data_7BIT # _entry.id 7BIT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.341 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7BIT WWPDB D_1292113452 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7BIT _pdbx_database_status.recvd_initial_deposition_date 2021-01-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Williams, P.A.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0002-1257-2351 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first 4071 _citation.page_last 4088 _citation.title 'Structure-Based Design of Potent and Orally Active Isoindolinone Inhibitors of MDM2-p53 Protein-Protein Interaction.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.0c02188 _citation.pdbx_database_id_PubMed 33761253 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chessari, G.' 1 ? primary 'Hardcastle, I.R.' 2 ? primary 'Ahn, J.S.' 3 ? primary 'Anil, B.' 4 ? primary 'Anscombe, E.' 5 ? primary 'Bawn, R.H.' 6 ? primary 'Bevan, L.D.' 7 ? primary 'Blackburn, T.J.' 8 ? primary 'Buck, I.' 9 ? primary 'Cano, C.' 10 ? primary 'Carbain, B.' 11 ? primary 'Castro, J.' 12 ? primary 'Cons, B.' 13 ? primary 'Cully, S.J.' 14 ? primary 'Endicott, J.A.' 15 ? primary 'Fazal, L.' 16 ? primary 'Golding, B.T.' 17 ? primary 'Griffin, R.J.' 18 ? primary 'Haggerty, K.' 19 ? primary 'Harnor, S.J.' 20 ? primary 'Hearn, K.' 21 ? primary 'Hobson, S.' 22 ? primary 'Holvey, R.S.' 23 ? primary 'Howard, S.' 24 ? primary 'Jennings, C.E.' 25 ? primary 'Johnson, C.N.' 26 ? primary 'Lunec, J.' 27 ? primary 'Miller, D.C.' 28 ? primary 'Newell, D.R.' 29 ? primary 'Noble, M.E.M.' 30 ? primary 'Reeks, J.' 31 ? primary 'Revill, C.H.' 32 ? primary 'Riedinger, C.' 33 ? primary 'St Denis, J.D.' 34 ? primary 'Tamanini, E.' 35 ? primary 'Thomas, H.' 36 ? primary 'Thompson, N.T.' 37 ? primary 'Vinkovic, M.' 38 ? primary 'Wedge, S.R.' 39 ? primary 'Williams, P.A.' 40 ? primary 'Wilsher, N.E.' 41 ? primary 'Zhang, B.' 42 ? primary 'Zhao, Y.' 43 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7BIT _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.022 _cell.length_a_esd ? _cell.length_b 71.022 _cell.length_b_esd ? _cell.length_c 101.194 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase Mdm2' 12830.667 1 2.3.2.27 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn ;(3~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-3-(4-chlorophenyl)-4-fluoranyl-3-[(1-oxidanylcyclopropyl)methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one ; 531.403 1 ? ? ? ? 4 water nat water 18.015 58 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Double minute 2 protein,Hdm2,Oncoprotein Mdm2,RING-type E3 ubiquitin transferase Mdm2,p53-binding protein Mdm2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDAAQQHIVYCSNDLLGDLFGVPSF SVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSEN ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDAAQQHIVYCSNDLLGDLFGVPSF SVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSEN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLN n 1 8 ILE n 1 9 PRO n 1 10 ALA n 1 11 SER n 1 12 GLU n 1 13 GLN n 1 14 GLU n 1 15 THR n 1 16 LEU n 1 17 VAL n 1 18 ARG n 1 19 PRO n 1 20 LYS n 1 21 PRO n 1 22 LEU n 1 23 LEU n 1 24 LEU n 1 25 LYS n 1 26 LEU n 1 27 LEU n 1 28 LYS n 1 29 SER n 1 30 VAL n 1 31 GLY n 1 32 ALA n 1 33 GLN n 1 34 LYS n 1 35 ASP n 1 36 THR n 1 37 TYR n 1 38 THR n 1 39 MET n 1 40 LYS n 1 41 GLU n 1 42 VAL n 1 43 LEU n 1 44 PHE n 1 45 TYR n 1 46 LEU n 1 47 GLY n 1 48 GLN n 1 49 TYR n 1 50 ILE n 1 51 MET n 1 52 THR n 1 53 LYS n 1 54 ARG n 1 55 LEU n 1 56 TYR n 1 57 ASP n 1 58 ALA n 1 59 ALA n 1 60 GLN n 1 61 GLN n 1 62 HIS n 1 63 ILE n 1 64 VAL n 1 65 TYR n 1 66 CYS n 1 67 SER n 1 68 ASN n 1 69 