HEADER TRANSCRIPTION 15-JAN-21 7BK4 TITLE CRYSTAL STRUCTURE OF RXRALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH A TITLE 2 FRAGMENT OF THE TIF2 COACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X COMPND 5 RECEPTOR ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, LIGAND BINDING DOMAIN, COACTIVATOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.LE MAIRE,W.BOURGUET REVDAT 2 31-JAN-24 7BK4 1 REMARK REVDAT 1 04-AUG-21 7BK4 0 JRNL AUTH L.SENICOURT,A.LE MAIRE,F.ALLEMAND,J.E.CARVALHO,L.GUEE, JRNL AUTH 2 P.GERMAIN,M.SCHUBERT,P.BERNADO,W.BOURGUET,N.SIBILLE JRNL TITL STRUCTURAL INSIGHTS INTO THE INTERACTION OF THE JRNL TITL 2 INTRINSICALLY DISORDERED CO-ACTIVATOR TIF2 WITH RETINOIC JRNL TITL 3 ACID RECEPTOR HETERODIMER (RXR/RAR). JRNL REF J.MOL.BIOL. V. 433 66899 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33647291 JRNL DOI 10.1016/J.JMB.2021.166899 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 13243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3100 - 6.7500 0.90 1582 131 0.2091 0.2752 REMARK 3 2 6.7400 - 5.3500 0.91 1612 125 0.2608 0.3127 REMARK 3 3 5.3500 - 4.6800 0.88 1585 120 0.2264 0.2278 REMARK 3 4 4.6800 - 4.2500 0.91 1546 174 0.2120 0.2379 REMARK 3 5 4.2500 - 3.9500 0.92 1575 167 0.2130 0.2089 REMARK 3 6 3.9500 - 3.7100 0.94 1648 131 0.2329 0.2349 REMARK 3 7 3.7100 - 3.5300 0.94 1642 131 0.2376 0.2372 REMARK 3 8 3.5300 - 3.3700 0.94 1651 139 0.2694 0.2653 REMARK 3 9 3.3700 - 3.2400 0.92 1580 141 0.2875 0.2994 REMARK 3 10 3.2400 - 3.1300 0.95 1738 140 0.2826 0.3461 REMARK 3 11 3.1300 - 3.0300 0.95 1679 123 0.2689 0.2424 REMARK 3 12 3.0300 - 2.9500 0.95 1654 151 0.2796 0.3267 REMARK 3 13 2.9500 - 2.8700 0.95 1680 122 0.2833 0.3361 REMARK 3 14 2.8700 - 2.8000 0.95 1654 163 0.2947 0.3243 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.349 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3780 REMARK 3 ANGLE : 1.372 5125 REMARK 3 CHIRALITY : 0.115 583 REMARK 3 PLANARITY : 0.007 644 REMARK 3 DIHEDRAL : 23.972 1413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6559 -18.9236 3.1223 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.4513 REMARK 3 T33: 0.3303 T12: -0.0740 REMARK 3 T13: 0.1593 T23: 0.1407 REMARK 3 L TENSOR REMARK 3 L11: 6.4069 L22: 0.6905 REMARK 3 L33: 1.8629 L12: -0.7302 REMARK 3 L13: 2.6935 L23: -0.1649 REMARK 3 S TENSOR REMARK 3 S11: -0.6754 S12: 0.3985 S13: -1.0424 REMARK 3 S21: -0.0147 S22: 0.3747 S23: -0.0325 REMARK 3 S31: -0.5353 S32: 0.2629 S33: 0.2505 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1405 -15.1010 24.6992 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.3489 REMARK 3 T33: 0.3815 T12: 0.0793 REMARK 3 T13: 0.1749 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 5.0040 L22: 5.4269 REMARK 3 L33: 5.5768 L12: -2.0973 REMARK 3 L13: 2.3670 L23: 0.1499 REMARK 3 S TENSOR REMARK 3 S11: -0.5307 S12: -0.0526 S13: 0.4164 REMARK 3 S21: -0.2409 S22: 0.0287 S23: -0.7706 REMARK 3 S31: 0.2593 S32: 0.2239 S33: 0.3057 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0753 -6.3068 7.0545 REMARK 3 T TENSOR REMARK 3 T11: 0.2464 T22: 0.1454 REMARK 3 T33: 0.2217 T12: -0.0279 REMARK 3 T13: 0.0832 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.8539 L22: 1.2384 REMARK 3 L33: 4.5928 L12: -0.7516 REMARK 3 L13: 0.8940 L23: 0.3593 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.0276 S13: -0.0357 REMARK 3 S21: -0.0336 S22: -0.0584 S23: -0.3594 REMARK 3 S31: 0.2469 S32: -0.0268 S33: 0.0280 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6174 -5.4500 20.8905 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.2465 REMARK 3 T33: 0.2443 T12: 0.0018 REMARK 3 T13: 0.1101 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.7210 L22: 0.4190 REMARK 3 L33: 1.8568 L12: 0.1200 REMARK 3 L13: 1.0753 L23: 0.2442 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: -0.1940 S13: -0.0386 REMARK 3 S21: 0.1116 S22: -0.0318 S23: 0.1950 REMARK 3 S31: 0.1988 S32: -0.1210 S33: 0.0336 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7548 -9.0066 0.