HEADER TRANSFERASE 07-JAN-21 7BGJ TITLE C. THERMOPHILUM PYRUVATE DEHYDROGENASE COMPLEX CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPND 3 COMPLEX; COMPND 4 CHAIN: A; COMPND 5 EC: 2.3.1.12 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 3 1495; SOURCE 4 ORGANISM_TAXID: 759272 KEYWDS DIHYDROLIPOYL, TRANSACETYLASE, E2, PYRUVATE, TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR C.TUETING,P.L.KASTRITIS REVDAT 3 01-MAY-24 7BGJ 1 REMARK DBREF HELIX SHEET REVDAT 3 2 1 ATOM REVDAT 2 17-FEB-21 7BGJ 1 JRNL REVDAT 1 10-FEB-21 7BGJ 0 JRNL AUTH F.L.KYRILIS,D.A.SEMCHONOK,I.SKALIDIS,C.TUTING,F.HAMDI, JRNL AUTH 2 F.J.O'REILLY,J.RAPPSILBER,P.L.KASTRITIS JRNL TITL INTEGRATIVE STRUCTURE OF A 10-MEGADALTON EUKARYOTIC PYRUVATE JRNL TITL 2 DEHYDROGENASE COMPLEX FROM NATIVE CELL EXTRACTS. JRNL REF CELL REP V. 34 08727 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 33567276 JRNL DOI 10.1016/J.CELREP.2021.108727 REMARK 2 REMARK 2 RESOLUTION. 6.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : XMIPP, EPU, SCIPION, RELION, XMIPP, REMARK 3 MOTIONCORR2, GCTF, GCTF, UCSF CHIMERA, REMARK 3 RELION, RELION, RELION, RELION, REMARK 3 MODELLER, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : SIMULTANEOUS ITERATIVE (SIRT) REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6CT0 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 103.250 REMARK 3 REMARK 3 FITTING PROCEDURE : THE INITIAL MODEL WAS USED TO GENERATE OUR REMARK 3 MODEL USING MODELLER. THIS INITAL MODEL WAS FITTED INTO THE REMARK 3 DENSITY USING CHIMERAX AND REFINED IN REAL SPACE USING PHENIX. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.900 REMARK 3 NUMBER OF PARTICLES : 29516 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7BGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292108907. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NATIVE 60-MER CORE OF PYRUVATE REMARK 245 DEHYDROGENASE COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.30 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : FOR PLUNGING, BLOT FORCE 2 AND REMARK 245 BLOTTING TIME OF 6 SEC WERE REMARK 245 APPLIED. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2593 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : 45000 REMARK 245 CALIBRATED MAGNIFICATION : 44067 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.808962 -0.308977 -0.500114 397.10132 REMARK 350 BIOMT2 2 0.309145 -0.500001 0.808967 151.63304 REMARK 350 BIOMT3 2 -0.500010 -0.809031 -0.308963 1039.47727 REMARK 350 BIOMT1 3 0.809071 0.309093 0.499865 -245.38152 REMARK 350 BIOMT2 3 -0.308852 -0.500001 0.809079 396.97443 REMARK 350 BIOMT3 3 0.500014 -0.808987 -0.309073 642.42791 REMARK 350 BIOMT1 4 -0.308929 0.500053 