ASP n 1 70 LEU n 1 71 LEU n 1 72 GLY n 1 73 ASP n 1 74 LEU n 1 75 PHE n 1 76 GLY n 1 77 VAL n 1 78 PRO n 1 79 SER n 1 80 PHE n 1 81 SER n 1 82 VAL n 1 83 LYS n 1 84 GLU n 1 85 HIS n 1 86 ARG n 1 87 LYS n 1 88 ILE n 1 89 TYR n 1 90 THR n 1 91 MET n 1 92 ILE n 1 93 TYR n 1 94 ARG n 1 95 ASN n 1 96 LEU n 1 97 VAL n 1 98 VAL n 1 99 VAL n 1 100 ASN n 1 101 GLN n 1 102 GLN n 1 103 GLU n 1 104 SER n 1 105 SER n 1 106 ASP n 1 107 SER n 1 108 GLY n 1 109 THR n 1 110 SER n 1 111 VAL n 1 112 SER n 1 113 GLU n 1 114 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 114 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MDM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant pLysS _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MDM2_HUMAN _struct_ref.pdbx_db_accession Q00987 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQESSDSGTSVSEN ; _struct_ref.pdbx_align_begin 17 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7BIT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q00987 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 17 _struct_ref_seq.pdbx_auth_seq_align_end 125 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7BIT GLY A 1 ? UNP Q00987 ? ? 'expression tag' 12 1 1 7BIT PRO A 2 ? UNP Q00987 ? ? 'expression tag' 13 2 1 7BIT LEU A 3 ? UNP Q00987 ? ? 'expression tag' 14 3 1 7BIT GLY A 4 ? UNP Q00987 ? ? 'expression tag' 15 4 1 7BIT SER A 5 ? UNP Q00987 ? ? 'expression tag' 16 5 1 7BIT ALA A 58 ? UNP Q00987 GLU 69 'engineered mutation' 69 6 1 7BIT ALA A 59 ? UNP Q00987 LYS 70 'engineered mutation' 70 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TV5 non-polymer . ;(3~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-3-(4-chlorophenyl)-4-fluoranyl-3-[(1-oxidanylcyclopropyl)methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one ; ? 'C27 H25 Cl2 F N2 O4' 531.403 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7BIT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.5M (NH4)2SO4 15% Glycerol .1M pH=8.5 Tris Cl/NaOH ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-04-14 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54187 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU FR-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54187 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7BIT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.13 _reflns.d_resolution_low 35.51 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7991 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 89.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.7 _reflns.pdbx_Rmerge_I_obs 0.03 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.13 _reflns_shell.d_res_low 2.15 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 118 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.31 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 2.8622 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 2.8622 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -5.7245 _refine.B_iso_max 134.220 _refine.B_iso_mean 53.6730 _refine.B_iso_min 33.380 _refine.correlation_coeff_Fo_to_Fc 0.9130 _refine.correlation_coeff_Fo_to_Fc_free 0.8700 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7BIT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.1300 _refine.ls_d_res_low 35.5100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7971 _refine.ls_number_reflns_R_free 397 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 88.8000 _refine.ls_percent_reflns_R_free 4.9800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2580 _refine.ls_R_factor_R_free 0.3070 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2550 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.2250 