HEADER IMMUNE SYSTEM 16-JAN-21 7BKP TITLE CRYOEM STRUCTURE OF DISEASE RELATED M854K MDA5-DSRNA FILAMENT IN TITLE 2 COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-INDUCED HELICASE C DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HELICASE WITH 2 CARD DOMAINS,HELICARD,INTERFERON INDUCED COMPND 5 WITH HELICASE C DOMAIN PROTEIN 1,MELANOMA DIFFERENTIATION-ASSOCIATED COMPND 6 PROTEIN 5,MDA-5,RIG-I-LIKE RECEPTOR 2,RLR-2; COMPND 7 EC: 3.6.4.13; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: ATP; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*G)-3'); COMPND 12 CHAIN: Z; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP*G)-3'); COMPND 16 CHAIN: X; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IFIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: PSEUDOMONAS VIRUS PHI6; SOURCE 12 ORGANISM_TAXID: 10879; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: PSEUDOMONAS VIRUS PHI6; SOURCE 16 ORGANISM_TAXID: 10879 KEYWDS PROTEIN-RNA COMPLEX, HELICAL FILAMENT, ATPASE, INNATE IMMUNE KEYWDS 2 RECEPTOR, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR R.SINGH,A.HERRERO DEL VALLE,Q.YU,Y.MODIS REVDAT 3 16-OCT-24 7BKP 1 REMARK REVDAT 2 01-DEC-21 7BKP 1 JRNL REVDAT 1 17-NOV-21 7BKP 0 JRNL AUTH Q.YU,A.HERRERO DEL VALLE,R.SINGH,Y.MODIS JRNL TITL MDA5 DISEASE VARIANT M854K PREVENTS ATP-DEPENDENT STRUCTURAL JRNL TITL 2 DISCRIMINATION OF VIRAL AND CELLULAR RNA. JRNL REF NAT COMMUN V. 12 6668 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34795277 JRNL DOI 10.1038/S41467-021-27062-5 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 PHENIX, RELION, RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6G19 REMARK 3 REFINEMENT SPACE : RECIPROCAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 50.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.800 REMARK 3 NUMBER OF PARTICLES : 383128 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7BKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113270. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : M854K MDA5-DSRNA FILAMENT IN REMARK 245 COMPLEX WITH ATP; INTERFERON- REMARK 245 INDUCED HELICASE C DOMAIN- REMARK 245 CONTAINING PROTEIN; RNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : MACHINE STEP 6 REMARK 245 SAMPLE VITRIFICATION DETAILS : GRIDS WERE BLOTTED FOR 3 S; REMARK 245 BLOT FORCE 10, 5, 0, -5, -10 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 7147 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : -1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : -2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : DARK FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 VAL A 4 REMARK 465 CYS A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 PHE A 11 REMARK 465 ARG A 12 REMARK 465 ASN A 13 REMARK 465 LEU A 14 REMARK 465 ILE A 15 REMARK 465 LEU A 16 REMARK 465 PHE A 17 REMARK 465 PHE A 18 REMARK 465 ARG A 19 REMARK 465 PRO A 20 REMARK 465 ARG A 21 REMARK 465 LEU A 22 REMARK 465 LYS A 23 REMARK 465 MET A 24 REMARK 465 TYR A 25 REMARK 465 ILE A 26 REMARK 465 GLN A 27 REMARK 465 VAL A 28 REMARK 465 GLU A 29 REMARK 465 PRO A 30 REMARK 465 VAL A 31 REMARK 465 LEU A 32 REMARK 465 ASP A 33 REMARK 465 HIS A 34 REMARK 465 LEU A 35 REMARK 465 ILE A 36 REMARK 465 PHE A 37 REMARK 465 LEU A 38 REMARK 465 SER A 39 REMARK 465 ALA A 40 REMARK 465 GLU A 41 REMARK 465 THR A 42 REMARK 465 LYS A 43 REMARK 465 GLU A 44 REMARK 465 GLN A 45 REMARK 465 ILE A 46 REMARK 465 LEU A 47 REMARK 465 LYS A 48 REMARK 465 LYS A 49 REMARK 465 ILE A 50 REMARK 465 ASN A 51 REMARK 465 THR A 52 REMARK 465 CYS A 53 REMARK 465 GLY A 54 REMARK 465 ASN A 55 REMARK 465 THR A 56 REMARK 465 SER A 57 REMARK 465 ALA A 58 REMARK 465 ALA A 59 REMARK 465 GLU A 60 REMARK 465 LEU A 61 REMARK 465 LEU A 62 REMARK 465 LEU A 63 REMARK 465 SER A 64 REMARK 465 THR A 65 REMARK 465 LEU A 66 REMARK 465 GLU A 67 REMARK 465 GLN A 68 REMARK 465 GLY A 69 REMARK 465 GLN A 70 REMARK 465 TRP A 71 REMARK 465 PRO A 72 REMARK 465 LEU A 73 REMARK 465 GLY A 74 REMARK 465 TRP A 75 REMARK 465 THR A 76 REMARK 465 GLN A 77 REMARK 465 MET A 78 REMARK 465 PHE A 79 REMARK 465 VAL A 80 REMARK 465 GLU A 81 REMARK 465 ALA A 82 REMARK 465 LEU A 83 REMARK 465 GLU A 84 REMARK 465 HIS A 85 REMARK 465 SER A 86 REMARK 465 GLY A 87 REMARK 465 ASN A 88 REMARK 465 PRO A 89 REMARK 465 LEU A 90 REMARK 465 ALA A 91 REMARK 465 ALA A 92 REMARK 465 ARG A 93 REMARK 465 TYR A 94 REMARK 465 VAL A 95 REMARK 465 LYS A 96 REMARK 465 PRO A 97 REMARK 465 THR A 98 REMARK 465 LEU A 99 REMARK 465 THR A 100 REMARK 465 ASP A 101 REMARK 465 LEU A 102 REMARK 465 PRO A 103 REMARK 465 SER A 104 REMARK 465 PRO A 105 REMARK 465 SER A 106 REMARK 465 SER A 107 REMARK 465 GLU A 108 REMARK 465 THR A 109 REMARK 465 ALA A 110 REMARK 465 HIS A 111 REMARK 465 ASP A 112 REMARK 465 GLU A 113 REMARK 465 CYS A 114 REMARK 465 LEU A 115 REMARK 465 HIS A 116 REMARK 465 LEU A 117 REMARK 465 LEU A 118 REMARK 465 THR A 119 