0.809018 -0.02939 REMARK 350 BIOMT2 4 -0.499912 -0.809018 0.309158 794.02287 REMARK 350 BIOMT3 4 0.809105 -0.308930 0.499911 -0.05092 REMARK 350 BIOMT1 5 -1.000000 0.000001 0.000108 794.08885 REMARK 350 BIOMT2 5 -0.000001 -1.000000 0.000073 794.07448 REMARK 350 BIOMT3 5 0.000108 0.000073 1.000000 -0.07168 REMARK 350 BIOMT1 6 0.000138 -0.000018 1.000000 -0.02338 REMARK 350 BIOMT2 6 -1.000000 -0.000115 0.000138 794.10844 REMARK 350 BIOMT3 6 0.000115 -1.000000 -0.000018 794.05510 REMARK 350 BIOMT1 7 -0.808913 -0.309065 0.500139 642.39682 REMARK 350 BIOMT2 7 -0.309071 -0.500107 -0.808930 1039.52060 REMARK 350 BIOMT3 7 0.500135 -0.808932 0.309020 396.94928 REMARK 350 BIOMT1 8 -0.500001 -0.809071 -0.308875 1039.47859 REMARK 350 BIOMT2 8 0.808985 -0.309055 -0.500028 397.07374 REMARK 350 BIOMT3 8 0.309098 -0.499889 0.809054 151.56282 REMARK 350 BIOMT1 9 0.499965 -0.809041 -0.309012 642.46857 REMARK 350 BIOMT2 9 0.809049 0.309015 0.499949 -245.39005 REMARK 350 BIOMT3 9 -0.308990 -0.499962 0.809050 397.01527 REMARK 350 BIOMT1 10 0.809067 -0.309019 0.499918 0.02144 REMARK 350 BIOMT2 10 -0.308965 0.499950 0.809068 -0.00877 REMARK 350 BIOMT3 10 -0.499952 -0.809047 0.309017 794.09627 REMARK 350 BIOMT1 11 -0.500097 0.808989 0.308933 151.76822 REMARK 350 BIOMT2 11 0.808990 0.309183 0.499941 -245.42975 REMARK 350 BIOMT3 11 0.308930 0.499943 -0.809086 397.11386 REMARK 350 BIOMT1 12 0.309018 0.499973 0.809034 -245.36958 REMARK 350 BIOMT2 12 -0.500084 0.808995 -0.308937 397.06590 REMARK 350 BIOMT3 12 -0.808964 -0.309118 0.500023 642.45989 REMARK 350 BIOMT1 13 -0.809017 0.308938 -0.500049 794.17533 REMARK 350 BIOMT2 13 -0.309059 0.500060 0.808964 0.02619 REMARK 350 BIOMT3 13 0.499974 0.809010 -0.309077 0.01695 REMARK 350 BIOMT1 14 0.000026 0.000016 -1.000000 794.09132 REMARK 350 BIOMT2 14 -1.000000 -0.000041 -0.000026 794.14395 REMARK 350 BIOMT3 14 -0.000041 1.000000 0.000016 -0.00005 REMARK 350 BIOMT1 15 0.808963 0.309149 -0.500006 151.62966 REMARK 350 BIOMT2 15 -0.308974 -0.499998 -0.809035 1039.47997 REMARK 350 BIOMT3 15 -0.500114 0.808968 -0.308961 397.08857 REMARK 350 BIOMT1 16 0.499870 0.809121 0.308955 -245.34615 REMARK 350 BIOMT2 16 0.809042 -0.308886 -0.500040 396.98890 REMARK 350 BIOMT3 16 -0.309161 0.499913 -0.809016 642.52159 REMARK 350 BIOMT1 17 0.809065 -0.308968 -0.499952 396.99231 REMARK 350 BIOMT2 17 -0.309018 0.499952 -0.809047 642.47056 REMARK 350 BIOMT3 17 0.499922 0.809065 0.309017 -245.39346 REMARK 350 BIOMT1 18 0.808966 0.309104 0.500028 -245.40909 REMARK 350 BIOMT2 18 0.308981 0.500050 -0.809000 397.02664 REMARK 350 BIOMT3 18 -0.500104 0.808953 0.309017 151.72775 REMARK 350 BIOMT1 19 -0.309092 0.499956 0.809015 0.07501 REMARK 350 BIOMT2 19 0.499867 0.809096 -0.309027 0.01526 REMARK 350 BIOMT3 19 -0.809071 0.308882 -0.499997 794.17365 REMARK 350 BIOMT1 20 -1.000000 -0.000160 0.000002 794.19504 REMARK 350 BIOMT2 20 -0.000160 1.000000 -0.000072 0.09229 REMARK 350 BIOMT3 20 -0.000002 -0.000072 -1.000000 794.11292 REMARK 350 BIOMT1 21 -0.308974 -0.500280 -0.808860 1039.55818 REMARK 350 BIOMT2 21 -0.500305 0.808787 -0.309124 397.33186 REMARK 350 BIOMT3 21 0.808844 0.309166 -0.500187 151.70830 REMARK 350 BIOMT1 22 0.808812 0.309085 -0.500290 151.81868 REMARK 350 BIOMT2 22 0.309142 0.500225 0.808830 -245.47335 REMARK 350 BIOMT3 22 0.500255 -0.808852 0.309037 396.84216 REMARK 350 BIOMT1 23 -0.809016 0.308887 0.500082 397.10076 REMARK 350 BIOMT2 23 -0.309185 0.499941 -0.808989 642.51882 REMARK 350 BIOMT3 23 -0.499898 -0.809103 -0.308957 1039.45875 REMARK 350 BIOMT1 24 0.500034 0.809017 0.308963 -245.37308 REMARK 350 BIOMT2 24 -0.808963 0.309018 0.500087 397.01162 REMARK 350 BIOMT3 24 0.309104 -0.500000 0.808984 151.63265 REMARK 350 BIOMT1 25 -0.500001 0.808984 0.309101 151.66572 REMARK 350 BIOMT2 25 -0.809070 -0.309053 -0.499892 1039.49373 REMARK 350 BIOMT3 25 -0.308876 -0.500031 0.809052 396.99649 REMARK 350 BIOMT1 26 -0.809122 0.308930 -0.499884 794.15450 REMARK 350 BIOMT2 26 0.308929 -0.500009 -0.809045 794.14054 REMARK 350 BIOMT3 26 -0.499885 -0.809044 0.309131 794.02382 REMARK 350 BIOMT1 27 -0.000139 -0.000091 -1.000000 794.19932 REMARK 350 BIOMT2 27 1.000000 0.000042 -0.000139 0.02397 REMARK 350 BIOMT3 27 0.000042 -1.000000 0.000091 794.04077 REMARK 350 BIOMT1 28 -0.000133 1.000000 0.000044 0.04970 REMARK 350 BIOMT2 28 -0.000094 0.000044 -1.000000 794.11306 REMARK 350 BIOMT3 28 -1.000000 -0.000133 0.000094 794.12337 REMARK 350 BIOMT1 29 -0.500161 0.808915 -0.309022 397.17652 REMARK 350 BIOMT2 29 0.808916 0.309110 -0.500106 151.68897 REMARK 350 BIOMT3 29 -0.309022 -0.500106 -0.808949 1039.49819 REMARK 350 BIOMT1 30 -0.309098 0.499865 -0.809070 642.56078 REMARK 350 BIOMT2 30 0.499957 0.809097 0.308877 -245.35476 REMARK 350 BIOMT3 30 0.809013 -0.309027 -0.500001 397.03110 REMARK 350 BIOMT1 31 0.309016 0.499948 -0.809050 397.08774 REMARK 350 BIOMT2 31 -0.499991 0.809040 0.308971 151.67593 REMARK 350 BIOMT3 31 0.809023 0.309041 0.499976 -245.41007 REMARK 350 BIOMT1 32 0.499967 0.809048 -0.308990 -0.00551 REMARK 350 BIOMT2 32 -0.809040 0.309018 -0.499962 794.10354 REMARK 350 BIOMT3 32 -0.309009 0.499950 0.809051 0.00600 REMARK 350 BIOMT1 33 -0.308927 -0.499914 0.809105 396.97351 REMARK 350 BIOMT2 33 0.500053 -0.809016 -0.308932 642.37764 REMARK 350 BIOMT3 33 0.809019 0.309158 0.499910 -245.42910 REMARK 350 BIOMT1 34 0.309017 -0.499993 0.809021 151.67400 REMARK 350 BIOMT2 34 0.499949 0.809039 0.309042 -245.39412 REMARK 