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.1852 T22: 0.2776 REMARK 3 T33: 0.2202 T12: -0.0348 REMARK 3 T13: 0.0675 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.6914 L22: 2.8826 REMARK 3 L33: 3.6705 L12: 0.5075 REMARK 3 L13: -1.0634 L23: -0.3851 REMARK 3 S TENSOR REMARK 3 S11: 0.2552 S12: 0.0989 S13: -0.1198 REMARK 3 S21: 0.1090 S22: -0.1255 S23: 0.3173 REMARK 3 S31: 0.0005 S32: -0.1191 S33: -0.1508 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 441 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2917 2.1800 12.8963 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.1955 REMARK 3 T33: 0.2559 T12: 0.0218 REMARK 3 T13: 0.0642 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 2.4403 L22: 3.0179 REMARK 3 L33: 1.7682 L12: 1.6526 REMARK 3 L13: 0.9839 L23: 0.3339 REMARK 3 S TENSOR REMARK 3 S11: 0.2097 S12: 0.6617 S13: 0.2970 REMARK 3 S21: 0.8005 S22: 0.0348 S23: 0.1366 REMARK 3 S31: 0.1449 S32: 0.0133 S33: -0.0993 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 442 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6329 4.2909 11.7921 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.2838 REMARK 3 T33: 0.3843 T12: 0.0470 REMARK 3 T13: 0.0500 T23: -0.0681 REMARK 3 L TENSOR REMARK 3 L11: 2.0145 L22: 5.6081 REMARK 3 L33: 4.1344 L12: -1.2200 REMARK 3 L13: -2.0720 L23: 2.8648 REMARK 3 S TENSOR REMARK 3 S11: 0.3495 S12: 0.2023 S13: 0.2986 REMARK 3 S21: 0.2300 S22: 0.2690 S23: -1.1288 REMARK 3 S31: 0.0452 S32: 0.5436 S33: -0.3984 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 686 THROUGH 694 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0146 -3.1210 -0.9840 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.2725 REMARK 3 T33: 0.3495 T12: 0.0530 REMARK 3 T13: 0.1386 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 2.3027 L22: 3.2768 REMARK 3 L33: 5.7997 L12: 1.8132 REMARK 3 L13: 2.1136 L23: -1.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.1053 S12: 0.2631 S13: 0.3627 REMARK 3 S21: -0.5995 S22: 0.2016 S23: -0.2830 REMARK 3 S31: 0.0757 S32: 0.6992 S33: -0.1399 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 695 THROUGH 705 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9827 -12.9828 -11.0179 REMARK 3 T TENSOR REMARK 3 T11: 0.6222 T22: 0.2884 REMARK 3 T33: 0.4187 T12: 0.0634 REMARK 3 T13: 0.0278 T23: -0.0806 REMARK 3 L TENSOR REMARK 3 L11: 2.6593 L22: 4.9055 REMARK 3 L33: 3.0144 L12: 0.0515 REMARK 3 L13: 0.6117 L23: -2.2250 REMARK 3 S TENSOR REMARK 3 S11: -0.2217 S12: 0.4307 S13: -0.4193 REMARK 3 S21: 1.0243 S22: -0.1107 S23: -0.9289 REMARK 3 S31: 1.0264 S32: 0.3047 S33: 0.0628 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 229 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5024 17.5834 6.0021 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.3903 REMARK 3 T33: 0.4906 T12: -0.0193 REMARK 3 T13: 0.0052 T23: 0.1159 REMARK 3 L TENSOR REMARK 3 L11: 2.6926 L22: 1.8455 REMARK 3 L33: 1.2318 L12: 1.2418 REMARK 3 L13: -1.0132 L23: 0.3819 REMARK 3 S TENSOR REMARK 3 S11: 0.1418 S12: -0.0459 S13: 0.1930 REMARK 3 S21: 0.1806 S22: -0.0585 S23: 0.2422 REMARK 3 S31: -0.3233 S32: -0.6525 S33: 0.0182 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 286 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4675 