HEADER RNA BINDING PROTEIN 12-JAN-21 7BIK TITLE CRYSTAL STRUCTURE OF YTHDF2 IN COMPLEX WITH M6AM COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING FAMILY PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-14,HIGH-GLUCOSE-REGULATED PROTEIN COMPND 5 8,RENAL CARCINOMA ANTIGEN NY-REN-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YTHDF2, HGRG8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS EPITRANSCRIPTOMIC READER, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,A.CAFLISCH REVDAT 2 31-JAN-24 7BIK 1 REMARK REVDAT 1 24-NOV-21 7BIK 0 JRNL AUTH X.WANG,A.CAFLISCH JRNL TITL CRYSTAL STRUCTURE OF YTHDF2 IN COMPLEX WITH M6AM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4080 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0500 - 4.3700 1.00 2598 137 0.1795 0.2142 REMARK 3 2 4.3700 - 3.4700 1.00 2580 136 0.1553 0.1999 REMARK 3 3 3.4700 - 3.0300 1.00 2558 135 0.1815 0.2035 REMARK 3 4 3.0300 - 2.7500 1.00 2572 135 0.1938 0.2418 REMARK 3 5 2.7500 - 2.5500 1.00 2588 136 0.2223 0.2633 REMARK 3 6 2.5500 - 2.4000 1.00 2534 134 0.1996 0.2533 REMARK 3 7 2.4000 - 2.2800 1.00 2543 133 0.1913 0.2642 REMARK 3 8 2.2800 - 2.1800 1.00 2567 136 0.1941 0.2509 REMARK 3 9 2.1800 - 2.1000 1.00 2545 133 0.2238 0.2961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.246 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.663 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2518 REMARK 3 ANGLE : 0.895 3407 REMARK 3 CHIRALITY : 0.060 350 REMARK 3 PLANARITY : 0.004 429 REMARK 3 DIHEDRAL : 14.194 898 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MARCH 15, 2019 REMARK 200 DATA SCALING SOFTWARE : XSCALE MARCH 15, 2019 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47916 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 44.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 59.53 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.19_4080 REMARK 200 STARTING MODEL: 4WQN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULPHATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.84600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.92300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.88450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.96150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.80750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 386 REMARK 465 GLY A 387 REMARK 465 SER A 388 REMARK 465 SER A 389 REMARK 465 TYR A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 SER A 397 REMARK 465 SER A 398 REMARK 465 GLY A 399 REMARK 465 HIS A 549 REMARK 465 THR A 550 REMARK 465 THR A 551 REMARK 465 SER A 552 REMARK 465 MET B 386 REMARK 465 GLY B 387 REMARK 465 SER B 388 REMARK 465 SER B 389 REMARK 465 TYR B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 SER B 397 REMARK 465 SER B 398 REMARK 465 GLY B 399 REMARK 465 HIS B 549 REMARK 465 THR B 550 REMARK 465 THR B 551 REMARK 465 SER B 552 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 400 CG CD OE1 OE2 REMARK 470 LEU A 402 CG CD1 CD2 REMARK 470 GLN A 405 CG CD OE1 NE2 REMARK 470 HIS A 406 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 ARG A 498 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 LYS A 548 CG CD CE NZ REMARK 470 GLU B 400 CG CD OE1 OE2 REMARK 470 GLN B 405 CG CD OE1 NE2 REMARK 470 LYS B 408 CG CD CE NZ REMARK 470 LYS B 452 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 406 -14.83 78.02 REMARK 500 SER B 434 -164.84 -112.