350 BIOMT3 34 -0.809048 0.308971 0.499978 397.09780 REMARK 350 BIOMT1 35 -0.500000 -0.808993 0.309080 794.09311 REMARK 350 BIOMT2 35 0.809018 -0.308980 0.500021 -0.03059 REMARK 350 BIOMT3 35 -0.309014 0.500062 0.808980 -0.00882 REMARK 350 BIOMT1 36 0.000023 -1.000000 -0.000041 794.12488 REMARK 350 BIOMT2 36 0.000018 -0.000041 1.000000 0.01893 REMARK 350 BIOMT3 36 -1.000000 -0.000023 0.000018 794.11000 REMARK 350 BIOMT1 37 0.500128 -0.808969 0.308935 397.02461 REMARK 350 BIOMT2 37 -0.808937 -0.309146 0.500049 642.45953 REMARK 350 BIOMT3 37 -0.309018 -0.499998 -0.809018 1039.48118 REMARK 350 BIOMT1 38 0.309185 -0.499898 0.809016 151.57108 REMARK 350 BIOMT2 38 -0.499898 -0.809120 -0.308914 1039.45786 REMARK 350 BIOMT3 38 0.809016 -0.308914 -0.500066 397.01083 REMARK 350 BIOMT1 39 -0.499904 -0.809066 -0.309043 1039.50513 REMARK 350 BIOMT2 39 -0.809065 0.308923 0.499980 397.13256 REMARK 350 BIOMT3 39 -0.309046 0.499978 -0.809019 642.45141 REMARK 350 BIOMT1 40 0.500130 -0.808935 -0.309021 642.36423 REMARK 350 BIOMT2 40 -0.808968 -0.309145 -0.500001 1039.53278 REMARK 350 BIOMT3 40 0.308936 0.500053 -0.809015 397.03970 REMARK 350 BIOMT1 41 0.809072 -0.308851 0.500013 -0.08528 REMARK 350 BIOMT2 41 0.309095 -0.499998 -0.808988 794.04773 REMARK 350 BIOMT3 41 0.499863 0.809081 -0.309070 0.03006 REMARK 350 BIOMT1 42 -0.000026 0.000092 1.000000 -0.00218 REMARK 350 BIOMT2 42 1.000000 0.000115 0.000026 -0.07021 REMARK 350 BIOMT3 42 -0.000115 1.000000 -0.000092 0.07243 REMARK 350 BIOMT1 43 -0.809018 -0.309058 0.499974 642.50088 REMARK 350 BIOMT2 43 0.308939 0.500059 0.809011 -245.37760 REMARK 350 BIOMT3 43 -0.500047 0.808965 -0.309076 397.10876 REMARK 350 BIOMT1 44 -0.500000 0.809018 -0.309014 397.06872 REMARK 350 BIOMT2 44 -0.808993 -0.308980 0.500061 642.41096 REMARK 350 BIOMT3 44 0.309080 0.500021 0.808980 -245.41627 REMARK 350 BIOMT1 45 -0.308937 -0.500077 0.809000 397.08389 REMARK 350 BIOMT2 45 -0.500105 0.808936 0.309060 151.72723 REMARK 350 BIOMT3 45 -0.808983 -0.309105 -0.500001 1039.51326 REMARK 350 BIOMT1 46 -0.309105 0.500025 -0.808968 642.45938 REMARK 350 BIOMT2 46 -0.500009 -0.809017 -0.309003 1039.49691 REMARK 350 BIOMT3 46 -0.808978 0.308977 0.500088 397.02362 REMARK 350 BIOMT1 47 0.308850 0.500043 -0.809054 397.11772 REMARK 350 BIOMT2 47 0.500043 -0.808960 -0.309098 642.42509 REMARK 350 BIOMT3 47 -0.809055 -0.309097 -0.499890 1039.49442 REMARK 350 BIOMT1 48 0.499871 0.809043 -0.309159 0.10202 REMARK 350 BIOMT2 48 0.809121 -0.308888 0.499910 -0.06395 REMARK 350 BIOMT3 48 0.308953 -0.500038 -0.809018 794.12193 REMARK 350 BIOMT1 49 -0.000022 1.000000 -0.000117 0.06969 REMARK 350 BIOMT2 49 0.000091 0.000117 1.000000 -0.07309 REMARK 350 BIOMT3 49 1.000000 0.000022 -0.000091 0.00346 REMARK 350 BIOMT1 50 1.000000 0.000159 -0.000110 -0.01955 REMARK 350 BIOMT2 50 0.000159 -1.000000 -0.000001 794.04002 REMARK 350 BIOMT3 50 -0.000110 0.000000 -1.000000 794.12723 REMARK 350 BIOMT1 51 0.309026 0.500134 0.808931 -245.39585 REMARK 350 BIOMT2 51 0.500136 -0.808915 0.309063 396.93423 REMARK 350 BIOMT3 51 0.808929 0.309067 -0.500111 151.69283 REMARK 350 BIOMT1 52 -0.809012 0.309055 0.499985 397.07160 REMARK 350 BIOMT2 52 0.309056 -0.499890 0.809070 151.58336 REMARK 350 BIOMT3 52 0.499984 0.809071 0.308902 -245.37476 REMARK 350 BIOMT1 53 -0.809022 -0.309015 -0.499992 1039.51434 REMARK 350 BIOMT2 53 -0.309015 -0.499992 0.809023 397.05769 REMARK 350 BIOMT3 53 -0.499993 0.809023 0.309014 151.65691 REMARK 350 BIOMT1 54 0.308970 -0.499968 -0.809055 794.13156 REMARK 350 BIOMT2 54 -0.499694 -0.809139 0.309192 793.97464 REMARK 350 BIOMT3 54 -0.809224 0.308749 -0.499831 794.25187 REMARK 350 BIOMT1 55 -0.809041 -0.309425 -0.499708 1039.59957 REMARK 350 BIOMT2 55 0.308633 0.499897 -0.809227 397.32540 REMARK 350 BIOMT3 55 0.500198 -0.808925 -0.308939 642.26694 REMARK 350 BIOMT1 56 -0.499837 -0.809097 0.309072 794.07307 REMARK 350 BIOMT2 56 -0.809098 0.308851 -0.499971 794.19691 REMARK 350 BIOMT3 56 0.309068 -0.499974 -0.809014 794.04925 REMARK 350 BIOMT1 57 0.309017 -0.500086 -0.808964 794.11830 REMARK 350 BIOMT2 57 0.499972 0.808995 -0.309121 0.05092 REMARK 350 BIOMT3 57 0.809034 -0.308935 0.500022 -0.06492 REMARK 350 BIOMT1 58 0.000134 -1.000000 0.000117 794.01791 REMARK 350 BIOMT2 58 -0.000019 -0.000117 -1.000000 794.14753 REMARK 350 BIOMT3 58 1.000000 0.000134 -0.000019 -0.07000 REMARK 350 BIOMT1 59 0.500034 -0.808964 0.309102 396.99354 REMARK 350 BIOMT2 59 0.809016 0.309018 -0.500001 151.64374 REMARK 350 BIOMT3 59 0.308964 0.500086 0.808984 -245.39768 REMARK 350 BIOMT1 60 -0.309105 -0.500004 -0.808981 1039.52767 REMARK 350 BIOMT2 60 0.500023 -0.809019 0.308973 397.05669 REMARK 350 BIOMT3 60 -0.808969 -0.309004 0.500086 642.39135 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 VAL A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 GLN A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 GLN A 12 REMARK 465 HIS A 13 REMARK 465 VAL A 14 REMARK 465 ARG A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 SER A 23 REMARK 465 LEU A 24 REMARK 465 THR A 25 REMARK 465 ARG A 26 REMARK 465 TRP A 27 REMARK 465 TYR A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 TYR A 31 REMARK 465 PRO A 32 REMARK 465 PRO A 33 REMARK 465 HIS A 34 REMARK 465 THR A 35 REMARK 465 ILE A 36 REMARK 465 VAL A 37 REMARK 465 LYS A 38 REMARK 465 MET A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 LEU A 42 REMARK 465 SER A 43 REMARK 465 PRO A 44 