HEADER DNA BINDING PROTEIN 19-JAN-21 7BM8 TITLE CRYSTAL STRUCTURE OF THE C-TERMINALLY TRUNCATED CHROMOSOME- TITLE 2 PARTITIONING PROTEIN PARB FROM CAULOBACTER CRESCENTUS COMPLEXED WITH TITLE 3 CTP-GAMMA-S COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOME-PARTITIONING PROTEIN PARB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE EXPRESSED PROTEIN COMPRISED RESIDUES 11-244 OF THE COMPND 6 WILD-TYPE SEQUENCE WITH A C-TERMINAL NICKEL AFFINITY TAG OF SEQUENCE COMPND 7 KLAAALEHHHHHH FROM THE PET21B EXPRESSION PLASMID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES (STRAIN NA1000 / CB15N); SOURCE 3 ORGANISM_TAXID: 565050; SOURCE 4 STRAIN: NA1000 / CB15N; SOURCE 5 GENE: PARB, CCNA_03868; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: SOLU KEYWDS CHROMOSOME SEGREGATION, CTP, MOLECULAR GATES, PROTEIN-DNA KEYWDS 2 RECOGNITION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.JALAL,N.T.TRAN,C.E.M.STEVENSON,D.M.LAWSON,T.B.K.LE REVDAT 3 31-JAN-24 7BM8 1 REMARK REVDAT 2 13-OCT-21 7BM8 1 JRNL REMARK REVDAT 1 28-APR-21 7BM8 0 JRNL AUTH A.S.JALAL,N.T.TRAN,C.E.STEVENSON,A.CHIMTHANAWALA, JRNL AUTH 2 A.BADRINARAYANAN,D.M.LAWSON,T.B.LE JRNL TITL A CTP-DEPENDENT GATING MECHANISM ENABLES PARB SPREADING ON JRNL TITL 2 DNA. JRNL REF ELIFE V. 10 2021 JRNL REFN ESSN 2050-084X JRNL PMID 34397383 JRNL DOI 10.7554/ELIFE.69676 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 13824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 678 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.79000 REMARK 3 B22 (A**2) : -6.21000 REMARK 3 B33 (A**2) : 12.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.661 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.351 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.384 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.471 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2756 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2521 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3743 ; 1.188 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5807 ; 1.105 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 4.889 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;25.973 ;21.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;15.528 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;11.403 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.033 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3126 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 546 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 42 221 B 42 221 5284 0.050 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE DENSITY DID NOT ALLOW THE UNAMBIGUOUS PLACEMENT OF THE GAMMA-S REMARK 3 OF CTP-GAMMA-S. THUS CTP WAS REFINED IN ITS PLACE. REMARK 4 REMARK 4 7BM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14516 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 70.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.19500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 1.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6T1F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.03800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 SER A 12 REMARK 465 GLU A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 VAL A 29 REMARK 465 ASP A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 GLN A 35 REMARK 465 ALA A 36 REMARK 465 PRO A 37 REMARK 465 GLY A 38 REMARK 465 GLU A 39 REMARK 465 GLN A 40 REMARK 465 LEU A 41 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 LEU A 224 REMARK 465 SER A 225 REMARK 465 VAL A 226 REMARK 465 ARG A 227 REMARK 465 GLU A 228 REMARK 465 THR A 229 REMARK 465 GLU A 230 REMARK 465 ALA A 231 REMARK 465 LEU A 232 REMARK 465 ALA A 233 REMARK 465 ARG A 234 REMARK 465 LYS A 235 REMARK 465 ALA A 236 REMARK 465 PRO A 237 REMARK 465 ASN A 238 REMARK 465 LEU A 239 REMARK 465 SER A 240 REMARK 465 ALA A 241 REMARK 465 GLY A 242 REMARK 465 LYS A 243 REMARK 465 SER A 244 REMARK 465 LYS A 245 REMARK 465 GLY A 246 REMARK 465 GLY A 247 REMARK 465 ARG A 248 REMARK 465 PRO A 249 REMARK 465 PRO A 250 REMARK 465 ARG A 251 REMARK 465 VAL A 252 REMARK 465 LYS A 253 REMARK 465 ASP A 254 REMARK 465 LYS A 255 REMARK 465 LEU A 256 REMARK 465 ALA A 257 REMARK 465 ALA A 258 REMARK 465 ALA A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 MET B 11 REMARK 465 SER B 12 REMARK 465 GLU B 13 REMARK 465 GLY B 14 REMARK 465 ARG B 15 REMARK 465 ARG B 16 REMARK 465 GLY B 17 REMARK 465 LEU B 18 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 GLY B 21 REMARK 465 LEU B 22 REMARK 465 SER B 23 REMARK 465 ALA B 24 REMARK 465 LEU B 25 REMARK 465 LEU B 26 REMARK 465 GLY B 27 REMARK 465 GLU B 28 REMARK 465 VAL B 29 REMARK 465 ASP B 30 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 34 REMARK 465 GLN B 35 REMARK 465 ALA B 36 REMARK 465 PRO B 37 REMARK 465 GLY B 38 REMARK 465 GLU B 39 REMARK 465 GLN B 40 REMARK 465 LEU B 41 REMARK 465 GLY B 222 REMARK 465 GLY B 223 REMARK 465 LEU B 224 REMARK 465 SER B 225 REMARK 465 VAL B 226 REMARK 465 ARG B 227 REMARK 465 GLU B 228 REMARK 465 THR B 229 REMARK 465 GLU B 230 REMARK 465 ALA B 231 REMARK 465 LEU B 232 REMARK 465 ALA B 233 REMARK 465 ARG B 234 REMARK 465 LYS B 235 REMARK 465 ALA B 236 REMARK 465 PRO B 237 REMARK 465 ASN B 238 REMARK 465 LEU B 239 REMARK 465 SER B 240 REMARK 465 ALA B 241 REMARK 465 GLY B 242 REMARK 465 LYS B 243 REMARK 465 SER B 244 REMARK 465 LYS B 245 REMARK 465 GLY B 246 REMARK 465 GLY B 247 REMARK 465 ARG B 248 REMARK 465 PRO B 249 REMARK 465 PRO B 250 REMARK 465 ARG B 251 REMARK 465 VAL B 252 REMARK 465 LYS B 253 REMARK 465 ASP B 254 REMARK 465 LYS B 255 REMARK 465 LEU B 256 REMARK 465 ALA B 257 REMARK 465 ALA B 258 REMARK 465 ALA B 259 REMARK 465 LEU B 260 REMARK 465 GLU B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 SER A 191 OG REMARK 470 TYR A 192 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 194 CG1 CG2 REMARK 470 SER A 195 OG REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 LEU A 198 CG CD1 CD2 REMARK 470 THR A 199 OG1 CG2 REMARK 470 HIS A 202 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 206 CG1 CG2 CD1 REMARK 470 VAL A 213 CG1 CG2 REMARK 470 LEU A 215 CG CD1 CD2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 GLN A 218 CG CD OE1 NE2 REMARK 470 ILE A 219 CG1 CG2 CD1 REMARK 470 ILE A 220 CG1 CG2 CD1 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 185 CG CD1 CD2 REMARK 470 GLU B 188 CG CD OE1 OE2 REMARK 470 SER B 191 OG REMARK 470 TYR B 192 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL B 194 CG1 CG2 REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 LEU B 198 CG CD1 CD2 REMARK 470 THR B 199 OG1 CG2 REMARK 470 HIS B 202 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 204 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 206 CG1 CG2 CD1 REMARK 470 VAL B 213 CG1 CG2 REMARK 470 LEU B 215 CG CD1 CD2 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 GLN B 218 CG CD OE1 NE2 REMARK 470 ILE B 219 CG1 CG2 CD1 REMARK 470 ILE B 220 CG1 CG2 CD1 REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 35.14 -93.48 REMARK 500 GLU A 77 -76.98 -74.34 REMARK 500 ASP B 57 35.21 -93.64 REMARK 500 GLU B 77 -76.68 -74.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 135 OE1 REMARK 620 2 GLU A 135 OE2 50.9 REMARK 620 3 ASN A 136 OD1 84.6 82.3 REMARK 620 4 CTP A 301 O1A 153.1 146.8 80.7 REMARK 620 5 CTP A 301 O2B 108.7 102.1 165.9 88.7 REMARK 620 6 CTP A 301 O2G 118.4 67.5 86.9 83.3 82.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 135 OE1 REMARK 620 2 GLU B 135 OE2 51.1 REMARK 620 3 ASN B 136 OD1 84.4 82.7 REMARK 620 4 CTP B 301 O1A 152.5 147.8 81.2 REMARK 620 5 CTP B 301 O2B 107.3 101.2 167.5 89.6 REMARK 620 6 CTP B 301 O3G 120.3 69.1 88.9 82.8 81.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6T1F RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH DNA DBREF 7BM8 A 11 254 UNP B8GW30 PARB_CAUVN 11 254 DBREF 7BM8 B 11 254 UNP B8GW30 PARB_CAUVN 11 254 SEQADV 7BM8 LYS A 255 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 LEU A 256 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 ALA A 257 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 ALA A 258 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 ALA A 259 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 LEU A 260 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 GLU A 261 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS A 262 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS A 263 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS A 264 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS A 265 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS A 266 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS A 267 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 LYS B 255 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 LEU B 256 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 ALA B 257 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 ALA B 258 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 ALA B 259 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 LEU B 260 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 GLU B 261 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS B 262 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS B 263 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS B 264 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS B 265 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS B 266 UNP B8GW30 EXPRESSION TAG SEQADV 7BM8 HIS B 267 UNP B8GW30 EXPRESSION TAG SEQRES 1 A 257 MET SER GLU GLY ARG ARG GLY LEU GLY ARG GLY LEU SER SEQRES 2 A 257 ALA LEU LEU GLY GLU VAL ASP ALA ALA PRO ALA GLN ALA SEQRES 3 A 257 PRO GLY GLU GLN LEU GLY GLY SER ARG GLU ALA PRO ILE SEQRES 4 A 257 GLU ILE LEU GLN ARG ASN PRO ASP GLN PRO ARG ARG THR SEQRES 5 A 257 PHE ARG GLU GLU ASP LEU GLU ASP LEU SER ASN SER ILE SEQRES 6 A 257 ARG GLU LYS GLY VAL LEU GLN PRO ILE LEU VAL ARG PRO SEQRES 7 A 257 SER PRO ASP THR ALA GLY GLU TYR GLN ILE VAL ALA GLY SEQRES 8 A 257 GLU ARG ARG TRP ARG ALA ALA GLN ARG ALA GLY LEU LYS SEQRES 9 A 257 THR VAL PRO ILE MET VAL ARG GLU LEU ASP ASP LEU ALA SEQRES 10 A 257 VAL LEU GLU ILE GLY ILE ILE GLU ASN VAL GLN ARG ALA SEQRES 11 A 257 ASP LEU ASN VAL LEU GLU GLU ALA LEU SER TYR LYS VAL SEQRES 12 A 257 LEU MET GLU LYS PHE GLU ARG THR GLN GLU ASN ILE ALA SEQRES 13 A 257 GLN THR ILE GLY LYS SER ARG SER HIS VAL ALA ASN THR SEQRES 14 A 257 MET ARG LEU LEU ALA LEU PRO ASP GLU VAL GLN SER TYR SEQRES 15 A 257 LEU VAL SER GLY GLU LEU THR ALA GLY HIS ALA ARG ALA SEQRES 16 A 257 ILE ALA ALA ALA ALA ASP PRO VAL ALA LEU ALA LYS GLN SEQRES 17 A 257 ILE ILE GLU GLY GLY LEU SER VAL ARG GLU THR GLU ALA SEQRES 18 A 257 LEU ALA ARG LYS ALA PRO ASN LEU SER ALA GLY LYS SER SEQRES 19 A 257 LYS GLY GLY ARG PRO PRO ARG VAL LYS ASP LYS LEU ALA SEQRES 20 A 257 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 257 MET SER GLU GLY ARG ARG GLY LEU GLY ARG GLY LEU SER SEQRES 2 B 257 ALA LEU LEU GLY GLU VAL ASP ALA ALA PRO ALA GLN ALA SEQRES 3 B 257 PRO GLY GLU GLN LEU GLY GLY SER ARG GLU ALA PRO ILE SEQRES 4 B 257 GLU ILE LEU GLN ARG ASN PRO ASP GLN PRO ARG ARG THR SEQRES 5 B 257 PHE ARG GLU GLU ASP LEU GLU ASP LEU SER ASN SER ILE SEQRES 6 B 257 ARG GLU LYS GLY VAL LEU GLN PRO ILE LEU VAL ARG PRO SEQRES 7 B 257 SER PRO ASP THR ALA GLY GLU TYR GLN ILE VAL ALA GLY SEQRES 8 B 257 GLU ARG ARG TRP ARG ALA ALA GLN ARG ALA GLY LEU LYS SEQRES 9 B 257 THR VAL PRO ILE MET VAL ARG GLU LEU ASP ASP LEU ALA SEQRES 10 B 257 VAL LEU GLU ILE GLY ILE ILE GLU ASN VAL GLN ARG ALA SEQRES 11 B 257 ASP LEU ASN VAL LEU GLU GLU ALA LEU SER TYR LYS VAL SEQRES 12 B 257 LEU MET GLU LYS PHE GLU ARG THR GLN GLU ASN ILE ALA SEQRES 13 B 257 GLN THR ILE GLY LYS SER ARG SER HIS VAL ALA ASN THR SEQRES 14 B 257 MET ARG LEU LEU ALA LEU PRO ASP GLU VAL GLN SER TYR SEQRES 15 B 257 LEU VAL SER GLY GLU LEU THR ALA GLY HIS ALA ARG ALA SEQRES 16 B 257 ILE ALA ALA ALA ALA ASP PRO VAL ALA LEU ALA LYS GLN SEQRES 17 B 257 ILE ILE GLU GLY GLY LEU SER VAL ARG GLU THR GLU ALA SEQRES 18 B 257 LEU ALA ARG LYS ALA PRO ASN LEU SER ALA GLY LYS SER SEQRES 19 B 257 LYS GLY GLY ARG PRO PRO ARG VAL LYS ASP LYS LEU ALA SEQRES 20 B 257 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET CTP A 301 29 HET MG A 302 1 HET CTP B 301 29 HET MG B 302 1 HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 CTP 2(C9 H16 N3 O14 P3) FORMUL 4 MG 2(MG 2+) HELIX 1 AA1 ARG A 64 GLY A 79 1 16 HELIX 2 AA2 GLY A 101 ALA A 111 1 11 HELIX 3 AA3 ASP A 124 GLN A 138 1 15 HELIX 4 AA4 ASN A 143 GLU A 159 1 17 HELIX 5 AA5 THR A 161 GLY A 170 1 10 HELIX 6 AA6 SER A 172 LEU A 182 1 11 HELIX 7 AA7 PRO A 186 GLY A 196 1 11 HELIX 8 AA8 THR A 199 ALA A 209 1 11 HELIX 9 AA9 ALA A 214 ILE A 219 1 6 HELIX 10 AB1 ARG B 64 GLY B 79 1 16 HELIX 11 AB2 GLY B 101 ALA B 111 1 11 HELIX 12 AB3 ASP B 124 GLN B 138 1 15 HELIX 13 AB4 ASN B 143 GLU B 159 1 17 HELIX 14 AB5 THR B 161 GLY B 170 1 10 HELIX 15 AB6 SER B 172 LEU B 182 1 11 HELIX 16 AB7 PRO B 186 GLY B 196 1 11 HELIX 17 AB8 THR B 199 ALA B 209 1 11 HELIX 18 AB9 ALA B 214 ILE B 219 1 6 SHEET 1 AA1 5 ARG A 45 PRO A 48 0 SHEET 2 AA1 5 THR A 115 VAL A 120 -1 O ILE A 118 N ARG A 45 SHEET 3 AA1 5 ILE A 84 PRO A 88 1 N ILE A 84 O PRO A 117 SHEET 4 AA1 5 TYR A 96 ALA A 100 -1 O GLN A 97 N ARG A 87 SHEET 5 AA1 5 LEU A 52 ARG A 54 1 N GLN A 53 O ILE A 98 SHEET 1 AA2 5 ARG B 45 PRO B 48 0 SHEET 2 AA2 5 THR B 115 VAL B 120 -1 O ILE B 118 N ARG B 45 SHEET 3 AA2 5 ILE B 84 PRO B 88 1 N ILE B 84 O PRO B 117 SHEET 4 AA2 5 TYR B 96 ALA B 100 -1 O GLN B 97 N ARG B 87 SHEET 5 AA2 5 LEU B 52 ARG B 54 1 N GLN B 53 O ILE B 98 LINK OE1 GLU A 135 MG MG A 302 1555 1555 2.08 LINK OE2 GLU A 135 MG MG A 302 1555 1555 2.81 LINK OD1 ASN A 136 MG MG A 302 1555 1555 2.09 LINK O1A CTP A 301 MG MG A 302 1555 1555 2.08 LINK O2B CTP A 301 MG MG A 302 1555 1555 2.09 LINK O2G CTP A 301 MG MG A 302 1555 1555 2.09 LINK OE1 GLU B 135 MG MG B 302 1555 1555 2.08 LINK OE2 GLU B 135 MG MG B 302 1555 1555 2.80 LINK OD1 ASN B 136 MG MG B 302 1555 1555 2.09 LINK O1A CTP B 301 MG MG B 302 1555 1555 2.09 LINK O2B CTP B 301 MG MG B 302 1555 1555 2.09 LINK O3G CTP B 301 MG MG B 302 1555 1555 2.09 CRYST1 69.461 56.076 71.360 90.00 98.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014397 0.000000 0.002126 0.00000 SCALE2 0.000000 0.017833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014165 0.00000