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TV8 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7A1V RELATED DB: PDB DBREF 7BIK A 408 552 UNP Q9Y5A9 YTHD2_HUMAN 408 552 DBREF 7BIK B 408 552 UNP Q9Y5A9 YTHD2_HUMAN 408 552 SEQADV 7BIK MET A 386 UNP Q9Y5A9 INITIATING METHIONINE SEQADV 7BIK GLY A 387 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK SER A 388 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK SER A 389 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK TYR A 390 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS A 391 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS A 392 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS A 393 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS A 394 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS A 395 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS A 396 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK SER A 397 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK SER A 398 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK GLY A 399 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK GLU A 400 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK ASN A 401 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK LEU A 402 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK TYR A 403 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK PHE A 404 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK GLN A 405 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS A 406 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK MET A 407 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK MET B 386 UNP Q9Y5A9 INITIATING METHIONINE SEQADV 7BIK GLY B 387 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK SER B 388 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK SER B 389 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK TYR B 390 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS B 391 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS B 392 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS B 393 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS B 394 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS B 395 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS B 396 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK SER B 397 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK SER B 398 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK GLY B 399 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK GLU B 400 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK ASN B 401 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK LEU B 402 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK TYR B 403 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK PHE B 404 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK GLN B 405 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK HIS B 406 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7BIK MET B 407 UNP Q9Y5A9 EXPRESSION TAG SEQRES 1 A 167 MET GLY SER SER TYR HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 167 GLY GLU ASN LEU TYR PHE GLN HIS MET LYS HIS GLY ARG SEQRES 3 A 167 VAL PHE ILE ILE LYS SER TYR SER GLU ASP ASP ILE HIS SEQRES 4 A 167 ARG SER ILE LYS TYR ASN ILE TRP CYS SER THR GLU HIS SEQRES 5 A 167 GLY ASN LYS ARG LEU ASP ALA ALA TYR ARG SER MET ASN SEQRES 6 A 167 GLY LYS GLY PRO VAL TYR LEU LEU PHE SER VAL ASN GLY SEQRES 7 A 167 SER GLY HIS PHE CYS GLY VAL ALA GLU MET LYS SER ALA SEQRES 8 A 167 VAL ASP TYR ASN THR CYS ALA GLY VAL TRP SER GLN ASP SEQRES 9 A 167 LYS TRP LYS GLY ARG PHE ASP VAL ARG TRP ILE PHE VAL SEQRES 10 A 167 LYS ASP VAL PRO ASN SER GLN LEU ARG HIS ILE ARG LEU SEQRES 11 A 167 GLU ASN ASN GLU ASN LYS PRO VAL THR ASN SER ARG ASP SEQRES 12 A 167 THR GLN GLU VAL PRO LEU GLU LYS ALA LYS GLN VAL LEU SEQRES 13 A 167 LYS ILE ILE ALA SER TYR LYS HIS THR THR