REMARK 465 THR A 45 REMARK 465 MET A 46 REMARK 465 THR A 47 REMARK 465 SER A 48 REMARK 465 GLY A 49 REMARK 465 ASN A 50 REMARK 465 ILE A 51 REMARK 465 GLY A 52 REMARK 465 ALA A 53 REMARK 465 TRP A 54 REMARK 465 GLN A 55 REMARK 465 LYS A 56 REMARK 465 LYS A 57 REMARK 465 PRO A 58 REMARK 465 GLY A 59 REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 ILE A 62 REMARK 465 THR A 63 REMARK 465 PRO A 64 REMARK 465 GLY A 65 REMARK 465 GLU A 66 REMARK 465 VAL A 67 REMARK 465 LEU A 68 REMARK 465 VAL A 69 REMARK 465 GLU A 70 REMARK 465 ILE A 71 REMARK 465 GLU A 72 REMARK 465 THR A 73 REMARK 465 ASP A 74 REMARK 465 LYS A 75 REMARK 465 ALA A 76 REMARK 465 GLN A 77 REMARK 465 MET A 78 REMARK 465 ASP A 79 REMARK 465 PHE A 80 REMARK 465 GLU A 81 REMARK 465 PHE A 82 REMARK 465 GLN A 83 REMARK 465 GLU A 84 REMARK 465 GLU A 85 REMARK 465 GLY A 86 REMARK 465 VAL A 87 REMARK 465 LEU A 88 REMARK 465 ALA A 89 REMARK 465 LYS A 90 REMARK 465 ILE A 91 REMARK 465 LEU A 92 REMARK 465 LYS A 93 REMARK 465 GLU A 94 REMARK 465 THR A 95 REMARK 465 GLY A 96 REMARK 465 GLU A 97 REMARK 465 LYS A 98 REMARK 465 ASP A 99 REMARK 465 VAL A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 GLY A 103 REMARK 465 SER A 104 REMARK 465 PRO A 105 REMARK 465 ILE A 106 REMARK 465 ALA A 107 REMARK 465 VAL A 108 REMARK 465 LEU A 109 REMARK 465 VAL A 110 REMARK 465 GLU A 111 REMARK 465 GLU A 112 REMARK 465 GLY A 113 REMARK 465 THR A 114 REMARK 465 ASP A 115 REMARK 465 ILE A 116 REMARK 465 ASN A 117 REMARK 465 ALA A 118 REMARK 465 PHE A 119 REMARK 465 GLN A 120 REMARK 465 ASN A 121 REMARK 465 PHE A 122 REMARK 465 THR A 123 REMARK 465 LEU A 124 REMARK 465 GLU A 125 REMARK 465 ASP A 126 REMARK 465 ALA A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 ASP A 130 REMARK 465 ALA A 131 REMARK 465 ALA A 132 REMARK 465 ALA A 133 REMARK 465 PRO A 134 REMARK 465 ALA A 135 REMARK 465 ALA A 136 REMARK 465 PRO A 137 REMARK 465 ALA A 138 REMARK 465 LYS A 139 REMARK 465 GLU A 140 REMARK 465 GLU A 141 REMARK 465 LEU A 142 REMARK 465 ALA A 143 REMARK 465 LYS A 144 REMARK 465 ALA A 145 REMARK 465 GLU A 146 REMARK 465 THR A 147 REMARK 465 ALA A 148 REMARK 465 PRO A 149 REMARK 465 THR A 150 REMARK 465 PRO A 151 REMARK 465 ALA A 152 REMARK 465 SER A 153 REMARK 465 THR A 154 REMARK 465 SER A 155 REMARK 465 ALA A 156 REMARK 465 PRO A 157 REMARK 465 GLU A 158 REMARK 465 PRO A 159 REMARK 465 GLU A 160 REMARK 465 GLU A 161 REMARK 465 THR A 162 REMARK 465 THR A 163 REMARK 465 SER A 164 REMARK 465 THR A 165 REMARK 465 GLY A 166 REMARK 465 LYS A 167 REMARK 465 LEU A 168 REMARK 465 GLU A 169 REMARK 465 PRO A 170 REMARK 465 ALA A 171 REMARK 465 LEU A 172 REMARK 465 ASP A 173 REMARK 465 ARG A 174 REMARK 465 GLU A 175 REMARK 465 PRO