REMARK 465 LEU A 120 REMARK 465 LEU A 121 REMARK 465 GLN A 122 REMARK 465 PRO A 123 REMARK 465 THR A 124 REMARK 465 LEU A 125 REMARK 465 VAL A 126 REMARK 465 ASP A 127 REMARK 465 LYS A 128 REMARK 465 LEU A 129 REMARK 465 LEU A 130 REMARK 465 ILE A 131 REMARK 465 ASN A 132 REMARK 465 ASP A 133 REMARK 465 VAL A 134 REMARK 465 LEU A 135 REMARK 465 ASP A 136 REMARK 465 THR A 137 REMARK 465 CYS A 138 REMARK 465 PHE A 139 REMARK 465 GLU A 140 REMARK 465 LYS A 141 REMARK 465 GLY A 142 REMARK 465 LEU A 143 REMARK 465 LEU A 144 REMARK 465 THR A 145 REMARK 465 VAL A 146 REMARK 465 GLU A 147 REMARK 465 ASP A 148 REMARK 465 ARG A 149 REMARK 465 ASN A 150 REMARK 465 ARG A 151 REMARK 465 ILE A 152 REMARK 465 SER A 153 REMARK 465 ALA A 154 REMARK 465 ALA A 155 REMARK 465 GLY A 156 REMARK 465 ASN A 157 REMARK 465 SER A 158 REMARK 465 GLY A 159 REMARK 465 ASN A 160 REMARK 465 GLU A 161 REMARK 465 SER A 162 REMARK 465 GLY A 163 REMARK 465 VAL A 164 REMARK 465 ARG A 165 REMARK 465 GLU A 166 REMARK 465 LEU A 167 REMARK 465 LEU A 168 REMARK 465 ARG A 169 REMARK 465 ARG A 170 REMARK 465 ILE A 171 REMARK 465 VAL A 172 REMARK 465 GLN A 173 REMARK 465 LYS A 174 REMARK 465 GLU A 175 REMARK 465 ASN A 176 REMARK 465 TRP A 177 REMARK 465 PHE A 178 REMARK 465 SER A 179 REMARK 465 THR A 180 REMARK 465 PHE A 181 REMARK 465 LEU A 182 REMARK 465 ASP A 183 REMARK 465 VAL A 184 REMARK 465 LEU A 185 REMARK 465 ARG A 186 REMARK 465 GLN A 187 REMARK 465 THR A 188 REMARK 465 GLY A 189 REMARK 465 ASN A 190 REMARK 465 ASP A 191 REMARK 465 ALA A 192 REMARK 465 LEU A 193 REMARK 465 PHE A 194 REMARK 465 GLN A 195 REMARK 465 GLU A 196 REMARK 465 LEU A 197 REMARK 465 THR A 198 REMARK 465 GLY A 199 REMARK 465 GLY A 200 REMARK 465 GLY A 201 REMARK 465 CYS A 202 REMARK 465 PRO A 203 REMARK 465 GLU A 204 REMARK 465 ASP A 205 REMARK 465 ASN A 206 REMARK 465 THR A 207 REMARK 465 ASP A 208 REMARK 465 LEU A 209 REMARK 465 ALA A 210 REMARK 465 ASN A 211 REMARK 465 SER A 212 REMARK 465 SER A 213 REMARK 465 HIS A 214 REMARK 465 ARG A 215 REMARK 465 ASP A 216 REMARK 465 GLY A 217 REMARK 465 PRO A 218 REMARK 465 ALA A 219 REMARK 465 ALA A 220 REMARK 465 ASN A 221 REMARK 465 GLU A 222 REMARK 465 CYS A 223 REMARK 465 LEU A 224 REMARK 465 LEU A 225 REMARK 465 PRO A 226 REMARK 465 ALA A 227 REMARK 465 VAL A 228 REMARK 465 ASP A 229 REMARK 465 GLU A 230 REMARK 465 SER A 231 REMARK 465 SER A 232 REMARK 465 LEU A 233 REMARK 465 GLU A 234 REMARK 465 THR A 235 REMARK 465 GLU A 