 1 A ALA 59 ? A ALA 29 30 1 Y 1 A SER 60 ? A SER 30 31 1 Y 1 A TYR 61 ? A TYR 31 32 1 Y 1 A PRO 62 ? A PRO 32 33 1 Y 1 A PRO 63 ? A PRO 33 34 1 Y 1 A HIS 64 ? A HIS 34 35 1 Y 1 A THR 65 ? A THR 35 36 1 Y 1 A ILE 66 ? A ILE 36 37 1 Y 1 A VAL 67 ? A VAL 37 38 1 Y 1 A LYS 68 ? A LYS 38 39 1 Y 1 A MET 69 ? A MET 39 40 1 Y 1 A PRO 70 ? A PRO 40 41 1 Y 1 A ALA 71 ? A ALA 41 42 1 Y 1 A LEU 72 ? A LEU 42 43 1 Y 1 A SER 73 ? A SER 43 44 1 Y 1 A PRO 74 ? A PRO 44 45 1 Y 1 A THR 75 ? A THR 45 46 1 Y 1 A MET 76 ? A MET 46 47 1 Y 1 A THR 77 ? A THR 47 48 1 Y 1 A SER 78 ? A SER 48 49 1 Y 1 A GLY 79 ? A GLY 49 50 1 Y 1 A ASN 80 ? A ASN 50 51 1 Y 1 A ILE 81 ? A ILE 51 52 1 Y 1 A GLY 82 ? A GLY 52 53 1 Y 1 A ALA 83 ? A ALA 53 54 1 Y 1 A TRP 84 ? A TRP 54 55 1 Y 1 A GLN 85 ? A GLN 55 56 1 Y 1 A LYS 86 ? A LYS 56 57 1 Y 1 A LYS 87 ? A LYS 57 58 1 Y 1 A PRO 88 ? A PRO 58 59 1 Y 1 A GLY 89 ? A GLY 59 60 1 Y 1 A ASP 90 ? A ASP 60 61 1 Y 1 A ALA 91 ? A ALA 61 62 1 Y 1 A ILE 92 ? A ILE 62 63 1 Y 1 A THR 93 ? A THR 63 64 1 Y 1 A PRO 94 ? A PRO 64 65 1 Y 1 A GLY 95 ? A GLY 65 66 1 Y 1 A GLU 96 ? A GLU 66 67 1 Y 1 A VAL 97 ? A VAL 67 68 1 Y 1 A LEU 98 ? A LEU 68 69 1 Y 1 A VAL 99 ? A VAL 69 70 1 Y 1 A GLU 100 ? A GLU 70 71 1 Y 1 A ILE 101 ? A ILE 71 72 1 Y 1 A GLU 102 ? A GLU 72 73 1 Y 1 A THR 103 ? A THR 73 74 1 Y 1 A ASP 104 ? A ASP 74 75 1 Y 1 A LYS 105 ? A LYS 75 76 1 Y 1 A ALA 106 ? A ALA 76 77 1 Y 1 A GLN 107 ? A GLN 77 78 1 Y 1 A MET 108 ? A MET 78 79 1 Y 1 A ASP 109 ? A ASP 79 80 1 Y 1 A PHE 110 ? A PHE 80 81 1 Y 1 A GLU 111 ? A GLU 81 82 1 Y 1 A PHE 112 ? A PHE 82 83 1 Y 1 A GLN 113 ? A GLN 83 84 1 Y 1 A GLU 114 ? A GLU 84 85 1 Y 1 A GLU 115 ? A GLU 85 86 1 Y 1 A GLY 116 ? A GLY 86 87 1 Y 1 A VAL 117 ? A VAL 87 88 1 Y 1 A LEU 118 ? A LEU 88 89 1 Y 1 A ALA 119 ? A ALA 89 90 1 Y 1 A LYS 120 ? A LYS 90 91 1 Y 1 A ILE 121 ? A ILE 91 92 1 Y 1 A LEU 122 ? A LEU 92 93 1 Y 1 A LYS 123 ? A LYS 93 94 1 Y 1 A GLU 124 ? A GLU 94 95 1 Y 1 A THR 125 ? A THR 95 96 1 Y 1 A GLY 126 ? A GLY 96 97 1 Y 1 A GLU 127 ? A GLU 97 98 1 Y 1 A LYS 128 ? A LYS 98 99 1 Y 1 A ASP 129 ? A ASP 99 100 1 Y 1 A VAL 130 ? A VAL 100 101 1 Y 1 A ALA 131 ? A ALA 101 102 1 Y 1 A VAL 132 ? A VAL 102 103 1 Y 1 A GLY 133 ? A GLY 103 104 1 Y 1 A SER 134 ? A SER 104 105 1 Y 1 A PRO 135 ? A PRO 105 106 1 Y 1 A ILE 136 ? A ILE 106 107 1 Y 1 A ALA 137 ? A ALA 107 108 1 Y 1 A VAL 138 ? A VAL 108 109 1 Y 1 A LEU 139 ? A LEU 109 110 1 Y 1 A VAL 140 ? A VAL 110 111 1 Y 1 A GLU 141 ? A GLU 111 112 1 Y 1 A GLU 142 ? A GLU 112 113 1 Y 1 A GLY 143 ? A GLY 113 114 1 Y 1 A THR 144 ? A THR 114 115 1 Y 1 A ASP 145 ? A ASP 115 116 1 Y 1 A ILE 146 ? A ILE 116 117 1 Y 1 A ASN 147 ? A ASN 117 118 1 Y 1 A ALA 148 ? A ALA 118 119 1 Y 1 A PHE 149 ? A PHE 119 120 1 Y 1 A GLN 150 ? A GLN 120 121 1 Y 1 A ASN 151 ? A ASN 121 122 1 Y 1 A PHE 152 ? A PHE 122 123 1 Y 1 A THR 153 ? A THR 123 124 1 Y 1 A LEU 154 ? A LEU 124 125 1 Y 1 A GLU 155 ? A GLU 125 126 1 Y 1 A ASP 156 ? A ASP 126 127 1 Y 1 A ALA 157 ? A ALA 127 128 1 Y 1 A GLY 158 ? A GLY 128 129 1 Y 1 A GLY 159 ? A GLY 129 130 1 Y 1 A ASP 160 ? A ASP 130 131 1 Y 1 A ALA 161 ? A ALA 131 132 1 Y 1 A ALA 162 ? A ALA 132 133 1 Y 1 A ALA 163 ? A ALA 133 134 1 Y 1 A PRO 164 ? A PRO 134 135 1 Y 1 A ALA 165 ? A ALA 135 136 1 Y 1 A ALA 166 ? A ALA 136 137 1 Y 1 A PRO 167 ? A PRO 137 138 1 Y 1 A ALA 168 ? A ALA 138 139 1 Y 1 A LYS 169 ? A LYS 139 140 1 Y 1 A GLU 170 ? A GLU 140 141 1 Y 1 A GLU 171 ? A GLU 141 142 1 Y 1 A LEU 172 ? A LEU 142 143 1 Y 1 A ALA 173 ? A ALA 143 144 1 Y 1 A LYS 174 ? A LYS 144 145 1 Y 1 A ALA 175 ? A ALA 145 146 1 Y 1 A GLU 176 ? A GLU 146 147 1 Y 1 A THR 177 ? A THR 147 148 1 Y 1 A ALA 178 ? A ALA 148 149 1 Y 1 A PRO 179 ? A PRO 149 150 1 Y 1 A THR 180 ? A THR 150 151 1 Y 1 A PRO 181 ? A PRO 151 152 1 Y 1 A ALA 182 ? A ALA 152 153 1 Y 1 A SER 183 ? A SER 153 154 1 Y 1 A THR 184 ? A THR 154 155 1 Y 1 A SER 185 ? A SER 155 156 1 Y 1 A ALA 186 ? A ALA 156 157 1 Y 1 A PRO 187 ? A PRO 157 158 1 Y 1 A GLU 188 ? A GLU 158 159 1 Y 1 A PRO 189 ? A PRO 159 160 1 Y 1 A GLU 190 ? A GLU 160 161 1 Y 1 A GLU 191 ? A GLU 161 162 1 Y 1 A THR 192 ? A THR 162 163 1 Y 1 A THR 193 ? A THR 163 164 1 Y 1 A SER 194 ? A SER 164 165 1 Y 1 A THR 195 ? A THR 165 166 1 Y 1 A GLY 196 ? A GLY 166 167 1 Y 1 A LYS 197 ? A LYS 167 168 1 Y 1 A LEU 198 ? A LEU 168 169 1 Y 1 A GLU 199 ? A GLU 169 170 1 Y 1 A PRO 200 ? A PRO 170 171 1 Y 1 A ALA 201 ? A ALA 171 172 1 Y 1 A LEU 202 ? A LEU 172 173 1 Y 1 A ASP 203 ? A ASP 173 174 1 Y 1 A ARG 204 ? A ARG 174 175 1 Y 1 A GLU 205 ? A GLU 175 176 1 Y 1 A PRO 206 ? A PRO 176 177 1 Y 1 A ASN 207 ? A ASN 177 178 1 Y 1 A VAL 208 ? A VAL 178 179 1 Y 1 A SER 209 ? A SER 179 180 1 Y 1 A PHE 210 ? A PHE 180 181 1 Y 1 A ALA 211 ? A ALA 181 182 1 Y 1 A ALA 212 ? A ALA 182 183 1 Y 1 A LYS 213 ? A LYS 183 184 1 Y 