HEADER PEPTIDE BINDING PROTEIN 13-JAN-21 7BIQ TITLE 14-3-3 SIGMA WITH RELA/P65 BINDING SITE PS45 AND COVALENTLY BOUND TITLE 2 TCF521-180 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSCRIPTION FACTOR P65; COMPND 8 CHAIN: P; COMPND 9 SYNONYM: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT,NUCLEAR FACTOR OF COMPND 10 KAPPA LIGHT POLYPEPTIDE GENE ENHANCER IN B-CELLS 3; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS BENZALDEHYDE, COVALENT FRAGMENT, P65, 1433, RELA, PEPTIDE BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WOLTER,C.OTTMANN REVDAT 3 31-JAN-24 7BIQ 1 REMARK REVDAT 2 07-JUL-21 7BIQ 1 JRNL REVDAT 1 16-JUN-21 7BIQ 0 JRNL AUTH M.WOLTER,D.VALENTI,P.J.COSSAR,S.HRISTEVA,L.M.LEVY,T.GENSKI, JRNL AUTH 2 T.HOFFMANN,L.BRUNSVELD,D.TZALIS,C.OTTMANN JRNL TITL AN EXPLORATION OF CHEMICAL PROPERTIES REQUIRED FOR JRNL TITL 2 COOPERATIVE STABILIZATION OF THE 14-3-3 INTERACTION WITH JRNL TITL 3 NF-KAPPA B-UTILIZING A REVERSIBLE COVALENT TETHERING JRNL TITL 4 APPROACH. JRNL REF J.MED.CHEM. V. 64 8423 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34076416 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00401 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 90582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 4576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5190 - 3.7280 1.00 5565 292 0.1616 0.1745 REMARK 3 2 3.7280 - 2.9592 1.00 5572 276 0.1620 0.1727 REMARK 3 3 2.9592 - 2.5852 1.00 5545 283 0.1768 0.1934 REMARK 3 4 2.5852 - 2.3488 1.00 5561 299 0.1672 0.1834 REMARK 3 5 2.3488 - 2.1805 1.00 5586 258 0.1539 0.1538 REMARK 3 6 2.1805 - 2.0519 1.00 5596 269 0.1558 0.1783 REMARK 3 7 2.0519 - 1.9492 1.00 5566 255 0.1635 0.1808 REMARK 3 8 1.9492 - 1.8643 1.00 5586 273 0.1640 0.1774 REMARK 3 9 1.8643 - 1.7925 1.00 5574 281 0.1653 0.1832 REMARK 3 10 1.7925 - 1.7307 1.00 5566 281 0.1640 0.1893 REMARK 3 11 1.7307 - 1.6766 1.00 5552 280 0.1606 0.1416 REMARK 3 12 1.6766 - 1.6286 1.00 5574 292 0.1524 0.1626 REMARK 3 13 1.6286 - 1.5858 1.00 5543 283 0.1538 0.1590 REMARK 3 14 1.5858 - 1.5471 1.00 5611 268 0.1601 0.1612 REMARK 3 15 1.5471 - 1.5119 1.00 5477 311 0.1609 0.1676 REMARK 3 16 1.5119 - 1.4797 1.00 5563 297 0.1649 0.1801 REMARK 3 17 1.4797 - 1.4501 1.00 5571 321 0.1678 0.1785 REMARK 3 18 1.4501 - 1.4228 1.00 5462 323 0.1746 0.1859 REMARK 3 19 1.4228 - 1.3973 1.00 5526 279 0.1769 0.1967 REMARK 3 20 1.3973 - 1.3737 1.00 5565 316 0.1808 0.1833 REMARK 3 21 1.3737 - 1.3515 1.00 5562 314 0.1792 0.1886 REMARK 3 22 1.3515 - 1.3307 1.00 5537 304 0.1891 0.1880 REMARK 3 23 1.3307 - 1.3111 1.00 5503 347 0.1872 0.2004 REMARK 3 24 1.3111 - 1.2927 1.00 5518 322 0.1863 0.1703 REMARK 3 25 1.2927 - 1.2752 1.00 5539 321 0.1905 0.2091 REMARK 3 26 1.2752 - 1.2586 1.00 5496 361 0.1940 0.2097 REMARK 3 27 1.2586 - 1.2429 1.00 5526 270 0.1951 0.2171 REMARK 3 28 1.2429 - 1.2279 1.00 5591 258 0.2003 0.2219 REMARK 3 29 1.2279 - 1.2136 1.00 5499 325 0.1977 0.2241 REMARK 3 30 1.2136 - 1.2000 1.00 5476 318 0.2136 0.2324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2047 REMARK 3 ANGLE : 1.447 2776 REMARK 3 CHIRALITY : 0.088 299 REMARK 3 PLANARITY : 0.009 367 REMARK 3 DIHEDRAL : 9.230 1189 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976284 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 66.