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.2360 _refine.pdbx_overall_SU_R_Blow_DPI 0.2770 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.5050 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 7BIT _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.400 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.1300 _refine_hist.d_res_low 35.5100 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 873 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 92 _refine_hist.pdbx_B_iso_mean_ligand 48.89 _refine_hist.pdbx_B_iso_mean_solvent 52.79 _refine_hist.pdbx_number_atoms_protein 749 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 381 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 256 ? t_gen_planes 16.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 1685 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 104 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 1880 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.012 ? 1685 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 1.050 ? 3061 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 7.410 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 18.790 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.1300 _refine_ls_shell.d_res_low 2.1900 _refine_ls_shell.number_reflns_all 420 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.number_reflns_R_work 400 _refine_ls_shell.percent_reflns_obs 54.2400 _refine_ls_shell.percent_reflns_R_free 4.7600 _refine_ls_shell.R_factor_all 0.3115 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3361 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3102 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 19 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7BIT _struct.title 'Inhibitor of MDM2-p53 Interaction' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase Mdm2,E3 ubiquitin-protein ligase Mdm2 (E.C.2.3.2.27,2.3.2.27)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7BIT _struct_keywords.text 'ligase, cell cycle, apoptosis, protein binding' _struct_keywords.pdbx_keywords APOPTOSIS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 9 ? THR A 15 ? PRO A 20 THR A 26 1 ? 7 HELX_P HELX_P2 AA2 LYS A 20 ? SER A 29 ? LYS A 31 SER A 40 1 ? 10 HELX_P HELX_P3 AA3 MET A 39 ? ARG A 54 ? MET A 50 ARG A 65 1 ? 16 HELX_P HELX_P4 AA4 ASP A 69 ? GLY A 76 ? ASP A 80 GLY A 87 1 ? 8 HELX_P HELX_P5 AA5 GLU A 84 ? ARG A 94 ? GLU A 95 ARG A 105 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 16 ? VAL A 17 ? LEU A 27 VAL A 28 AA1 2 TYR A 37 ? THR A 38 ? TYR A 48 THR A 49 AA2 1 ILE A 63 ? TYR A 65 ? ILE A 74 TYR A 76 AA2 2 SER A 79 ? SER A 81 ? SER A 90 SER A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 17 ? N VAL A 28 O TYR A 37 ? O TYR A 48 AA2 1 2 N VAL A 64 ? N VAL A 75 O PHE A 80 ? O PHE A 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 4 'binding site for residue SO4 A 201' AC2 Software A TV5 202 ? 10 'binding site for residue TV5 A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG A 86 ? ARG A 97 . ? 10_665 ? 2 AC1 4 ARG A 86 ? ARG A 97 . ? 1_555 ? 3 AC1 4 HOH D . ? HOH A 302 . ? 10_665 ? 4 AC1 4 HOH D . ? HOH A 302 . ? 1_555 ? 5 AC2 10 PRO A 21 ? PRO A 32 . ? 5_555 ? 6 AC2 10 LEU A 22 ? LEU A 33 . ? 5_555 ? 7 AC2 10 LEU A 43 ? LEU A 54 . ? 1_555 ? 8 AC2 10 GLY A 47 ? GLY A 58 . ? 1_555 ? 9 AC2 10 ILE A 50 ? ILE A 61 . ? 1_555 ? 10 AC2 10 MET A 51 ? MET A 62 . ? 1_555 ? 11 AC2 10 GLN A 61 ? GLN A 72 . ? 1_555 ? 12 AC2 10 VAL A 82 ? VAL A 93 . ? 1_555 ? 13 AC2 10 HIS A 85 ? HIS A 96 . ? 1_555 ? 14 AC2 10 ILE A 88 ? ILE A 99 . ? 