1 A LYS 214 ? A LYS 184 185 1 Y 1 A LEU 215 ? A LEU 185 186 1 Y 1 A ALA 216 ? A ALA 186 187 1 Y 1 A HIS 217 ? A HIS 187 188 1 Y 1 A GLU 218 ? A GLU 188 189 1 Y 1 A LEU 219 ? A LEU 189 190 1 Y 1 A ASP 220 ? A ASP 190 191 1 Y 1 A VAL 221 ? A VAL 191 192 1 Y 1 A PRO 222 ? A PRO 192 193 1 Y 1 A LEU 223 ? A LEU 193 194 1 Y 1 A LYS 224 ? A LYS 194 195 1 Y 1 A ALA 225 ? A ALA 195 196 1 Y 1 A LEU 226 ? A LEU 196 197 1 Y 1 A LYS 227 ? A LYS 197 198 1 Y 1 A GLY 228 ? A GLY 198 199 1 Y 1 A THR 229 ? A THR 199 200 1 Y 1 A GLY 230 ? A GLY 200 201 1 Y 1 A PRO 231 ? A PRO 201 202 1 Y 1 A GLY 232 ? A GLY 202 203 1 Y 1 A GLY 233 ? A GLY 203 204 1 Y 1 A LYS 234 ? A LYS 204 205 1 Y 1 A ILE 235 ? A ILE 205 206 1 Y 1 A THR 236 ? A THR 206 207 1 Y 1 A GLU 237 ? A GLU 207 208 1 Y 1 A GLU 238 ? A GLU 208 209 1 Y 1 A ASP 239 ? A ASP 209 210 1 Y 1 A VAL 240 ? A VAL 210 211 1 Y 1 A LYS 241 ? A LYS 211 212 1 Y 1 A LYS 242 ? A LYS 212 213 1 Y 1 A ALA 243 ? A ALA 213 214 1 Y 1 A ALA 244 ? A ALA 214 215 1 Y 1 A SER 245 ? A SER 215 216 1 Y 1 A ALA 246 ? A ALA 216 217 1 Y 1 A PRO 247 ? A PRO 217 218 1 Y 1 A ALA 248 ? A ALA 218 219 1 Y 1 A ALA 249 ? A ALA 219 220 1 Y 1 A ALA 250 ? A ALA 220 221 1 Y 1 A ALA 251 ? A ALA 221 222 1 Y 1 A ALA 252 ? A ALA 222 223 1 Y 1 A ALA 253 ? A ALA 223 224 1 Y 1 A PRO 254 ? A PRO 224 225 1 Y 1 A GLY 255 ? A GLY 225 226 1 Y 1 A ALA 256 ? A ALA 226 227 1 Y 1 A ALA 257 ? A ALA 227 228 1 Y 1 A TYR 258 ? A TYR 228 229 1 Y 1 A GLN 259 ? A GLN 229 230 1 Y 1 A ASP 260 ? A ASP 230 231 1 Y 1 A ILE 261 ? A ILE 231 232 1 Y 1 A PRO 262 ? A PRO 232 233 1 Y 1 A ILE 263 ? A ILE 233 234 1 Y 1 A SER 264 ? A SER 234 235 1 Y 1 A ASN 265 ? A ASN 235 236 1 Y 1 A MET 266 ? A MET 236 237 1 Y 1 A ARG 267 ? A ARG 237 238 1 Y 1 A LYS 268 ? A LYS 238 239 1 Y 1 A THR 269 ? A THR 239 240 1 Y 1 A ILE 270 ? A ILE 240 241 1 Y 1 A ALA 271 ? A ALA 241 242 1 Y 1 A THR 272 ? A THR 242 243 1 Y 1 A ARG 273 ? A ARG 243 244 1 Y 1 A LEU 274 ? A LEU 244 245 1 Y 1 A LYS 275 ? A LYS 245 246 1 Y 1 A GLU 276 ? A GLU 246 247 1 Y 1 A SER 277 ? A SER 247 248 1 Y 1 A VAL 278 ? A VAL 248 249 1 Y 1 A SER 279 ? A SER 249 250 1 Y 1 A GLU 280 ? A GLU 250 251 1 Y 1 A ASN 281 ? A ASN 251 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration 200 _em_buffer_component.concentration_units mM _em_buffer_component.formula NH4CH2COOH _em_buffer_component.name 'Ammonium acetate' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 