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6QHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095 M HEPES NA PH 7.1, 27% PEG400, REMARK 280 0.19M CALCIUM CHLORIDE, 5% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.22850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.22850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.21300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.22000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.21300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.22000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.22850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.21300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.22000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.22850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.21300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.22000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 740 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ALA A 232 REMARK 465 ASP A 233 REMARK 465 ASN A 234 REMARK 465 ALA A 235 REMARK 465 GLY A 236 REMARK 465 GLU A 237 REMARK 465 GLU A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 ALA A 242 REMARK 465 PRO A 243 REMARK 465 GLN A 244 REMARK 465 GLU A 245 REMARK 465 PRO A 246 REMARK 465 GLN A 247 REMARK 465 SER A 248 REMARK 465 GLU P 39 REMARK 465 GLY P 40 REMARK 465 ARG P 41 REMARK 465 SER P 42 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 ASP A 139 CG OD1 OD2 REMARK 470 LYS A 160 CE NZ REMARK 470 LYS A 214 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 50 O HOH A 401 1.89 REMARK 500 O HOH P 202 O HOH P 204 1.99 REMARK 500 ND2 ASN A 50 O HOH A 402 2.05 REMARK 500 O HOH A 421 O HOH A 655 2.09 REMARK 500 O HOH A 613 O HOH A 627 2.13 REMARK 500 O HOH P 202 O HOH P 215 2.16 REMARK 500 O HOH A 407 O HOH A 456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 110 OH TYR A 213 8555 1.67 REMARK 500 O HOH A 409 O HOH A 516 3654 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 213 CE1 TYR A 213 CZ -0.106 REMARK 500 TYR A 213 CE2 TYR A 213 CD2 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 3 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 GLU A 133 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 213 CG - CD2 - CE2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 75.70 -108.31 REMARK 500 HIS A 106 37.77 -144.30 REMARK 500 THR A 136 -1.38 -151.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 740 DISTANCE = 6.70 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 GLU A 2 OE1 0.0 REMARK 620 3 HOH A 436 O 79.3 79.3 REMARK 620 4 HOH A 436 O 77.7 77.7 147.5 REMARK 620 5 HOH A 551 O 74.7 74.7 126.0 68.6 REMARK 620 6 HOH A 551 O 146.3 146.3 68.6 126.0 133.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE2 48.0 REMARK 620 3 GLU A 110 O 90.9 92.9 REMARK 620 4 GLU A 110 O 76.4 77.7 16.3 REMARK 620 5 GLU A 188 OE2 119.7 89.4 44.0 50.6 REMARK 620 6 HOH A 470 O 80.5 128.4 82.5 87.7 118.3 REMARK 620 7 HOH A 502 O 162.6 144.7 98.7 114.5 76.7 86.4 REMARK 620 8 HOH A 633 O 82.5 86.0 172.1 158.7 143.7 92.0 86.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 75 OE2 REMARK 620 2 GLU A 161 O 76.6 REMARK 620 3 HOH A 503 O 112.9 37.0 REMARK 620 4 HOH A 636 O 88.9 159.9 150.0 REMARK 620 5 HOH A 645 O 167.7 101.5 64.5 89.