HEADER ISOMERASE 14-JAN-21 7BJZ TITLE GLUCOSE ISOMERASE S171W IN H32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 1929; SOURCE 4 GENE: XYLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SLEUTEL REVDAT 3 31-JAN-24 7BJZ 1 JRNL REVDAT 2 07-JUL-21 7BJZ 1 JRNL REVDAT 1 16-JUN-21 7BJZ 0 JRNL AUTH A.E.S.VAN DRIESSCHE,N.VAN GERVEN,R.R.M.JOOSTEN,W.L.LING, JRNL AUTH 2 M.BACIA,N.SOMMERDIJK,M.SLEUTEL JRNL TITL NUCLEATION OF PROTEIN MESOCRYSTALS VIA ORIENTED ATTACHMENT. JRNL REF NAT COMMUN V. 12 3902 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34162863 JRNL DOI 10.1038/S41467-021-24171-Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.E.S.VAN DRIESSCHE,N.VAN GERVEN,R.R.M.JOOSTEN, REMARK 1 AUTH 2 A.J.M.SOMMERDIJK,M.SLEUTEL REMARK 1 TITL NONCLASSICAL NUCLEATION OF PROTEIN MESOCRYSTALS VIA ORIENTED REMARK 1 TITL 2 ATTACHMENT REMARK 1 REF BIORXIV 2020 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2020.08.27.267013 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2233 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3113 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6094 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -1.47000 REMARK 3 B12 (A**2) : 0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.256 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.080 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6258 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5666 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8474 ; 1.490 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13052 ; 1.299 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 772 ; 6.034 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 408 ;32.663 ;20.931 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 984 ;15.740 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;15.598 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 756 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7272 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1500 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3092 ; 3.588 ; 4.911 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3091 ; 3.582 ; 4.910 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3864 ; 4.768 ; 7.364 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3865 ; 4.768 ; 7.365 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3164 ; 4.080 ; 5.363 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3165 ; 4.080 ; 5.365 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4611 ; 5.926 ; 7.896 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6801 ; 7.388 ;56.832 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6802 ; 7.388 ;56.834 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 387 B 1 387 12687 0.03 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7BJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44769 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 55.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 9XIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MG.ML-1 50MM HEPES 7.0 100MM MGCL2 REMARK 280 8% (W/V) PEG1000, BATCH MODE, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 66.42500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.35049 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 78.28333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 66.42500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.35049 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 78.28333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 66.42500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.35049 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 78.28333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 66.42500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.35049 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.28333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 66.42500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.35049 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.28333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 66.42500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.35049 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.28333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.70098 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 156.56667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 76.70098 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 156.56667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 76.70098 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 156.56667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 76.70098 