3 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 759272 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Chaetomium thermophilum var. thermophilum DSM 1495' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 30.0 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 2593 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Automated selection with template derived from manual selection' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 205251 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? Xmipp 3.0 1 ? ? 2 'IMAGE ACQUISITION' 'Image Collection' EPU 2.6 ? ? 1 3 'IMAGE ACQUISITION' 'Image analysis software integration' Scipion 2.0 ? ? 1 4 'IMAGE ACQUISITION' 'Particle extraction, 2D/3D classification, Model refinement' RELION 3.0 ? ? 1 5 'IMAGE ACQUISITION' 'Particle picking' Xmipp 3 ? ? 1 6 'IMAGE ACQUISITION' 'Motion correction' MotionCorr2 2.03 ? ? 1 7 'IMAGE ACQUISITION' 'CTF estimation' Gctf 1.06 ? ? 1 8 MASKING ? ? ? ? ? ? 9 'CTF CORRECTION' ? Gctf 1.06 1 ? ? 10 'LAYERLINE INDEXING' ? ? ? ? ? ? 11 'DIFFRACTION INDEXING' ? ? ? ? ? ? 12 'MODEL FITTING' 'UCSF ChimeraX' 'UCSF Chimera' 0.94 ? 1 ? 13 OTHER ? ? ? ? ? ? 14 'INITIAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 15 'FINAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 16 CLASSIFICATION ? RELION 3.0 1 ? ? 17 RECONSTRUCTION ? RELION 3.0 1 ? ? 18 'VOLUME SELECTION' ? ? ? 1 1 1 19 'SERIES ALIGNMENT' ? ? ? 1 1 1 20 'MOLECULAR REPLACEMENT' ? ? ? 1 1 1 21 'LATTICE DISTORTION CORRECTION' ? ? ? 1 1 1 22 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 23 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 24 'MODEL REFINEMENT' ? MODELLER 9.22 ? 1 ? 25 'MODEL REFINEMENT' ? PHENIX 1.18-3845 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.3 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ;We isolated the protein complex by using only the heavy fractions of a Phenomenex Biosep SEC-s4000 with an upper exlcusion limit in the MDa-range. ; 2 1 'scanning transmission electron microscopy' ;We performed Cryo-TEM on a vitrified, fractionated cell extract, where, after systematic image analysis we ended up with an Icosahedral core for the Pyruvate Dehydrogenase Complex. ; 3 1 homology ;It is known that the E2 protein of the Pyruvate Dehydrogenase Complex forms an icosahedral assembly, e.g. in the human counterpart (PDB-ID: 6ct0) ; #