A 176 REMARK 465 ASN A 177 REMARK 465 VAL A 178 REMARK 465 SER A 179 REMARK 465 PHE A 180 REMARK 465 ALA A 181 REMARK 465 ALA A 182 REMARK 465 LYS A 183 REMARK 465 LYS A 184 REMARK 465 LEU A 185 REMARK 465 ALA A 186 REMARK 465 HIS A 187 REMARK 465 GLU A 188 REMARK 465 LEU A 189 REMARK 465 ASP A 190 REMARK 465 VAL A 191 REMARK 465 PRO A 192 REMARK 465 LEU A 193 REMARK 465 LYS A 194 REMARK 465 ALA A 195 REMARK 465 LEU A 196 REMARK 465 LYS A 197 REMARK 465 GLY A 198 REMARK 465 THR A 199 REMARK 465 GLY A 200 REMARK 465 PRO A 201 REMARK 465 GLY A 202 REMARK 465 GLY A 203 REMARK 465 LYS A 204 REMARK 465 ILE A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 GLU A 208 REMARK 465 ASP A 209 REMARK 465 VAL A 210 REMARK 465 LYS A 211 REMARK 465 LYS A 212 REMARK 465 ALA A 213 REMARK 465 ALA A 214 REMARK 465 SER A 215 REMARK 465 ALA A 216 REMARK 465 PRO A 217 REMARK 465 ALA A 218 REMARK 465 ALA A 219 REMARK 465 ALA A 220 REMARK 465 ALA A 221 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 TYR A 228 REMARK 465 GLN A 229 REMARK 465 ASP A 230 REMARK 465 ILE A 231 REMARK 465 PRO A 232 REMARK 465 ILE A 233 REMARK 465 SER A 234 REMARK 465 ASN A 235 REMARK 465 MET A 236 REMARK 465 ARG A 237 REMARK 465 LYS A 238 REMARK 465 THR A 239 REMARK 465 ILE A 240 REMARK 465 ALA A 241 REMARK 465 THR A 242 REMARK 465 ARG A 243 REMARK 465 LEU A 244 REMARK 465 LYS A 245 REMARK 465 GLU A 246 REMARK 465 SER A 247 REMARK 465 VAL A 248 REMARK 465 SER A 249 REMARK 465 GLU A 250 REMARK 465 ASN A 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 260 115.97 -162.13 REMARK 500 THR A 331 74.53 -113.77 REMARK 500 THR A 370 -21.86 63.76 REMARK 500 ALA A 381 -0.88 61.95 REMARK 500 ASN A 411 124.40 -36.75 REMARK 500 HIS A 432 -9.92 74.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-12181 RELATED DB: EMDB REMARK 900 C. THERMOPHILUM PYRUVATE DEHYDROGENASE COMPLEX CORE DBREF 7BGJ A 1 459 UNP G0S4X6 G0S4X6_CHATD 1 459 SEQRES 1 A 459 MET LEU ALA GLN VAL LEU ARG ARG GLN ALA LEU GLN HIS SEQRES 2 A 459 VAL ARG LEU ALA ARG ALA ALA ALA PRO SER LEU THR ARG SEQRES 3 A 459 TRP TYR ALA SER TYR PRO PRO HIS THR ILE VAL LYS MET SEQRES 4 A 459 PRO ALA LEU SER PRO THR MET THR SER GLY ASN ILE GLY SEQRES 5 A 459 ALA TRP GLN LYS LYS PRO GLY ASP ALA ILE THR PRO GLY SEQRES 6 A 459 GLU VAL LEU VAL GLU ILE GLU THR ASP LYS ALA GLN MET SEQRES 7 A 459 ASP PHE GLU PHE GLN GLU GLU GLY VAL LEU ALA LYS ILE SEQRES 8 A 459 LEU LYS GLU THR GLY GLU LYS ASP VAL ALA VAL GLY SER SEQRES 9 A 459 PRO ILE ALA VAL LEU VAL GLU GLU GLY THR ASP ILE ASN SEQRES 10 A 459 ALA PHE GLN ASN PHE THR LEU GLU ASP ALA GLY GLY ASP SEQRES 11 A 459 ALA ALA ALA PRO ALA ALA PRO ALA LYS GLU GLU LEU ALA SEQRES 12 A 459 LYS ALA GLU THR ALA PRO THR PRO