1_555 ? # _atom_sites.entry_id 7BIT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014080 _atom_sites.fract_transf_matrix[1][2] 0.008129 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016258 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009882 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL F H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 12 ? ? ? A . n A 1 2 PRO 2 13 ? ? ? A . n A 1 3 LEU 3 14 ? ? ? A . n A 1 4 GLY 4 15 ? ? ? A . n A 1 5 SER 5 16 ? ? ? A . n A 1 6 SER 6 17 17 SER SER A . n A 1 7 GLN 7 18 18 GLN GLN A . n A 1 8 ILE 8 19 19 ILE ILE A . n A 1 9 PRO 9 20 20 PRO PRO A . n A 1 10 ALA 10 21 21 ALA ALA A . n A 1 11 SER 11 22 22 SER SER A . n A 1 12 GLU 12 23 23 GLU GLU A . n A 1 13 GLN 13 24 24 GLN GLN A . n A 1 14 GLU 14 25 25 GLU GLU A . n A 1 15 THR 15 26 26 THR THR A . n A 1 16 LEU 16 27 27 LEU LEU A . n A 1 17 VAL 17 28 28 VAL VAL A . n A 1 18 ARG 18 29 29 ARG ARG A . n A 1 19 PRO 19 30 30 PRO PRO A . n A 1 20 LYS 20 31 31 LYS LYS A . n A 1 21 PRO 21 32 32 PRO PRO A . n A 1 22 LEU 22 33 33 LEU LEU A . n A 1 23 LEU 23 34 34 LEU LEU A . n A 1 24 LEU 24 35 35 LEU LEU A . n A 1 25 LYS 25 36 36 LYS LYS A . n A 1 26 LEU 26 37 37 LEU LEU A . n A 1 27 LEU 27 38 38 LEU LEU A . n A 1 28 LYS 28 39 39 LYS LYS A . n A 1 29 SER 29 40 40 SER SER A . n A 1 30 VAL 30 41 41 VAL VAL A . n A 1 31 GLY 31 42 42 GLY GLY A . n A 1 32 ALA 32 43 43 ALA ALA A . n A 1 33 GLN 33 44 44 GLN GLN A . n A 1 34 LYS 34 45 45 LYS LYS A . n A 1 35 ASP 35 46 46 ASP ASP A . n A 1 36 THR 36 47 47 THR THR A . n A 1 37 TYR 37 48 48 TYR TYR A . n A 1 38 THR 38 49 49 THR THR A . n A 1 39 MET 39 50 50 MET MET A . n A 1 40 LYS 40 51 51 LYS LYS A . n A 1 41 GLU 41 52 52 GLU GLU A . n A 1 42 VAL 42 53 53 VAL VAL A . n A 1 43 LEU 43 54 54 LEU LEU A . n A 1 44 PHE 44 55 55 PHE PHE A . n A 1 45 TYR 45 56 56 TYR TYR A . n A 1 46 LEU 46 57 57 LEU LEU A . n A 1 47 GLY 47 58 58 GLY GLY A . n A 1 48 GLN 48 59 59 GLN GLN A . n A 1 49 TYR 49 60 60 TYR TYR A . n A 1 50 ILE 50 61 61 ILE ILE A . n A 1 51 MET 51 62 62 MET MET A . n A 1 52 THR 52 63 63 THR THR A . n A 1 53 LYS 53 64 64 LYS LYS A . n A 1 54 ARG 54 65 65 ARG ARG A . n A 1 55 LEU 55 66 66 LEU LEU A . n A 1 56 TYR 56 67 67 TYR TYR A . n A 1 57 ASP 57 68 68 ASP ASP A . n A 1 58 ALA 58 69 69 ALA ALA A . n A 1 59 ALA 59 70 70 ALA ALA A . n A 1 60 GLN 60 71 71 GLN GLN A . n A 1 61 GLN 61 72 72 GLN GLN A . n A 1 62 HIS 62 73 73 HIS HIS A . n A 1 63 ILE 63 74 74 ILE ILE A . n A 1 64 VAL 64 75 75 VAL VAL A . n A 1 65 TYR 65 76 76 TYR TYR A . n A 1 66 CYS 66 77 77 CYS CYS A . n A 1 67 SER 67 78 78 SER SER A . n A 1 68 ASN 68 79 79 ASN ASN A . n A 1 69 ASP 69 80 80 ASP ASP A . n A 1 70 LEU 70 81 81 LEU LEU A . n A 1 71 LEU 71 82 82 LEU LEU A . n A 1 72 GLY 72 83 83 GLY GLY A . n A 1 73 ASP 73 84 84 ASP ASP A . n A 1 74 LEU 74 85 85 LEU LEU A . n A 1 75 PHE 75 86 86 PHE PHE A . n A 1 76 GLY 76 87 87 GLY GLY A . n A 1 77 VAL 77 88 88 VAL VAL A . n A 1 78 PRO 78 89 89 PRO PRO A . n A 1 79 SER 79 90 90 SER SER A . n A 1 80 PHE 80 91 91 PHE PHE A . n A 1 81 SER 81 92 92 SER SER A . n A 1 82 VAL 82 93 93 VAL VAL A . n A 1 83 LYS 83 94 94 LYS LYS A . n A 1 84 GLU 84 95 95 GLU GLU A . n A 1 85 HIS 85 96 96 HIS HIS A . n A 1 86 ARG 86 97 97 ARG ARG A . n A 1 87 LYS 87 98 98 LYS LYS A . n A 1 88 ILE 88 99 99 ILE ILE A . n A 1 89 TYR 89 100 100 TYR TYR A . n A 1 90 THR 90 101 101 THR THR A . n A 1 91 MET 91 102 102 MET MET A . n A 1 92 ILE 92 103 103 ILE ILE A . n A 1 93 TYR 93 104 104 TYR TYR A . n A 1 94 ARG 94 105 105 ARG ARG A . n A 1 95 ASN 95 106 106 ASN ASN A . n A 1 96 LEU 96 107 107 LEU LEU A . n A 1 97 VAL 97 108 108 VAL VAL A . n A 1 98 VAL 98 109 ? ? ? A . n A 1 99 VAL 99 110 ? ? ? A . n A 1 100 ASN 100 111 ? ? ? A . n A 1 101 GLN 101 112 ? ? ? A . n A 1 102 GLN 102 113 ? ? ? A . n A 1 103 GLU 103 114 ? ? ? A . n A 1 104 SER 104 115 ? ? ? A . n A 1 105 SER 105 116 ? ? ? A . n A 1 106 ASP 106 117 ? ? ? A . n A 1 107 SER 107 118 ? ? ? A . n A 1 108 GLY 108 119 ? ? ? A . n A 1 109 THR 109 120 ? ? ? A . n A 1 110 SER 110 121 ? ? ? A . n A 1 111 VAL 111 122 ? ? ? A . n A 1 112 SER 112 123 ? ? ? A . n A 1 113 GLU 113 124 ? ? ? A . n A 1 114 ASN 114 125 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 1 SO4 SO4 A . C 3 TV5 1 202 1 TV5 L01 A . D 4 HOH 1 301 8 HOH HOH A . D 4 HOH 2 302 66 HOH HOH A . D 4 HOH 3 303 59 HOH HOH A . D 4 HOH 4 304 64 HOH HOH A . D 4 HOH 5 305 46 HOH HOH A . D 4 HOH 6 306 39 HOH HOH A . D 4 HOH 7 307 48 HOH HOH A . D 4 HOH 8 308 6 HOH HOH A . D 4 HOH 9 309 44 HOH HOH A . D 4 HOH 10 310 34 HOH HOH A . D 4 HOH 11 311 19 HOH HOH A . D 4 HOH 12 312 42 HOH HOH A . D 4 HOH 13 313 30 HOH HOH A . D 4 HOH 14 314 25 HOH HOH A . D 4 HOH 15 315 17 HOH HOH A . D 4 HOH 16 316 47 HOH HOH A . D 4 HOH 17 317 52 HOH HOH A . D 4 HOH 18 318 27 HOH HOH A . D 4 HOH 19 319 56 HOH HOH A . D 4 HOH 20 320 5 HOH HOH A . D 4 HOH 21 321 22 HOH HOH A . D 4 HOH 22 322 31 HOH HOH A . D 4 HOH 23 323 16 HOH HOH A . D 4 HOH 24 324 20 HOH HOH A . D 4 HOH 25 325 11 HOH HOH A . D 4 HOH 26 326 67 HOH HOH A . D 4 HOH 27 327 29 HOH HOH A . D 4 HOH 28 328 4 HOH HOH A . D 4 HOH 29 329 18 HOH HOH A . D 4 HOH 30 330 3 HOH HOH A . D 4 HOH 31 331 21 HOH HOH A . D 4 HOH 32 332 2 HOH HOH A . D 4 HOH 33 333 41 HOH HOH A . D 4 HOH 34 334 36 HOH HOH A . D 4 HOH 35 335 58 HOH HOH A . D 4 HOH 36 336 62 HOH HOH A . D 4 HOH 37 337 9 HOH HOH A . D 4 HOH 38 338 55 HOH HOH A . D 4 HOH 39 339 37 HOH HOH A . D 4 HOH 40 340 51 HOH HOH A . D 4 HOH 41 341 28 HOH HOH A . D 4 HOH 42 342 1 HOH HOH A . D 4 HOH 43 343 7 HOH HOH A . D 4 HOH 44 344 40 HOH HOH A . D 4 HOH 45 345 65 HOH HOH A . D 4 HOH 46 346 49 HOH HOH A . D 4 HOH 47 347 38 HOH HOH A . D 4 HOH 48 348 32 HOH HOH A . D 4 HOH 49 349 61 HOH HOH A . D 4 HOH 50 350 15 HOH HOH A . D 4 HOH 51 351 43 HOH HOH A . D 4 HOH 52 352 57 HOH HOH A . D 4 HOH 53 353 23 HOH HOH A . D 4 HOH 54 354 24 HOH HOH A . D 4 HOH 55 355 68 HOH HOH A . D 4 HOH 56 356 60 HOH HOH A . D 4 HOH 57 357 12 HOH HOH A . D 4 HOH 58 358 54 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 90 ? 1 MORE -6 ? 1 'SSA (A^2)' 5730 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-04-07 2 'Structure model' 2 0 2021-04-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Experimental preparation' 6 2 'Structure model' 'Non-polymer description' 7 2 'Structure model' 'Polymer sequence' 8 2 'Structure model' 'Source and taxonomy' 9 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' chem_comp 4 2 'Structure model' citation 5 2 'Structure model' citation_author 6 2 'Structure model' entity 7 2 'Structure model' entity_poly 8 2 'Structure model' entity_poly_seq 9 2 'Structure model' entity_src_gen 10 2 'Structure model' exptl_crystal 11 2 'Structure model' pdbx_poly_seq_scheme 12 2 'Structure model' pdbx_struct_sheet_hbond 13 2 'Structure model' pdbx_unobs_or_zero_occ_residues 14 2 'Structure model' struct_conf 15 2 'Structure model' struct_ref 16 2 'Structure model' struct_ref_seq 17 2 'Structure model' struct_ref_seq_dif 18 2 'Structure model' struct_sheet_range 19 2 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.label_seq_id' 2 2 'Structure model' '_atom_site_anisotrop.pdbx_label_seq_id' 3 2 'Structure model' '_chem_comp.formula' 4 2 'Structure model' '_chem_comp.formula_weight' 5 2 'Structure model' '_chem_comp.id' 6 2 'Structure model' '_chem_comp.mon_nstd_flag' 7 2 'Structure model' '_chem_comp.name' 8 2 'Structure model' '_chem_comp.type' 9 2 'Structure model' '_citation.journal_volume' 10 2 'Structure model' '_citation.page_first' 11 2 