SER SEQRES 1 B 167 MET GLY SER SER TYR HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 B 167 GLY GLU ASN LEU TYR PHE GLN HIS MET LYS HIS GLY ARG SEQRES 3 B 167 VAL PHE ILE ILE LYS SER TYR SER GLU ASP ASP ILE HIS SEQRES 4 B 167 ARG SER ILE LYS TYR ASN ILE TRP CYS SER THR GLU HIS SEQRES 5 B 167 GLY ASN LYS ARG LEU ASP ALA ALA TYR ARG SER MET ASN SEQRES 6 B 167 GLY LYS GLY PRO VAL TYR LEU LEU PHE SER VAL ASN GLY SEQRES 7 B 167 SER GLY HIS PHE CYS GLY VAL ALA GLU MET LYS SER ALA SEQRES 8 B 167 VAL ASP TYR ASN THR CYS ALA GLY VAL TRP SER GLN ASP SEQRES 9 B 167 LYS TRP LYS GLY ARG PHE ASP VAL ARG TRP ILE PHE VAL SEQRES 10 B 167 LYS ASP VAL PRO ASN SER GLN LEU ARG HIS ILE ARG LEU SEQRES 11 B 167 GLU ASN ASN GLU ASN LYS PRO VAL THR ASN SER ARG ASP SEQRES 12 B 167 THR GLN GLU VAL PRO LEU GLU LYS ALA LYS GLN VAL LEU SEQRES 13 B 167 LYS ILE ILE ALA SER TYR LYS HIS THR THR SER HET GOL A 601 6 HET GOL A 602 6 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET GOL B 601 6 HET TV8 B 602 21 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM TV8 (2~{R},3~{S},4~{R},5~{R})-2-(HYDROXYMETHYL)-4-METHOXY- HETNAM 2 TV8 5-[6-(METHYLAMINO)PURIN-9-YL]OXOLAN-3-OL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 SO4 7(O4 S 2-) FORMUL 10 TV8 C12 H17 N5 O4 FORMUL 14 HOH *161(H2 O) HELIX 1 AA1 SER A 419 ASN A 430 1 12 HELIX 2 AA2 THR A 435 ASN A 450 1 16 HELIX 3 AA3 SER A 508 LEU A 510 5 3 HELIX 4 AA4 LEU A 515 GLU A 519 5 5 HELIX 5 AA5 PRO A 522 SER A 526 5 5 HELIX 6 AA6 PRO A 533 TYR A 547 1 15 HELIX 7 AA7 SER B 419 ASN B 430 1 12 HELIX 8 AA8 THR B 435 ASN B 450 1 16 HELIX 9 AA9 SER B 508 LEU B 510 5 3 HELIX 10 AB1 PRO B 522 SER B 526 5 5 HELIX 11 AB2 PRO B 533 TYR B 547 1 15 SHEET 1 AA1 6 ILE A 431 TRP A 432 0 SHEET 2 AA1 6 PHE A 495 PRO A 506 -1 O PHE A 495 N TRP A 432 SHEET 3 AA1 6 HIS A 466 MET A 473 -1 N VAL A 470 O ILE A 500 SHEET 4 AA1 6 VAL A 455 VAL A 461 -1 N VAL A 455 O MET A 473 SHEET 5 AA1 6 ARG A 411 SER A 417 1 N PHE A 413 O LEU A 458 SHEET 6 AA1 6 GLU A 531 VAL A 532 -1 O VAL A 532 N VAL A 412 SHEET 1 AA2 6 ILE B 431 TRP B 432 0 SHEET 2 AA2 6 PHE B 495 PRO B 506 -1 O PHE B 495 N TRP B 432 SHEET 3 AA2 6 HIS B 466 MET B 473 -1 N VAL B 470 O ILE B 500 SHEET 4 AA2 6 VAL B 455 VAL B 461 -1 N LEU B 457 O ALA B 471 SHEET 5 AA2 6 ARG B 411 SER B 417 1 N ILE B 415 O LEU B 458 SHEET 6 AA2 6 GLU B 531 VAL B 532 -1 O VAL B 532 N VAL B 412 SITE 1 AC1 4 THR A 435 GLU A 436 TRP A 491 HOH A 742 SITE 1 AC2 7 LYS A 416 TYR A 418 ASN A 462 TRP A 491 SITE 2 AC2 7 HOH A 701 HOH A 713 HOH A 724 SITE 1 AC3 6 VAL A 461 GLY A 463 SER A 464 GLY A 465 SITE 2 AC3 6 ASN A 507 HOH A 749 SITE 1 AC4 5 ARG A 425 LYS A 428 TYR A 429 LYS A 536 SITE 2 AC4 5 HOH A 741 SITE 1 AC5 4 ASN A 507 ARG A 511 THR A 524 ASN A 525 SITE 1 AC6 3 ARG A 514 ASN A 520 LYS B 428 SITE 1 AC7 5 HIS B 409 TYR B 446 LYS B 474 SER B 475 SITE 2 AC7 5 ALA B 476 SITE 1 AC8 13 LYS B 416 SER B 417 TYR B 418 ASP B 422 SITE 2 AC8 13 TRP B 432 CYS B 433 TRP B 486 LYS B 490 SITE 3 AC8 13 TRP B 491 ARG B 527 ASP B 528 HOH B 707 SITE 4 AC8 13 HOH B 757 SITE 1 AC9 12 LYS B 416 VAL B 461 ASN B 462 GLY B 463 SITE 2 AC9 12 SER B 464 GLY B 465 ASN B 507 THR B 524 SITE 3 AC9 12 HOH B 704 HOH B 722 HOH B 730 HOH B 761 SITE 1 AD1 4 LYS B 428 TYR B 429 LYS B 536 HOH B 744 SITE 1 AD2 3 ASN B 507 ARG B 511 HOH B 705 CRYST1 80.368 80.368 113.769 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012443 0.007184 0.000000 0.00000 SCALE2 0.000000 0.014368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008790 0.00000 MTRIX1 1 -0.979624 -0.134759 -0.148921 -81.52595 1 MTRIX2 1 -0.140184 0.989771 0.026505 -8.45372 1 MTRIX3 1 0.143826 0.046841 -0.988494 -8.83609 1