236 REMARK 465 ALA A 237 REMARK 465 TRP A 238 REMARK 465 ASN A 239 REMARK 465 VAL A 240 REMARK 465 ASP A 241 REMARK 465 ASP A 242 REMARK 465 ILE A 243 REMARK 465 LEU A 244 REMARK 465 PRO A 245 REMARK 465 GLU A 246 REMARK 465 ALA A 247 REMARK 465 SER A 248 REMARK 465 CYS A 249 REMARK 465 THR A 250 REMARK 465 ASP A 251 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 VAL A 254 REMARK 465 THR A 255 REMARK 465 THR A 256 REMARK 465 GLU A 257 REMARK 465 SER A 258 REMARK 465 ASP A 259 REMARK 465 THR A 260 REMARK 465 SER A 261 REMARK 465 LEU A 262 REMARK 465 ALA A 263 REMARK 465 GLU A 264 REMARK 465 GLY A 265 REMARK 465 SER A 266 REMARK 465 VAL A 267 REMARK 465 SER A 268 REMARK 465 CYS A 269 REMARK 465 PHE A 270 REMARK 465 ASP A 271 REMARK 465 GLU A 272 REMARK 465 SER A 273 REMARK 465 LEU A 274 REMARK 465 GLY A 275 REMARK 465 HIS A 276 REMARK 465 ASN A 277 REMARK 465 SER A 278 REMARK 465 ASN A 279 REMARK 465 MET A 280 REMARK 465 GLY A 281 REMARK 465 ARG A 282 REMARK 465 ASP A 283 REMARK 465 SER A 284 REMARK 465 GLY A 285 REMARK 465 THR A 286 REMARK 465 MET A 287 REMARK 465 GLY A 288 REMARK 465 SER A 289 REMARK 465 ASP A 290 REMARK 465 SER A 291 REMARK 465 ASP A 292 REMARK 465 GLU A 293 REMARK 465 SER A 294 REMARK 465 VAL A 295 REMARK 465 ILE A 296 REMARK 465 GLN A 297 REMARK 465 THR A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 VAL A 301 REMARK 465 SER A 302 REMARK 465 PRO A 303 REMARK 465 GLU A 304 REMARK 465 PRO A 305 REMARK 465 GLU A 306 REMARK 465 ASP A 646 REMARK 465 LYS A 647 REMARK 465 SER A 648 REMARK 465 ASP A 649 REMARK 465 ASP A 650 REMARK 465 GLU A 651 REMARK 465 ALA A 652 REMARK 465 SER A 653 REMARK 465 SER A 654 REMARK 465 CYS A 655 REMARK 465 ASN A 656 REMARK 465 ASP A 657 REMARK 465 GLN A 658 REMARK 465 LEU A 659 REMARK 465 LYS A 660 REMARK 465 GLY A 661 REMARK 465 ASP A 662 REMARK 465 VAL A 663 REMARK 465 LYS A 664 REMARK 465 LYS A 665 REMARK 465 LYS A 894 REMARK 465 GLN A 895 REMARK 465 LYS A 950 REMARK 465 PHE A 951 REMARK 465 ALA A 952 REMARK 465 TYR A 1021 REMARK 465 SER A 1022 REMARK 465 ASP A 1023 REMARK 465 GLU A 1024 REMARK 465 ASP A 1025 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 696 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 954 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 392 -172.82 -172.24 REMARK 500 LYS A 451 -89.66 38.19 REMARK 500 LYS A 520 74.69 60.17 REMARK 500 ASN A 525 46.12 -87.36 REMARK 500 ARG A 547 -158.02 -151.25 REMARK 500 LYS A 