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QHL RELATED DB: PDB REMARK 900 BINARY STRUCTURE DBREF 7BIQ A 1 248 UNP P31947 1433S_HUMAN 1 248 DBREF 7BIQ P 39 51 UNP Q04206 TF65_HUMAN 39 51 SEQADV 7BIQ GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 7BIQ ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 7BIQ MET A -2 UNP P31947 EXPRESSION TAG SEQADV 7BIQ GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 7BIQ SER A 0 UNP P31947 EXPRESSION TAG SEQADV 7BIQ ARG P 49 UNP Q04206 GLU 49 CONFLICT SEQRES 1 A 253 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 253 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 253 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 253 GLU LEU SER CSO GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 253 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 253 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 253 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 253 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 253 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 253 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 253 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 253 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 253 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 253 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 253 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 253 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 253 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 253 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 253 TRP THR ALA ASP ASN ALA GLY GLU GLU GLY GLY GLU ALA SEQRES 20 A 253 PRO GLN GLU PRO GLN SER SEQRES 1 P 13 GLU GLY ARG SER ALA GLY SEP ILE PRO GLY ARG ARG SER MODRES 7BIQ CSO A 38 CYS MODIFIED RESIDUE MODRES 7BIQ SEP P 45 SER MODIFIED RESIDUE HET CSO A 38 14 HET SEP P 45 10 HET TVB A 301 21 HET CA A 302 1 HET CA A 303 1 HET CA A 304 1 HET CL A 305 1 HET GOL A 306 6 HET CL P 101 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SEP PHOSPHOSERINE HETNAM TVB 4-[[(2~{R})-2-METHYL-3,4-DIHYDRO-2~{H}-QUINOLIN-1- HETNAM 2 TVB YL]SULFONYL]BENZALDEHYDE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 TVB C17 H17 N O3 S FORMUL 4 CA 3(CA 2+) FORMUL 7 CL 2(CL 1-) FORMUL 8 GOL C3 H8 O3 FORMUL 10 HOH *365(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 LYS A 32 1 15 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 SER A 105 1 27 HELIX 5 AA5 HIS A 106 ALA A 111 1 6 HELIX 6 AA6 ASP A 113 ALA A 135 1 23 HELIX 7 AA7 ASP A 139 MET A 162 1 24 HELIX 8 AA8 ASN A 166 ILE A 183 1 18 HELIX 9 AA9 SER A 186 ALA A 203 1 18 HELIX 10 AB1 ASP A 204 LEU A 208 5 5 HELIX 11 AB2 SER A 209 THR A 231 1 23 LINK C SER A 37 N ACSO A 38 1555 1555 1.34 LINK C SER A 37 N BCSO A 38 1555 1555 1.36 LINK C ACSO A 38 N GLU A 39 1555 1555 1.33 LINK C BCSO A 38 N GLU A 39 1555 1555 1.33 LINK NZ LYS A 122 C20 TVB A 301 1555 1555 1.41 LINK C GLY P 44 N SEP P 45 1555 1555 1.33 LINK C SEP P 45 N ILE P 46 1555 1555 1.29 LINK OE1 GLU A 2 CA CA A 303 1555 1555 2.45 LINK OE1 GLU A 2 CA CA A 303 1555 3654 2.45 LINK OE1 GLU A 35 CA CA A 302 1555 1555 2.26 LINK OE2 GLU A 35 CA CA A 302 1555 1555 2.80 LINK OE2 GLU A 75 CA CA A 304 1555 1555 2.53 LINK O AGLU A 110 CA CA A 302 1555 1555 2.28 LINK O BGLU A 110 CA CA A 302 1555 1555 2.35 LINK O GLU A 161 CA CA A 304 1555 7555 2.24 LINK OE2 GLU A 188 CA CA A 302 1555 6555 2.33 LINK CA CA A 302 O HOH A 470 1555 1555 2.44 LINK CA CA A 302 O HOH A 502 1555 6554 2.37 LINK CA CA A 302 O HOH A 633 1555 1555 2.36 LINK CA CA A 303 O HOH A 436 1555 1555 2.58 LINK CA CA A 303 O HOH A 436 1555 3654 2.58 LINK CA CA A 303 O HOH A 551 1555 1555 2.23 LINK CA CA A 303 O HOH A 551 1555 3654 2.23 LINK CA CA A 304 O HOH A 503 1555 7545 2.38 LINK CA CA A 304 O HOH A 636 1555 7545 2.57 LINK CA CA A 304 O HOH A 645 1555 7545 2.48 CISPEP 1 SER A 105 HIS A 106 0 7.62 CRYST1 82.426 112.440 62.457 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016011 0.00000