15.1469 7.3436 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.3013 REMARK 3 T33: 0.3097 T12: 0.0017 REMARK 3 T13: 0.1155 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.5239 L22: 2.9573 REMARK 3 L33: 0.7674 L12: 0.3956 REMARK 3 L13: 1.2812 L23: 0.2078 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 0.0096 S13: 0.2007 REMARK 3 S21: 0.3062 S22: 0.0505 S23: 0.1112 REMARK 3 S31: -0.1008 S32: -0.0680 S33: -0.0487 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 331 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9536 12.5080 -3.5368 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.3920 REMARK 3 T33: 0.2744 T12: 0.0384 REMARK 3 T13: 0.0618 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 0.7699 L22: 3.0437 REMARK 3 L33: 0.2868 L12: 1.2816 REMARK 3 L13: 0.1817 L23: -0.2810 REMARK 3 S TENSOR REMARK 3 S11: -0.1448 S12: 0.2361 S13: 0.0771 REMARK 3 S21: -0.5426 S22: 0.1302 S23: -0.0778 REMARK 3 S31: 0.0932 S32: -0.0876 S33: -0.0167 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 376 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4446 -0.6297 10.2928 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.3191 REMARK 3 T33: 0.3553 T12: 0.0042 REMARK 3 T13: 0.1014 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 2.7539 L22: 3.7158 REMARK 3 L33: 6.5447 L12: 1.1863 REMARK 3 L13: 0.6515 L23: 2.2056 REMARK 3 S TENSOR REMARK 3 S11: 0.5012 S12: -0.4268 S13: -0.5228 REMARK 3 S21: 0.3119 S22: -0.4514 S23: 0.0467 REMARK 3 S31: 0.6023 S32: -0.8160 S33: 0.0672 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 414 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8746 12.1521 5.8512 REMARK 3 T TENSOR REMARK 3 T11: -0.0217 T22: 0.3415 REMARK 3 T33: 0.3097 T12: -0.0271 REMARK 3 T13: 0.2076 T23: 0.0635 REMARK 3 L TENSOR REMARK 3 L11: 0.4034 L22: 1.3593 REMARK 3 L33: 1.5833 L12: 0.9914 REMARK 3 L13: 0.2665 L23: 0.1343 REMARK 3 S TENSOR REMARK 3 S11: 0.4449 S12: 0.4555 S13: 0.1490 REMARK 3 S21: -0.0647 S22: -0.2815 S23: 0.1981 REMARK 3 S31: 0.3909 S32: 0.2869 S33: 0.1157 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 443 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6647 28.0535 12.6726 REMARK 3 T TENSOR REMARK 3 T11: 0.3347 T22: 0.4788 REMARK 3 T33: 0.4409 T12: 0.0928 REMARK 3 T13: 0.0657 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 7.8861 L22: 3.6657 REMARK 3 L33: 3.0619 L12: 0.7658 REMARK 3 L13: -0.7776 L23: 0.2742 REMARK 3 S TENSOR REMARK 3 S11: -0.3502 S12: -0.8137 S13: 1.0019 REMARK 3 S21: 0.2899 S22: 0.0971 S23: 0.0282 REMARK 3 S31: -0.1030 S32: 0.1478 S33: 0.2874 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 687 THROUGH 694 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6491 24.5844 20.4479 REMARK 3 T TENSOR REMARK 3 T11: 0.6858 T22: 0.5594 REMARK 3 T33: 0.6846 T12: 0.1091 REMARK 3 T13: 0.3214 T23: -0.0818 REMARK 3 L TENSOR REMARK 3 L11: 3.8045 L22: 4.4742 REMARK 3 L33: 1.8753 L12: -0.4734 REMARK 3 L13: 1.8188 L23: -0.6627 REMARK 3 S TENSOR REMARK 3 S11: -0.2713 S12: -0.8350 S13: 0.9260 REMARK 3 S21: 0.3361 S22: 0.5119 S23: -0.3763 REMARK 3 S31: 0.0242 S32: -0.1837 S33: -0.3592 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13251 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06860 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18660 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA HEPES, 0.2 M SODIUM ACETATE REMARK 280 PH 7.5, 27% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.56600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.32950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.56600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.32950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 