597 -11.24 74.92 REMARK 500 GLU A 697 -73.15 -95.56 REMARK 500 ASN A 698 138.57 179.90 REMARK 500 SER A 718 44.79 -141.34 REMARK 500 HIS A 759 56.21 -97.79 REMARK 500 SER A 760 32.46 -143.89 REMARK 500 SER A 761 39.34 -140.72 REMARK 500 GLU A 762 -3.37 67.15 REMARK 500 THR A 790 2.63 -64.78 REMARK 500 TYR A 807 77.46 -100.46 REMARK 500 ARG A 824 -156.00 -90.83 REMARK 500 ALA A 825 77.60 69.16 REMARK 500 ASP A 826 147.66 -35.91 REMARK 500 GLU A 827 41.65 73.88 REMARK 500 THR A 956 -60.18 -106.41 REMARK 500 ASN A 957 77.06 -103.17 REMARK 500 LYS A1001 -11.93 71.85 REMARK 500 TYR A1018 -4.00 71.49 REMARK 500 CYS A1019 -168.07 -167.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 907 SG REMARK 620 2 CYS A 910 SG 92.3 REMARK 620 3 CYS A 962 SG 165.0 102.2 REMARK 620 4 CYS A 964 SG 100.1 58.8 84.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A1102 O3G REMARK 620 2 ATP A1102 O2B 56.6 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-12092 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-11937 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12213 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF DISEASE RELATED M854K MDA5-DSRNA FILAMENT IN REMARK 900 COMPLEX WITH ATP DBREF 7BKP A 1 1025 UNP Q8R5F7 IFIH1_MOUSE 1 1025 DBREF 7BKP Z 1 14 PDB 7BKP 7BKP 1 14 DBREF 7BKP X 1 14 PDB 7BKP 7BKP 1 14 SEQADV 7BKP LYS A 854 UNP Q8R5F7 MET 854 ENGINEERED MUTATION SEQRES 1 A 1025 MET SER ILE VAL CYS SER ALA GLU ASP SER PHE ARG ASN SEQRES 2 A 1025 LEU ILE LEU PHE PHE ARG PRO ARG LEU LYS MET TYR ILE SEQRES 3 A 1025 GLN VAL GLU PRO VAL LEU ASP HIS LEU ILE PHE LEU SER SEQRES 4 A 1025 ALA GLU THR LYS GLU GLN ILE LEU LYS LYS ILE ASN THR SEQRES 5 A 1025 CYS GLY ASN THR SER ALA ALA GLU LEU LEU LEU SER THR SEQRES 6 A 1025 LEU GLU GLN GLY GLN TRP PRO LEU GLY TRP THR GLN MET SEQRES 7 A 1025 PHE VAL GLU ALA LEU GLU HIS SER GLY ASN PRO LEU ALA SEQRES 8 A 1025 ALA ARG TYR VAL LYS PRO THR LEU THR ASP LEU PRO SER SEQRES 9 A 1025 PRO SER SER GLU THR ALA HIS ASP GLU CYS LEU HIS LEU SEQRES 10 A 1025 LEU THR LEU LEU GLN PRO THR LEU VAL ASP LYS LEU LEU SEQRES 11 A 1025 ILE ASN ASP VAL LEU ASP THR CYS PHE GLU LYS GLY LEU SEQRES 12 A 1025 LEU THR VAL GLU ASP ARG ASN ARG ILE SER ALA ALA GLY SEQRES 13 A 1025 ASN SER GLY ASN GLU SER GLY VAL ARG GLU LEU LEU ARG SEQRES 14 A 1025 ARG ILE VAL GLN LYS GLU ASN TRP PHE SER THR PHE LEU SEQRES 15 A 1025 ASP VAL LEU ARG GLN THR GLY ASN ASP ALA LEU PHE GLN SEQRES 16 A 1025 GLU LEU THR GLY GLY GLY CYS PRO GLU ASP ASN THR ASP SEQRES 17 A 1025 LEU ALA ASN SER SER HIS ARG ASP GLY PRO ALA ALA ASN SEQRES 18 A 1025 GLU CYS LEU LEU PRO ALA VAL ASP GLU SER SER LEU GLU SEQRES 19 A 1025 THR GLU ALA TRP ASN VAL ASP ASP ILE LEU PRO GLU ALA SEQRES 20 A 1025 SER CYS THR ASP SER SER VAL THR THR GLU SER ASP THR SEQRES 21 A 1025 SER LEU ALA GLU GLY SER VAL SER CYS PHE ASP GLU SER SEQRES 22 A 1025 LEU GLY HIS ASN SER ASN MET GLY ARG ASP SER GLY THR SEQRES 23 A 1025 MET GLY SER ASP SER ASP GLU SER VAL ILE GLN THR LYS SEQRES 24 A 1025 ARG VAL SER PRO GLU PRO GLU LEU GLN LEU ARG PRO TYR SEQRES 25 A 1025 GLN MET GLU VAL ALA GLN PRO ALA LEU ASP GLY LYS ASN SEQRES 26 A 1025 ILE ILE ILE CYS LEU PRO THR GLY SER GLY LYS THR ARG SEQRES 27 A 1025 VAL ALA VAL TYR ILE THR LYS ASP HIS LEU ASP LYS LYS SEQRES 28 A 1025 LYS GLN ALA SER GLU SER GLY LYS VAL ILE VAL LEU VAL SEQRES 29 A 1025 ASN LYS VAL MET LEU ALA GLU GLN LEU PHE ARG LYS GLU SEQRES 30 A 1025 PHE ASN PRO TYR LEU LYS LYS TRP TYR ARG ILE ILE GLY SEQRES 31 A 1025 LEU SER GLY ASP THR GLN LEU LYS ILE SER PHE PRO GLU SEQRES 32 A 1025 VAL VAL LYS SER TYR ASP VAL ILE ILE SER THR ALA GLN SEQRES 33 A 1025 ILE LEU GLU ASN SER LEU LEU ASN LEU GLU SER GLY ASP SEQRES 34 A 1025 ASP ASP GLY VAL GLN LEU SER ASP PHE SER LEU ILE ILE SEQRES 35 A 1025 ILE ASP GLU CYS HIS HIS THR ASN LYS GLU ALA VAL TYR SEQRES 36 A 1025 ASN ASN ILE MET ARG ARG TYR LEU LYS GLN LYS LEU ARG SEQRES 37 A 1025 ASN ASN ASP LEU LYS LYS GLN ASN LYS PRO ALA ILE PRO SEQRES 38 A 1025 LEU PRO GLN ILE LEU GLY LEU THR ALA SER PRO GLY VAL SEQRES 39 A 1025 GLY ALA ALA LYS LYS GLN SER GLU ALA GLU LYS HIS ILE SEQRES 40 A 1025 LEU ASN ILE CYS ALA ASN LEU ASP ALA PHE THR ILE LYS SEQRES 41 A 1025 THR VAL LYS GLU ASN LEU GLY GLN LEU LYS HIS GLN ILE SEQRES 42 A 1025 LYS GLU PRO CYS LYS LYS PHE VAL ILE ALA ASP ASP THR SEQRES 43 A 1025 ARG GLU ASN PRO PHE LYS GLU LYS LEU LEU GLU ILE MET SEQRES 44 A 1025 ALA SER ILE GLN THR TYR CYS GLN LYS SER PRO MET SER SEQRES 45 A 1025 ASP PHE GLY THR GLN HIS TYR GLU GLN TRP ALA ILE GLN SEQRES 46 A 1025 MET GLU LYS LYS ALA ALA LYS ASP GLY ASN ARG LYS ASP SEQRES 47 A 1025 ARG VAL CYS ALA GLU HIS LEU ARG LYS TYR ASN GLU ALA SEQRES 48 A 1025 LEU GLN ILE ASN ASP THR ILE ARG MET ILE ASP ALA TYR SEQRES 49 A 1025 SER HIS LEU GLU THR PHE TYR THR ASP GLU LYS GLU LYS SEQRES 50 A 1025 LYS PHE ALA VAL LEU ASN ASP SER ASP LYS SER ASP ASP SEQRES 51 A 1025 GLU ALA SER SER CYS ASN ASP GLN LEU LYS GLY ASP VAL SEQRES 52 A 1025 LYS LYS SER LEU LYS LEU ASP GLU THR ASP GLU PHE LEU SEQRES 53 A 1025 MET ASN LEU PHE PHE ASP ASN LYS LYS MET LEU LYS LYS SEQRES 54 A 1025 LEU ALA GLU ASN PRO LYS TYR GLU ASN GLU LYS LEU ILE SEQRES 55 A 1025 LYS LEU ARG ASN THR ILE LEU GLU GLN PHE THR ARG SER SEQRES 56 A 1025 GLU GLU SER SER ARG GLY ILE ILE PHE THR LYS THR ARG SEQRES 57 A 1025 GLN SER THR TYR ALA LEU SER GLN TRP ILE MET GLU ASN SEQRES 58 A 1025 ALA LYS PHE ALA GLU VAL GLY VAL LYS ALA HIS HIS LEU SEQRES 59 A 1025 ILE GLY ALA GLY HIS SER SER GLU VAL LYS PRO MET THR SEQRES 60 A 1025 GLN THR GLU GLN LYS GLU VAL ILE SER LYS PHE ARG THR SEQRES 61 A 1025 GLY GLU ILE ASN LEU LEU ILE ALA THR THR VAL ALA GLU SEQRES 62 A 1025 GLU GLY LEU ASP ILE LYS GLU CYS ASN ILE VAL ILE ARG SEQRES 63 A 1025 TYR GLY LEU VAL THR ASN GLU ILE ALA MET VAL GLN ALA SEQRES 64 A 1025 ARG GLY ARG ALA ARG ALA ASP GLU SER THR TYR VAL LEU SEQRES 65 A 1025 VAL THR SER SER GLY SER GLY VAL THR GLU ARG GLU ILE SEQRES 66 A 1025 VAL ASN ASP PHE ARG GLU LYS MET LYS TYR LYS ALA ILE SEQRES 67 A 1025 ASN ARG VAL GLN ASN MET LYS PRO GLU GLU TYR ALA HIS SEQRES 68 A 1025 LYS ILE LEU GLU LEU GLN VAL GLN SER ILE LEU GLU LYS SEQRES 69 A 1025 LYS MET LYS VAL LYS ARG SER ILE ALA LYS GLN TYR ASN SEQRES 70 A 1025 ASP ASN PRO SER LEU ILE THR LEU LEU CYS LYS ASN CYS SEQRES 71 A 1025 SER MET LEU VAL CYS SER GLY GLU ASN ILE HIS VAL ILE SEQRES 72 A 1025 GLU LYS MET HIS HIS VAL ASN MET THR PRO GLU PHE LYS SEQRES 73 A 1025 GLY LEU TYR ILE VAL ARG GLU ASN LYS ALA LEU GLN LYS SEQRES 74 A 1025 LYS PHE ALA ASP TYR GLN THR ASN GLY GLU ILE ILE CYS SEQRES 75 A 1025 LYS CYS GLY GLN ALA TRP GLY THR MET MET VAL HIS LYS SEQRES 76 A 1025 GLY LEU ASP LEU PRO CYS LEU LYS ILE ARG ASN PHE VAL SEQRES 77 A 1025 VAL ASN PHE LYS ASN ASN SER PRO LYS LYS GLN TYR LYS SEQRES 78 A 1025 LYS TRP VAL GLU LEU PRO ILE ARG PHE PRO ASP LEU ASP SEQRES 79 A 1025 TYR SER GLU TYR CYS LEU TYR SER ASP GLU ASP SEQRES 1 Z 14 C U C U C C U C G G C U U SEQRES 2 Z 14 G SEQRES 1 X 14 C A A G C C G A G G A G A SEQRES 2 X 14 G HET ZN A1101 1 HET ATP A1102 43 HET MG A1103 1 HETNAM ZN ZINC ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 ZN ZN 2+ FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 MG MG 2+ HELIX 1 AA1 ARG A 310 ASP A 322 1 13 HELIX 2 AA2 GLY A 335 ALA A 354 1 20 HELIX 3 AA3 LYS A 366 GLU A 377 1 12 HELIX 4 AA4 PHE A 378 LYS A 383 1 6 HELIX 5 AA5 GLN A 396 ILE A 399 5 4 HELIX 6 AA6 SER A 400 TYR A 408 1 9 HELIX 7 AA7 ALA A 415 SER A 427 1 13 HELIX 8 AA8 GLN A 434 PHE A 438 5 5 HELIX 9 AA9 GLU A 445 THR A 449 5 5 HELIX 10 AB1 ALA A 453 GLN A 475 1 23 HELIX 11 AB2 LYS A 499 LEU A 514 1 16 HELIX 12 AB3 ASN A 525 ILE A 533 1 9 HELIX 13 AB4 GLU A 548 TYR A 565 1 18 HELIX 14 AB5 THR A 576 GLY A 594 1 19 HELIX 15 AB6 ASP A 598 ILE A 618 1 21 HELIX 16 AB7 ARG A 619 ASN A 643 1 25 HELIX 17 AB8 ASP A 670 ASP A 682 1 13 HELIX 18 AB9 ASN A 683 GLU A 692 1 10 HELIX 19 AC1 ASN A 698 GLU A 716 1 19 HELIX 20 AC2 THR A 727 ASN A 741 1 15 HELIX 21 AC3 ASN A 741 GLY A 748 1 8 HELIX 22 AC4 THR A 767 GLY A 781 1 15 HELIX 23 AC5 THR A 790 GLU A 793 5 4 HELIX 24 AC6 ASN A 812 ARG A 822 1 11 HELIX 25 AC7 GLY A 839 ASN A 863 1 25 HELIX 26 AC8 LYS A 865 SER A 891 1 27 HELIX 27 AC9 ASN A 899 LEU A 902 5 4 HELIX 28 AD1 THR A 932 GLY A 937 1 6 HELIX 29 AD2 ASN A 944 LYS A 949 1 6 HELIX 30 AD3 LYS A 1002 LEU A 1006 5 5 SHEET 1 AA1 6 ILE A 326 CYS A 329 0 SHEET 2 AA1 6 GLN A 484 THR A 489 1 O GLY A 487 N ILE A 326 SHEET 3 AA1 6 LEU A 440 ILE A 443 1 N ILE A 441 O GLN A 484 SHEET 4 AA1 6 VAL A 360 VAL A 364 1 N LEU A 363 O ILE A 442 SHEET 5 AA1 6 VAL A 410 THR A 414 1 O SER A 413 N VAL A 362 SHEET 6 AA1 6 ILE A 388 GLY A 390 1 N ILE A 389 O VAL A 410 SHEET 1 AA2 6 CYS A 537 ALA A 543 0 SHEET 2 AA2 6 THR A 829 SER A 835 1 O TYR A 830 N CYS A 537 SHEET 3 AA2 6 ILE A 803 TYR A 807 1 N VAL A 804 O VAL A 831 SHEET 4 AA2 6 GLY A 721 PHE A 724 1 N PHE A 724 O ILE A 805 SHEET 5 AA2 6 LEU A 785 ALA A 788 1 O ALA A 788 N ILE A 723 SHEET 6 AA2 6 ALA A 751 LEU A 754 1 N LEU A 754 O ILE A 787 SHEET 1 AA3 3 LEU A 913 SER A 916 0 SHEET 2 AA3 3 THR A 904 CYS A 907 -1 N LEU A 905 O CYS A 915 SHEET 3 AA3 3 PHE A 987 ASN A 990 -1 O ASN A 990 N THR A 904 SHEET 1 AA4 2 ILE A 920 ILE A 923 0 SHEET 2 AA4 2 HIS A 927 ASN A 930 -1 O HIS A 927 N ILE A 923 SHEET 1 AA5 4 ILE A 940 VAL A 941 0 SHEET 2 AA5 4 GLU A 959 ILE A 961 -1 O ILE A 961 N ILE A 940 SHEET 3 AA5 4 ALA A 967 HIS A 974 -1 O TRP A 968 N ILE A 960 SHEET 4 AA5 4 LEU A 977 LEU A 982 -1 O CYS A 981 N THR A 970 SSBOND 1 CYS A 910 CYS A 964 1555 1555 2.25 LINK SG CYS A 907 ZN ZN A1101 1555 1555 2.39 LINK SG CYS A 910 ZN ZN A1101 1555 1555 2.27 LINK SG CYS A 962 ZN ZN A1101 1555 1555 2.36 LINK SG CYS A 964 ZN ZN A1101 1555 1555 2.31 LINK O3G ATP A1102 MG MG A1103 1555 1555 1.82 LINK O2B ATP A1102 MG MG A1103 1555 1555 2.37 CISPEP 1 LYS A 477 PRO A 478 0 0.37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000