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 156.56667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 76.70098 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 156.56667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 76.70098 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 156.56667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 388 REMARK 465 MET B 1 REMARK 465 GLY B 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 94 -35.10 -134.06 REMARK 500 ASP A 175 56.19 -101.51 REMARK 500 GLU A 186 112.45 72.98 REMARK 500 ASN A 215 75.22 -114.96 REMARK 500 LYS A 253 -170.90 -172.99 REMARK 500 PHE A 357 -81.35 -158.57 REMARK 500 GLU A 359 33.48 -93.52 REMARK 500 TYR B 3 55.41 -107.26 REMARK 500 THR B 17 -72.09 -81.36 REMARK 500 PHE B 94 -34.25 -133.30 REMARK 500 ASP B 175 41.67 -96.92 REMARK 500 GLU B 186 108.13 73.27 REMARK 500 ASN B 215 77.02 -114.41 REMARK 500 LYS B 253 -172.75 -172.76 REMARK 500 TYR B 254 155.05 -48.51 REMARK 500 PHE B 357 -96.76 -149.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE1 REMARK 620 2 GLU A 217 OE2 82.5 REMARK 620 3 ASP A 245 OD2 103.0 87.7 REMARK 620 4 ASP A 287 OD2 150.3 92.3 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE1 REMARK 620 2 HIS A 220 NE2 73.9 REMARK 620 3 ASP A 255 OD1 106.3 95.7 REMARK 620 4 ASP A 255 OD2 154.2 107.8 48.2 REMARK 620 5 HOH A 510 O 96.3 77.2 153.5 109.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 181 OE1 REMARK 620 2 GLU B 217 OE2 84.3 REMARK 620 3 ASP B 245 OD2 95.8 87.9 REMARK 620 4 ASP B 287 OD2 162.2 98.1 101.9 REMARK 620 5 HOH B 501 O 85.4 169.6 92.1 92.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 217 OE1 REMARK 620 2 HIS B 220 NE2 75.1 REMARK 620 3 ASP B 255 OD2 147.8 104.1 REMARK 620 N 1 2 DBREF 7BJZ A 1 388 UNP P24300 XYLA_STRRU 1 388 DBREF 7BJZ B 1 388 UNP P24300 XYLA_STRRU 1 388 SEQADV 7BJZ GLN A 41 UNP P24300 ARG 41 ENGINEERED MUTATION SEQADV 7BJZ TRP A 171 UNP P24300 SER 171 ENGINEERED MUTATION SEQADV 7BJZ GLN B 41 UNP P24300 ARG 41 ENGINEERED MUTATION SEQADV 7BJZ TRP B 171 UNP P24300 SER 171 ENGINEERED MUTATION SEQRES 1 A 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 A 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 A 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 A 388 VAL GLN ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 A 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 A 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 A 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 A 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 A 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 A 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 A 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 A 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 A 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 A 388 THR TRP GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 A 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 A 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 A 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 A 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 A 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 A 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 A 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 A 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 A 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 A 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 A 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 A 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 A 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 A 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 A 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 A 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY SEQRES 1 B 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 B 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 B 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 B 388 VAL GLN ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 B 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 B 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 B 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 B 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 B 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 B 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 B 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 B 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 B 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 B 388 THR TRP GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 B 