219 REMARK 465 SER A 220 REMARK 465 HIS A 221 REMARK 465 MET A 222 REMARK 465 THR A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 ASN A 257 REMARK 465 PRO A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 ALA A 457 REMARK 465 PRO A 458 REMARK 465 HIS A 459 REMARK 465 GLN A 460 REMARK 465 MET A 461 REMARK 465 THR A 462 REMARK 465 LEU B 706 REMARK 465 THR B 707 REMARK 465 ALA B 708 REMARK 465 GLU B 709 REMARK 465 ALA B 710 REMARK 465 THR B 711 REMARK 465 GLY B 712 REMARK 465 LYS B 713 REMARK 465 GLY C 219 REMARK 465 SER C 220 REMARK 465 HIS C 221 REMARK 465 MET C 222 REMARK 465 THR C 223 REMARK 465 SER C 224 REMARK 465 SER C 225 REMARK 465 ALA C 226 REMARK 465 ASN C 227 REMARK 465 GLU C 228 REMARK 465 PRO C 244 REMARK 465 LYS C 245 REMARK 465 THR C 246 REMARK 465 GLU C 247 REMARK 465 THR C 248 REMARK 465 TYR C 249 REMARK 465 VAL C 250 REMARK 465 GLU C 251 REMARK 465 ALA C 252 REMARK 465 ASN C 253 REMARK 465 MET C 254 REMARK 465 GLY C 255 REMARK 465 LEU C 256 REMARK 465 ASN C 257 REMARK 465 PRO C 258 REMARK 465 SER C 259 REMARK 465 SER C 260 REMARK 465 PRO C 261 REMARK 465 ASN C 262 REMARK 465 PRO C 458 REMARK 465 HIS C 459 REMARK 465 GLN C 460 REMARK 465 MET C 461 REMARK 465 THR C 462 REMARK 465 LYS D 686 REMARK 465 GLN D 695 REMARK 465 ASP D 696 REMARK 465 SER D 697 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 465 PRO D 700 REMARK 465 VAL D 701 REMARK 465 ASP D 702 REMARK 465 LEU D 703 REMARK 465 ALA D 704 REMARK 465 LYS D 705 REMARK 465 LEU D 706 REMARK 465 THR D 707 REMARK 465 ALA D 708 REMARK 465 GLU D 709 REMARK 465 ALA D 710 REMARK 465 THR D 711 REMARK 465 GLY D 712 REMARK 465 LYS D 713 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 ASN A 262 CG OD1 ND2 REMARK 470 ASP A 359 CG OD1 OD2 REMARK 470 LEU A 441 CG CD1 CD2 REMARK 470 LYS B 686 CG CD CE NZ REMARK 470 ASP C 273 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 316 N ALA C 327 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 288 -7.97 79.28 REMARK 500 LEU A 353 -72.75 -102.95 REMARK 500 HIS C 288 -6.57 72.67 REMARK 500 ASN C 385 85.21 -169.66 REMARK 500 LYS D 688 -35.00 -130.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LG2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LG2 C 501 DBREF 7BK4 A 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 7BK4 B 686 713 UNP E7EWM1 E7EWM1_HUMAN 686 713 DBREF 7BK4 C 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 7BK4 D 686 713 UNP E7EWM1 E7EWM1_HUMAN 686 713 SEQADV 7BK4 GLY A 219 UNP P19793 EXPRESSION TAG SEQADV 7BK4 SER A 220 UNP P19793 EXPRESSION TAG SEQADV 7BK4 HIS A 221 UNP P19793 EXPRESSION TAG SEQADV 7BK4 MET A 222 UNP P19793 EXPRESSION TAG SEQADV 7BK4 GLY C 219 UNP P19793 EXPRESSION TAG SEQADV 7BK4 SER C 220 UNP P19793 EXPRESSION TAG SEQADV 7BK4 HIS C 221 UNP P19793 EXPRESSION TAG SEQADV 7BK4 MET C 222 UNP P19793 EXPRESSION TAG SEQRES 1 A 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 A 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 A 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 A 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 A 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 A 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 A 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 A 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 A 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 A 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 A 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 A 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 A 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 