ALA SER THR SER ALA SEQRES 13 A 459 PRO GLU PRO GLU GLU THR THR SER THR GLY LYS LEU GLU SEQRES 14 A 459 PRO ALA LEU ASP ARG GLU PRO ASN VAL SER PHE ALA ALA SEQRES 15 A 459 LYS LYS LEU ALA HIS GLU LEU ASP VAL PRO LEU LYS ALA SEQRES 16 A 459 LEU LYS GLY THR GLY PRO GLY GLY LYS ILE THR GLU GLU SEQRES 17 A 459 ASP VAL LYS LYS ALA ALA SER ALA PRO ALA ALA ALA ALA SEQRES 18 A 459 ALA ALA PRO GLY ALA ALA TYR GLN ASP ILE PRO ILE SER SEQRES 19 A 459 ASN MET ARG LYS THR ILE ALA THR ARG LEU LYS GLU SER SEQRES 20 A 459 VAL SER GLU ASN PRO HIS PHE PHE VAL THR SER GLU LEU SEQRES 21 A 459 SER VAL SER LYS LEU LEU LYS LEU ARG GLN ALA LEU ASN SEQRES 22 A 459 SER SER ALA GLU GLY ARG TYR LYS LEU SER VAL ASN ASP SEQRES 23 A 459 PHE LEU ILE LYS ALA ILE ALA VAL ALA CYS LYS ARG VAL SEQRES 24 A 459 PRO ALA VAL ASN SER SER TRP ARG ASP GLY VAL ILE ARG SEQRES 25 A 459 GLN PHE ASP THR VAL ASP VAL SER VAL ALA VAL ALA THR SEQRES 26 A 459 PRO THR GLY LEU ILE THR PRO ILE VAL LYS GLY VAL GLU SEQRES 27 A 459 ALA LYS GLY LEU GLU THR ILE SER ALA THR VAL LYS GLU SEQRES 28 A 459 LEU ALA LYS LYS ALA ARG ASP GLY LYS LEU LYS PRO GLU SEQRES 29 A 459 ASP TYR GLN GLY GLY THR ILE SER ILE SER ASN MET GLY SEQRES 30 A 459 MET ASN PRO ALA VAL GLU ARG PHE THR ALA ILE ILE ASN SEQRES 31 A 459 PRO PRO GLN ALA ALA ILE LEU ALA VAL GLY THR THR LYS SEQRES 32 A 459 LYS VAL ALA VAL PRO VAL GLU ASN GLU ASP GLY THR THR SEQRES 33 A 459 GLY VAL GLU TRP ASP ASP GLN ILE VAL VAL THR ALA SER SEQRES 34 A 459 PHE ASP HIS LYS VAL VAL ASP GLY ALA VAL GLY ALA GLU SEQRES 35 A 459 TRP MET ARG GLU LEU LYS LYS VAL VAL GLU ASN PRO LEU SEQRES 36 A 459 GLU LEU LEU LEU HELIX 1 AA1 VAL A 262 ALA A 276 1 15 HELIX 2 AA2 SER A 283 VAL A 299 1 17 HELIX 3 AA3 GLY A 336 LYS A 340 5 5 HELIX 4 AA4 LEU A 342 ASP A 358 1 17 HELIX 5 AA5 LYS A 362 TYR A 366 5 5 HELIX 6 AA6 ASP A 436 ASN A 453 1 18 HELIX 7 AA7 ASN A 453 LEU A 458 1 6 SHEET 1 AA1 6 PHE A 254 PHE A 255 0 SHEET 2 AA1 6 GLU A 419 PHE A 430 -1 O PHE A 430 N PHE A 254 SHEET 3 AA1 6 ALA A 395 VAL A 407 -1 N ALA A 398 O THR A 427 SHEET 4 AA1 6 SER A 372 ASN A 375 1 N SER A 374 O LEU A 397 SHEET 5 AA1 6 VAL A 319 ALA A 324 1 N SER A 320 O ILE A 373 SHEET 6 AA1 6 LEU A 329 ILE A 330 -1 O ILE A 330 N VAL A 323 SHEET 1 AA2 6 PHE A 254 PHE A 255 0 SHEET 2 AA2 6 GLU A 419 PHE A 430 -1 O PHE A 430 N PHE A 254 SHEET 3 AA2 6 ALA A 395 VAL A 407 -1 N ALA A 398 O THR A 427 SHEET 4 AA2 6 SER A 372 ASN A 375 1 N SER A 374 O LEU A 397 SHEET 5 AA2 6 VAL A 319 ALA A 324 1 N SER A 320 O ILE A 373 SHEET 6 AA2 6 ILE A 333 VAL A 334 -1 O VAL A 334 N VAL A 319 SHEET 1 AA3 2 SER A 304 TRP A 306 0 SHEET 2 AA3 2 ILE A 311 GLN A 313 -1 O ARG A 312 N SER A 305 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000