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 B 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 B 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 B 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 B 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 B 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 B 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 B 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 B 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 B 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 B 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 B 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 B 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 B 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 B 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 B 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY HET MN A 401 1 HET MN A 402 1 HET MN B 401 1 HET MN B 402 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 4(MN 2+) FORMUL 7 HOH *12(H2 O) HELIX 1 AA1 LEU A 15 GLY A 19 1 5 HELIX 2 AA2 ASP A 35 GLY A 47 1 13 HELIX 3 AA3 ASP A 55 ILE A 59 1 5 HELIX 4 AA4 SER A 64 GLY A 83 1 20 HELIX 5 AA5 HIS A 96 LYS A 100 5 5 HELIX 6 AA6 ASP A 108 LEU A 129 1 22 HELIX 7 AA7 SER A 145 LYS A 149 5 5 HELIX 8 AA8 ASP A 150 GLN A 172 1 23 HELIX 9 AA9 THR A 195 GLU A 204 1 10 HELIX 10 AB1 ARG A 208 GLU A 210 5 3 HELIX 11 AB2 GLU A 217 MET A 223 1 7 HELIX 12 AB3 ASN A 227 ALA A 238 1 12 HELIX 13 AB4 ASP A 264 ALA A 278 1 15 HELIX 14 AB5 ASP A 295 ASP A 323 1 29 HELIX 15 AB6 ASP A 323 SER A 333 1 11 HELIX 16 AB7 ARG A 334 ALA A 339 1 6 HELIX 17 AB8 ASP A 345 ASP A 353 1 9 HELIX 18 AB9 ARG A 354 PHE A 357 5 4 HELIX 19 AC1 ASP A 361 ALA A 367 1 7 HELIX 20 AC2 ALA A 371 GLY A 385 1 15 HELIX 21 AC3 THR B 6 ASP B 9 5 4 HELIX 22 AC4 LEU B 15 GLY B 19 1 5 HELIX 23 AC5 ASP B 35 LEU B 46 1 12 HELIX 24 AC6 HIS B 54 ILE B 59 1 6 HELIX 25 AC7 SER B 64 GLY B 83 1 20 HELIX 26 AC8 HIS B 96 LYS B 100 5 5 HELIX 27 AC9 ASP B 108 LEU B 129 1 22 HELIX 28 AD1 SER B 145 LYS B 149 5 5 HELIX 29 AD2 ASP B 150 GLN B 172 1 23 HELIX 30 AD3 THR B 195 GLU B 204 1 10 HELIX 31 AD4 ARG B 208 GLU B 210 5 3 HELIX 32 AD5 GLU B 217 MET B 223 1 7 HELIX 33 AD6 ASN B 227 ALA B 238 1 12 HELIX 34 AD7 ASP B 264 ALA B 278 1 15 HELIX 35 AD8 ASP B 295 ASP B 323 1 29 HELIX 36 AD9 ASP B 323 SER B 333 1 11 HELIX 37 AE1 ARG B 334 ALA B 339 1 6 HELIX 38 AE2 ASP B 345 ASP B 353 1 9 HELIX 39 AE3 ARG B 354 PHE B 357 5 4 HELIX 40 AE4 ASP B 361 ALA B 367 1 7 HELIX 41 AE5 ALA B 371 GLY B 385 1 15 SHEET 1 AA1 8 TYR A 212 VAL A 214 0 SHEET 2 AA1 8 ARG A 177 ILE A 180 1 N ILE A 180 O GLY A 213 SHEET 3 AA1 8 THR A 133 ALA A 136 1 N TYR A 134 O ARG A 177 SHEET 4 AA1 8 MET A 88 THR A 90 1 N ALA A 89 O VAL A 135 SHEET 5 AA1 8 GLY A 50 HIS A 54 1 N PHE A 53 O THR A 90 SHEET 6 AA1 8 PHE A 11 GLY A 14 1 N PHE A 13 O THR A 52 SHEET 7 AA1 8 ARG A 284 PHE A 286 1 O PHE A 286 N THR A 12 SHEET 8 AA1 8 ASP A 245 LEU A 246 1 N LEU A 246 O HIS A 285 SHEET 1 AA2 2 GLY A 142 ALA A 143 0 SHEET 2 AA2 2 ASP A 190 ILE A 191 -1 O ASP A 190 N ALA A 143 SHEET 1 AA3 4 GLY B 50 THR B 52 0 SHEET 2 AA3 4 PHE B 11 GLY B 14 1 O PHE B 11 N GLY B 50 SHEET 3 AA3 4 ARG B 284 PHE B 286 1 O PHE B 286 N THR B 12 SHEET 4 AA3 4 ASP B 245 LEU B 246 1 N LEU B 246 O HIS B 285 SHEET 1 AA4 4 MET B 88 THR B 90 0 SHEET 2 AA4 4 THR B 133 ALA B 136 1 O VAL B 135 N ALA B 89 SHEET 3 AA4 4 ARG B 177 ILE B 180 1 O ARG B 177 N TYR B 134 SHEET 4 AA4 4 TYR B 212 VAL B 214 1 O GLY B 213 N ILE B 180 SHEET 1 AA5 2 GLY B 142 ALA B 143 0 SHEET 2 AA5 2 ASP B 190 ILE B 191 -1 O ASP B 190 N ALA B 143 LINK OE1 GLU A 181 MN MN A 402 1555 1555 2.33 LINK OE1 GLU A 217 MN MN A 401 1555 1555 2.48 LINK OE2 GLU A 217 MN MN A 402 1555 1555 2.14 LINK NE2 HIS A 220 MN MN A 401 1555 1555 2.47 LINK OD2 ASP A 245 MN MN A 402 1555 1555 2.23 LINK OD1 ASP A 255 MN MN A 401 1555 1555 2.79 LINK OD2 ASP A 255 MN MN A 401 1555 1555 2.59 LINK OD2 ASP A 287 MN MN A 402 1555 1555 2.21 LINK MN MN A 401 O HOH A 510 1555 1555 2.58 LINK OE1 GLU B 181 MN MN B 402 1555 1555 2.32 LINK OE1 GLU B 217 MN MN B 401 1555 1555 2.42 LINK OE2 GLU B 217 MN MN B 402 1555 1555 2.00 LINK NE2 HIS B 220 MN MN B 401 1555 1555 2.48 LINK OD2 ASP B 245 MN MN B 402 1555 1555 2.40 LINK OD2 ASP B 255 MN MN B 401 1555 1555 2.65 LINK OD2 ASP B 287 MN MN B 402 1555 1555 2.16 LINK MN MN B 402 O HOH B 501 1555 1555 2.53 CISPEP 1 GLU A 186 PRO A 187 0 15.92 CISPEP 2 GLU B 186 PRO B 187 0 15.23 CRYST1 132.850 132.850 234.850 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007527 0.004346 0.000000 0.00000 SCALE2 0.000000 0.008692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004258 0.00000