A 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 A 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 A 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 A 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 A 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 A 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 B 28 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 B 28 SER PRO VAL ASP LEU ALA LYS LEU THR ALA GLU ALA THR SEQRES 3 B 28 GLY LYS SEQRES 1 C 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 C 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 C 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 C 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 C 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 C 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 C 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 C 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 C 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 C 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 C 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 C 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 C 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 C 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 C 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 C 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 C 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 C 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 C 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 D 28 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 28 SER PRO VAL ASP LEU ALA LYS LEU THR ALA GLU ALA THR SEQRES 3 D 28 GLY LYS HET LG2 A 501 27 HET LG2 C 501 27 HETNAM LG2 6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8- HETNAM 2 LG2 TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3- HETNAM 3 LG2 CARBOXYLIC ACID FORMUL 5 LG2 2(C24 H29 N O2) FORMUL 7 HOH *69(H2 O) HELIX 1 AA1 PRO A 231 VAL A 242 1 12 HELIX 2 AA2 LYS A 245 MET A 254 1 10 HELIX 3 AA3 ASP A 263 ARG A 285 1 23 HELIX 4 AA4 HIS A 288 LEU A 292 5 5 HELIX 5 AA5 PRO A 293 SER A 317 1 25 HELIX 6 AA6 ARG A 334 ALA A 340 1 7 HELIX 7 AA7 VAL A 342 LEU A 353 1 12 HELIX 8 AA8 LEU A 353 GLN A 361 1 9 HELIX 9 AA9 ASP A 363 PHE A 376 1 14 HELIX 10 AB1 ASN A 385 TYR A 408 1 24 HELIX 11 AB2 GLY A 413 LEU A 420 1 8 HELIX 12 AB3 LEU A 420 ILE A 442 1 23 HELIX 13 AB4 ASP A 448 LEU A 455 1 8 HELIX 14 AB5 HIS B 687 LEU B 694 1 8 HELIX 15 AB6 PRO C 231 VAL C 242 1 12 HELIX 16 AB7 PRO C 264 LYS C 284 1 21 HELIX 17 AB8 HIS C 288 LEU C 292 5 5 HELIX 18 AB9 PRO C 293 SER C 317 1 25 HELIX 19 AC1 ARG C 334 SER C 339 1 6 HELIX 20 AC2 VAL C 342 LEU C 353 1 12 HELIX 21 AC3 LEU C 353 GLN C 361 1 9 HELIX 22 AC4 ASP C 363 PHE C 376 1 14 HELIX 23 AC5 ASN C 385 TYR C 408 1 24 HELIX 24 AC6 GLY C 413 LEU C 420 1 8 HELIX 25 AC7 ARG C 421 GLY C 443 1 23 HELIX 26 AC8 ASP C 448 GLU C 456 1 9 HELIX 27 AC9 LYS D 688 LEU D 694 1 7 SHEET 1 AA1 2 GLY A 323 LEU A 325 0 SHEET 2 AA1 2 HIS A 331 HIS A 333 -1 O VAL A 332 N ILE A 324 SHEET 1 AA2 2 GLY C 323 LEU C 325 0 SHEET 2 AA2 2 HIS C 331 HIS C 333 -1 O VAL C 332 N ILE C 324 SITE 1 AC1 9 ILE A 268 ALA A 271 ALA A 272 TRP A 305 SITE 2 AC1 9 LEU A 309 PHE A 313 ARG A 316 ALA A 327 SITE 3 AC1 9 LEU A 436 SITE 1 AC2 10 ILE C 268 ALA C 271 ALA C 272 LEU C 309 SITE 2 AC2 10 PHE C 313 ARG C 316 LEU C 326 ALA C 327 SITE 3 AC2 10 CYS C 432 HOH C 612 CRYST1 179.132 64.659 48.514 90.00 95.28 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005582 0.000000 0.000516 0.00000 SCALE2 0.000000 0.015466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020701 0.00000