'Structure model' '_citation.page_last' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 2 'Structure model' '_entity.formula_weight' 14 2 'Structure model' '_entity.pdbx_description' 15 2 'Structure model' '_entity.pdbx_ec' 16 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 17 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 18 2 'Structure model' '_exptl_crystal.density_Matthews' 19 2 'Structure model' '_exptl_crystal.density_percent_sol' 20 2 'Structure model' '_pdbx_struct_sheet_hbond.range_1_label_seq_id' 21 2 'Structure model' '_pdbx_struct_sheet_hbond.range_2_label_seq_id' 22 2 'Structure model' '_struct_conf.beg_label_seq_id' 23 2 'Structure model' '_struct_conf.end_label_seq_id' 24 2 'Structure model' '_struct_sheet_range.beg_label_seq_id' 25 2 'Structure model' '_struct_sheet_range.end_label_seq_id' 26 2 'Structure model' '_struct_site_gen.label_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 19.4751 _pdbx_refine_tls.origin_y 14.3498 _pdbx_refine_tls.origin_z 7.7579 _pdbx_refine_tls.T[1][1] 0.0494 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.1203 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.1401 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.0460 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0613 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] -0.1270 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.1845 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.3496 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.5703 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 7.0412 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 1.6999 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.3636 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.1857 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.3235 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.2060 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0785 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.5562 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.5095 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.2533 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.1072 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.3704 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 17 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 108 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details '{ A|17 - A|108 }' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.11.7 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? . 5 # _pdbx_entry_details.entry_id 7BIT _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 12 ? A GLY 1 2 1 Y 1 A PRO 13 ? A PRO 2 3 1 Y 1 A LEU 14 ? A LEU 3 4 1 Y 1 A GLY 15 ? A GLY 4 5 1 Y 1 A SER 16 ? A SER 5 6 1 Y 1 A VAL 109 ? A VAL 98 7 1 Y 1 A VAL 110 ? A VAL 99 8 1 Y 1 A ASN 111 ? A ASN 100 9 1 Y 1 A GLN 112 ? A GLN 101 10 1 Y 1 A GLN 113 ? A GLN 102 11 1 Y 1 A GLU 114 ? A GLU 103 12 1 Y 1 A SER 115 ? A SER 104 13 1 Y 1 A SER 116 ? A SER 105 14 1 Y 1 A ASP 117 ? A ASP 106 15 1 Y 1 A SER 118 ? A SER 107 16 1 Y 1 A GLY 119 ? A GLY 108 17 1 Y 1 A THR 120 ? A THR 109 18 1 Y 1 A SER 121 ? A SER 110 19 1 Y 1 A VAL 122 ? A VAL 111 20 1 Y 1 A SER 123 ? A SER 112 21 1 Y 1 A GLU 124 ? A GLU 113 22 1 Y 1 A ASN 125 ? A ASN 114 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id TV5 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id TV5 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 ;(3~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-3-(4-chlorophenyl)-4-fluoranyl-3-[(1-oxidanylcyclopropyl)methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one ; TV5 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #