HEADER MEMBRANE PROTEIN 20-JAN-21 7BMH TITLE CRYSTAL STRUCTURE OF A LIGHT-DRIVEN PROTON PUMP LR (MAC) FROM TITLE 2 LEPTOSPHAERIA MACULANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OPSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BACTERIORHODOPSIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPHAERIA MACULANS; SOURCE 3 ORGANISM_COMMON: BLACKLEG FUNGUS; SOURCE 4 ORGANISM_TAXID: 5022; SOURCE 5 GENE: OPS; SOURCE 6 EXPRESSION_SYSTEM: LEISHMANIA TARENTOLAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 5689 KEYWDS RHODOPSIN, BACTERIORHODOPSIN, RETINAL, OPTOGENETICS, PROTON PUMP, KEYWDS 2 PHOTOCYCLE, EUKARYOTIC RHODOPSIN, ION TRANSPORT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KOVALEV,D.ZABELSKII,N.DMITRIEVA,O.VOLKOV,V.SHEVCHENKO,R.ASTASHKIN, AUTHOR 2 E.ZINOVEV,V.GORDELIY REVDAT 3 31-JAN-24 7BMH 1 REMARK REVDAT 2 14-JUL-21 7BMH 1 JRNL REVDAT 1 07-JUL-21 7BMH 0 JRNL AUTH D.ZABELSKII,N.DMITRIEVA,O.VOLKOV,V.SHEVCHENKO,K.KOVALEV, JRNL AUTH 2 T.BALANDIN,D.SOLOVIOV,R.ASTASHKIN,E.ZINOVEV,A.ALEKSEEV, JRNL AUTH 3 E.ROUND,V.POLOVINKIN,I.CHIZHOV,A.ROGACHEV,I.OKHRIMENKO, JRNL AUTH 4 V.BORSHCHEVSKIY,V.CHUPIN,G.BULDT,N.YUTIN,E.BAMBERG,E.KOONIN, JRNL AUTH 5 V.GORDELIY JRNL TITL STRUCTURE-BASED INSIGHTS INTO EVOLUTION OF RHODOPSINS. JRNL REF COMMUN BIOL V. 4 821 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 34193947 JRNL DOI 10.1038/S42003-021-02326-4 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 34340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9200 - 5.0100 0.98 2850 157 0.2647 0.2656 REMARK 3 2 5.0100 - 3.9900 1.00 2780 147 0.2045 0.2501 REMARK 3 3 3.9900 - 3.4900 0.99 2769 133 0.2085 0.3121 REMARK 3 4 3.4900 - 3.1700 0.99 2699 139 0.2236 0.2937 REMARK 3 5 3.1700 - 2.9400 0.99 2714 147 0.2152 0.2852 REMARK 3 6 2.9400 - 2.7700 0.99 2720 121 0.2254 0.2290 REMARK 3 7 2.7700 - 2.6300 0.99 2717 128 0.2259 0.3089 REMARK 3 8 2.6300 - 2.5200 0.99 2673 140 0.2397 0.3360 REMARK 3 9 2.5200 - 2.4200 0.99 2709 132 0.2680 0.2722 REMARK 3 10 2.4200 - 2.3400 1.00 2695 138 0.2855 0.3475 REMARK 3 11 2.3400 - 2.2600 0.99 2683 127 0.3001 0.3609 REMARK 3 12 2.2600 - 2.2000 0.99 2693 129 0.3272 0.3332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34762 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.17200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.95500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1C3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 4% PEG 3350, 1 M REMARK 280 SODIUM MALONATE PH 7.0, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.01000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.01000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 PHE A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 10 REMARK 465 MET A 11 REMARK 465 LYS A 12 REMARK 465 THR A 13 REMARK 465 SER A 14 REMARK 465 GLN A 15 REMARK 465 LEU A 16 REMARK 465 PHE A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 GLN A 24 REMARK 465 SER A 25 REMARK 465 ALA A 26 REMARK 465 GLN A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 HIS A 30 REMARK 465 VAL A 31 REMARK 465 ALA A 32 REMARK 465 PRO A 33 REMARK 465 VAL A 34 REMARK 465 PRO A 35 REMARK 465 THR A 36 REMARK 465 VAL A 37 REMARK 465 LEU A 38 REMARK 465 PRO A 39 REMARK 465 ASP A 40 REMARK 465 THR A 41 REMARK 465 VAL A 289 REMARK 465 GLU A 290 REMARK 465 LEU A 291 REMARK 465 ASN A 292 REMARK 465 GLY A 293 REMARK 465 PHE A 294 REMARK 465 TRP A 295 REMARK 465 ALA A 296 REMARK 465 ASN A 297 REMARK 465 GLY A 298 REMARK 465 LEU A 299 REMARK 465 ASN A 300 REMARK 465 ARG A 301 REMARK 465 GLU A 302 REMARK 465 GLY A 303 REMARK 465 ALA A 304 REMARK 465 ILE A 305 REMARK 465 ARG A 306 REMARK 465 ILE A 307 REMARK 465 GLY A 308 REMARK 465 GLU A 309 REMARK 465 ASP A 310 REMARK 465 ASP A 311 REMARK 465 GLY A 312 REMARK 465 ALA A 313 REMARK 465 GLY A 314 REMARK 465 THR A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 VAL B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 5 REMARK 465 PHE B 6 REMARK 465 GLU B 7 REMARK 465 GLU B 8 REMARK 465 VAL B 9 REMARK 465 LEU B 10 REMARK 465 MET B 11 REMARK 465 LYS B 12 REMARK 465 THR B 13 REMARK 465 SER B 14 REMARK 465 GLN B 15 REMARK 465 LEU B 16 REMARK 465 PHE B 17 REMARK 465 PRO B 18 REMARK 465 LEU B 19 REMARK 465 PRO B 20 REMARK 465 THR B 21 REMARK 465 ALA B 22 REMARK 465 THR B 23 REMARK 465 GLN B 24 REMARK 465 SER B 25 REMARK 465 ALA B 26 REMARK 465 GLN B 27 REMARK 465 PRO B 28 REMARK 465 THR B 29 REMARK 465 HIS B 30 REMARK 465 VAL B 31 REMARK 465 ALA B 32 REMARK 465 PRO B 33 REMARK 465 VAL B 34 REMARK 465 PRO B 35 REMARK 465 THR B 36 REMARK 465 VAL B 37 REMARK 465 LEU B 38 REMARK 465 PRO B 39 REMARK 465 ASP B 40 REMARK 465 THR B 41 REMARK 465 ASP B 119 REMARK 465 HIS B 120 REMARK 465 VAL B 121 REMARK 465 PRO B 122 REMARK 465 ARG B 285 REMARK 465 GLU B 286 REMARK 465 SER B 287 REMARK 465 ASP B 288 REMARK 465 VAL B 289 REMARK 465 GLU B 290 REMARK 465 LEU B 291 REMARK 465 ASN B 292 REMARK 465 GLY B 293 REMARK 465 PHE B 294 REMARK 465 TRP B 295 REMARK 465 ALA B 296 REMARK 465 ASN B 297 REMARK 465 GLY B 298 REMARK 465 LEU B 299 REMARK 465 ASN B 300 REMARK 465 ARG B 301 REMARK 465 GLU B 302 REMARK 465 GLY B 303 REMARK 465 ALA B 304 REMARK 465 ILE B 305 REMARK 465 ARG B 306 REMARK 465 ILE B 307 REMARK 465 GLY B 308 REMARK 465 GLU B 309 REMARK 465 ASP B 310 REMARK 465 ASP B 311 REMARK 465 GLY B 312 REMARK 465 ALA B 313 REMARK 465 GLY B 314 REMARK 465 THR B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 43 CG1 CG2 CD1 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 111 CE NZ REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 ASP A 119 CG OD1 OD2 REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 GLU A 126 CD OE1 OE2 REMARK 470 GLN A 188 CG CD OE1 NE2 REMARK 470 ARG A 216 NE CZ NH1 NH2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 LYS A 252 CD CE NZ REMARK 470 ASN A 283 CG OD1 ND2 REMARK 470 ARG A 285 NE CZ NH1 NH2 REMARK 470 ASP A 288 CG OD1 OD2 REMARK 470 ILE B 43 CG1 CG2 CD1 REMARK 470 SER B 50 OG REMARK 470 LYS B 53 CE NZ REMARK 470 LYS B 75 CE NZ REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 113 CG1 CG2 REMARK 470 ILE B 114 CG1 CG2 CD1 REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 117 CG CD OE1 NE2 REMARK 470 HIS B 118 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 124 OG1 CG2 REMARK 470 TYR B 125 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 GLN B 188 CG CD OE1 NE2 REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 220 CG CD OE1 OE2 REMARK 470 LYS B 221 CE NZ REMARK 470 LYS B 252 CD CE NZ REMARK 470 ASN B 283 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYR B 270 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 247 -86.19 -91.56 REMARK 500 ALA B 247 -89.27 -92.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 401 REMARK 610 OLA A 402 REMARK 610 LFA A 403 REMARK 610 LFA A 404 REMARK 610 LFA A 405 REMARK 610 LFA A 406 REMARK 610 LFA A 407 REMARK 610 LFA A 408 REMARK 610 LFA A 409 REMARK 610 LFA A 410 REMARK 610 LFA A 411 REMARK 610 OLA A 412 REMARK 610 OLA A 413 REMARK 610 LFA A 414 REMARK 610 LFA A 415 REMARK 610 LFA A 416 REMARK 610 LFA A 417 REMARK 610 LFA A 418 REMARK 610 LFA A 419 REMARK 610 LFA A 420 REMARK 610 LFA A 421 REMARK 610 LFA A 422 REMARK 610 LFA A 423 REMARK 610 LFA A 424 REMARK 610 LFA A 425 REMARK 610 OLA B 401 REMARK 610 LFA B 402 REMARK 610 LFA B 403 REMARK 610 LFA B 404 REMARK 610 LFA B 405 REMARK 610 LFA B 406 REMARK 610 LFA B 407 REMARK 610 LFA B 408 REMARK 610 LFA B 409 REMARK 610 LFA B 410 REMARK 610 LFA B 411 REMARK 610 LFA B 412 REMARK 610 OLA B 413 REMARK 610 OLA B 414 REMARK 610 LFA B 415 REMARK 610 LFA B 416 REMARK 610 LFA B 417 REMARK 610 LFA B 418 REMARK 610 LFA B 419 REMARK 610 LFA B 420 REMARK 610 LFA B 421 REMARK 610 LFA B 422 REMARK 610 LFA B 423 REMARK 610 LFA B 424 DBREF 7BMH A 1 313 UNP Q9HGT7 Q9HGT7_LEPMC 1 313 DBREF 7BMH B 1 313 UNP Q9HGT7 Q9HGT7_LEPMC 1 313 SEQADV 7BMH GLY A 314 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH THR A 315 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS A 316 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS A 317 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS A 318 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS A 319 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS A 320 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS A 321 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS A 322 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS A 323 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS A 324 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH GLY B 314 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH THR B 315 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS B 316 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS B 317 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS B 318 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS B 319 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS B 320 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS B 321 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS B 322 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS B 323 UNP Q9HGT7 EXPRESSION TAG SEQADV 7BMH HIS B 324 UNP Q9HGT7 EXPRESSION TAG SEQRES 1 A 324 MET ILE VAL ASP GLN PHE GLU GLU VAL LEU MET LYS THR SEQRES 2 A 324 SER GLN LEU PHE PRO LEU PRO THR ALA THR GLN SER ALA SEQRES 3 A 324 GLN PRO THR HIS VAL ALA PRO VAL PRO THR VAL LEU PRO SEQRES 4 A 324 ASP THR PRO ILE TYR GLU THR VAL GLY ASP SER GLY SER SEQRES 5 A 324 LYS THR LEU TRP VAL VAL PHE VAL LEU MET LEU ILE ALA SEQRES 6 A 324 SER ALA ALA PHE THR ALA LEU SER TRP LYS ILE PRO VAL SEQRES 7 A 324 ASN ARG ARG LEU TYR HIS VAL ILE THR THR ILE ILE THR SEQRES 8 A 324 LEU THR ALA ALA LEU SER TYR PHE ALA MET ALA THR GLY SEQRES 9 A 324 HIS GLY VAL ALA LEU ASN LYS ILE VAL ILE ARG THR GLN SEQRES 10 A 324 HIS ASP HIS VAL PRO ASP THR TYR GLU THR VAL TYR ARG SEQRES 11 A 324 GLN VAL TYR TYR ALA ARG TYR ILE ASP TRP ALA ILE THR SEQRES 12 A 324 THR PRO LEU LEU LEU LEU ASP LEU GLY LEU LEU ALA GLY SEQRES 13 A 324 MET SER GLY ALA HIS ILE PHE MET ALA ILE VAL ALA ASP SEQRES 14 A 324 LEU ILE MET VAL LEU THR GLY LEU PHE ALA ALA PHE GLY SEQRES 15 A 324 SER GLU GLY THR PRO GLN LYS TRP GLY TRP TYR THR ILE SEQRES 16 A 324 ALA CYS ILE ALA TYR ILE PHE VAL VAL TRP HIS LEU VAL SEQRES 17 A 324 LEU ASN GLY GLY ALA ASN ALA ARG VAL LYS GLY GLU LYS SEQRES 18 A 324 LEU ARG SER PHE PHE VAL ALA ILE GLY ALA TYR THR LEU SEQRES 19 A 324 ILE LEU TRP THR ALA TYR PRO ILE VAL TRP GLY LEU ALA SEQRES 20 A 324 ASP GLY ALA ARG LYS ILE GLY VAL ASP GLY GLU ILE ILE SEQRES 21 A 324 ALA TYR ALA VAL LEU ASP VAL LEU ALA LYR GLY VAL PHE SEQRES 22 A 324 GLY ALA TRP LEU LEU VAL THR HIS ALA ASN LEU ARG GLU SEQRES 23 A 324 SER ASP VAL GLU LEU ASN GLY PHE TRP ALA ASN GLY LEU SEQRES 24 A 324 ASN ARG GLU GLY ALA ILE ARG ILE GLY GLU ASP ASP GLY SEQRES 25 A 324 ALA GLY THR HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 324 MET ILE VAL ASP GLN PHE GLU GLU VAL LEU MET LYS THR SEQRES 2 B 324 SER GLN LEU PHE PRO LEU PRO THR ALA THR GLN SER ALA SEQRES 3 B 324 GLN PRO THR HIS VAL ALA PRO VAL PRO THR VAL LEU PRO SEQRES 4 B 324 ASP THR PRO ILE TYR GLU THR VAL GLY ASP SER GLY SER SEQRES 5 B 324 LYS THR LEU TRP VAL VAL PHE VAL LEU MET LEU ILE ALA SEQRES 6 B 324 SER ALA ALA PHE THR ALA LEU SER TRP LYS ILE PRO VAL SEQRES 7 B 324 ASN ARG ARG LEU TYR HIS VAL ILE THR THR ILE ILE THR SEQRES 8 B 324 LEU THR ALA ALA LEU SER TYR PHE ALA MET ALA THR GLY SEQRES 9 B 324 HIS GLY VAL ALA LEU ASN LYS ILE VAL ILE ARG THR GLN SEQRES 10 B 324 HIS ASP HIS VAL PRO ASP THR TYR GLU THR VAL TYR ARG SEQRES 11 B 324 GLN VAL TYR TYR ALA ARG TYR ILE ASP TRP ALA ILE THR SEQRES 12 B 324 THR PRO LEU LEU LEU LEU ASP LEU GLY LEU LEU ALA GLY SEQRES 13 B 324 MET SER GLY ALA HIS ILE PHE MET ALA ILE VAL ALA ASP SEQRES 14 B 324 LEU ILE MET VAL LEU THR GLY LEU PHE ALA ALA PHE GLY SEQRES 15 B 324 SER GLU GLY THR PRO GLN LYS TRP GLY TRP TYR THR ILE SEQRES 16 B 324 ALA CYS ILE ALA TYR ILE PHE VAL VAL TRP HIS LEU VAL SEQRES 17 B 324 LEU ASN GLY GLY ALA ASN ALA ARG VAL LYS GLY GLU LYS SEQRES 18 B 324 LEU ARG SER PHE PHE VAL ALA ILE GLY ALA TYR THR LEU SEQRES 19 B 324 ILE LEU TRP THR ALA TYR PRO ILE VAL TRP GLY LEU ALA SEQRES 20 B 324 ASP GLY ALA ARG LYS ILE GLY VAL ASP GLY GLU ILE ILE SEQRES 21 B 324 ALA TYR ALA VAL LEU ASP VAL LEU ALA LYR GLY VAL PHE SEQRES 22 B 324 GLY ALA TRP LEU LEU VAL THR HIS ALA ASN LEU ARG GLU SEQRES 23 B 324 SER ASP VAL GLU LEU ASN GLY PHE TRP ALA ASN GLY LEU SEQRES 24 B 324 ASN ARG GLU GLY ALA ILE ARG ILE GLY GLU ASP ASP GLY SEQRES 25 B 324 ALA GLY THR HIS HIS HIS HIS HIS HIS HIS HIS HIS MODRES 7BMH LYR A 270 LYS MODIFIED RESIDUE MODRES 7BMH LYR B 270 LYS MODIFIED RESIDUE HET LYR A 270 29 HET LYR B 270 29 HET LFA A 401 16 HET OLA A 402 16 HET LFA A 403 8 HET LFA A 404 14 HET LFA A 405 10 HET LFA A 406 14 HET LFA A 407 7 HET LFA A 408 12 HET LFA A 409 10 HET LFA A 410 12 HET LFA A 411 3 HET OLA A 412 14 HET OLA A 413 10 HET LFA A 414 3 HET LFA A 415 6 HET LFA A 416 4 HET LFA A 417 5 HET LFA A 418 3 HET LFA A 419 3 HET LFA A 420 4 HET LFA A 421 4 HET LFA A 422 6 HET LFA A 423 7 HET LFA A 424 5 HET LFA A 425 12 HET OLA B 401 16 HET LFA B 402 15 HET LFA B 403 16 HET LFA B 404 10 HET LFA B 405 8 HET LFA B 406 8 HET LFA B 407 10 HET LFA B 408 7 HET LFA B 409 11 HET LFA B 410 8 HET LFA B 411 10 HET LFA B 412 6 HET OLA B 413 11 HET OLA B 414 16 HET LFA B 415 3 HET LFA B 416 9 HET LFA B 417 7 HET LFA B 418 3 HET LFA B 419 4 HET LFA B 420 3 HET LFA B 421 7 HET LFA B 422 7 HET LFA B 423 9 HET LFA B 424 7 HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6- HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8- HETNAM 3 LYR TETRAENYL]LYSINE HETNAM LFA EICOSANE HETNAM OLA OLEIC ACID HETSYN LFA LIPID FRAGMENT FORMUL 1 LYR 2(C26 H42 N2 O2) FORMUL 3 LFA 43(C20 H42) FORMUL 4 OLA 6(C18 H34 O2) FORMUL 52 HOH *102(H2 O) HELIX 1 AA1 GLY A 48 TRP A 74 1 27 HELIX 2 AA2 LYS A 75 ILE A 76 5 2 HELIX 3 AA3 PRO A 77 ARG A 80 5 4 HELIX 4 AA4 ARG A 81 THR A 103 1 23 HELIX 5 AA5 TYR A 134 GLY A 156 1 23 HELIX 6 AA6 SER A 158 GLY A 182 1 25 HELIX 7 AA7 PRO A 187 VAL A 217 1 31 HELIX 8 AA8 GLY A 219 ALA A 247 1 29 HELIX 9 AA9 GLY A 254 ASN A 283 1 30 HELIX 10 AB1 GLY B 48 LYS B 75 1 28 HELIX 11 AB2 ILE B 76 ARG B 80 5 5 HELIX 12 AB3 ARG B 81 THR B 103 1 23 HELIX 13 AB4 TYR B 134 GLY B 156 1 23 HELIX 14 AB5 SER B 158 PHE B 181 1 24 HELIX 15 AB6 PRO B 187 LYS B 218 1 32 HELIX 16 AB7 GLY B 219 ALA B 247 1 29 HELIX 17 AB8 GLY B 254 LEU B 284 1 31 SHEET 1 AA1 3 ILE A 43 GLU A 45 0 SHEET 2 AA1 3 THR A 124 VAL A 132 1 O TYR A 129 N GLU A 45 SHEET 3 AA1 3 ALA A 108 THR A 116 -1 N ILE A 112 O VAL A 128 SHEET 1 AA2 3 ILE B 43 GLU B 45 0 SHEET 2 AA2 3 THR B 124 VAL B 132 1 O TYR B 129 N GLU B 45 SHEET 3 AA2 3 ALA B 108 THR B 116 -1 N THR B 116 O THR B 124 LINK C ALA A 269 N LYR A 270 1555 1555 1.33 LINK C LYR A 270 N GLY A 271 1555 1555 1.33 LINK C ALA B 269 N LYR B 270 1555 1555 1.34 LINK C LYR B 270 N GLY B 271 1555 1555 1.36 CRYST1 63.540 70.780 148.020 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006756 0.00000