HEADER OXIDOREDUCTASE 20-JAN-21 7BMI TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) OXYGENASE AND TPR DOMAINS TITLE 2 IN COMPLEX WITH MANGANESE, 3-FLUOROPYRIDINE-2,4-DICARBOXYLIC ACID, TITLE 3 AND FACTOR X SUBSTRATE PEPTIDE FRAGMENT (39MER-4SER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- COMPND 5 ASPARTATE BETA-DIOXYGENASE; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COAGULATION FACTOR X; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: STUART FACTOR,STUART-PROWER FACTOR; COMPND 12 EC: 3.4.21.6; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASPH, BAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE, DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD REVDAT 3 20-NOV-24 7BMI 1 REMARK REVDAT 2 31-JAN-24 7BMI 1 JRNL REVDAT 1 02-JUN-21 7BMI 0 JRNL AUTH L.BREWITZ,Y.NAKASHIMA,A.TUMBER,E.SALAH,C.J.SCHOFIELD JRNL TITL FLUORINATED DERIVATIVES OF PYRIDINE-2,4-DICARBOXYLATE ARE JRNL TITL 2 POTENT INHIBITORS OF HUMAN 2-OXOGLUTARATE DEPENDENT JRNL TITL 3 OXYGENASES JRNL REF J FLUOR CHEM V. 247 09804 2021 JRNL REFN ISSN 0022-1139 JRNL DOI 10.1016/J.JFLUCHEM.2021.109804 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 116324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0600 - 4.8500 1.00 4923 154 0.1672 0.2030 REMARK 3 2 4.8500 - 3.8500 1.00 4920 153 0.1333 0.1699 REMARK 3 3 3.8500 - 3.3700 1.00 4958 154 0.1537 0.1851 REMARK 3 4 3.3600 - 3.0600 1.00 4935 150 0.1730 0.1909 REMARK 3 5 3.0600 - 2.8400 1.00 4968 151 0.1810 0.2178 REMARK 3 6 2.8400 - 2.6700 1.00 4938 150 0.1817 0.2375 REMARK 3 7 2.6700 - 2.5400 1.00 4921 151 0.1904 0.1870 REMARK 3 8 2.5400 - 2.4300 1.00 4957 153 0.1872 0.2328 REMARK 3 9 2.4300 - 2.3300 1.00 4938 153 0.1895 0.2608 REMARK 3 10 2.3300 - 2.2500 1.00 4916 141 0.1974 0.2304 REMARK 3 11 2.2500 - 2.1800 1.00 4964 156 0.1999 0.2258 REMARK 3 12 2.1800 - 2.1200 1.00 4938 150 0.2037 0.2849 REMARK 3 13 2.1200 - 2.0600 1.00 4926 154 0.2209 0.2189 REMARK 3 14 2.0600 - 2.0100 1.00 4954 153 0.2274 0.2358 REMARK 3 15 2.0100 - 1.9700 1.00 4960 156 0.2521 0.2994 REMARK 3 16 1.9700 - 1.9300 1.00 4894 151 0.2783 0.3127 REMARK 3 17 1.9300 - 1.8900 1.00 4972 151 0.3179 0.3781 REMARK 3 18 1.8900 - 1.8500 1.00 4951 153 0.3353 0.2838 REMARK 3 19 1.8500 - 1.8200 1.00 4903 152 0.3693 0.3310 REMARK 3 20 1.8200 - 1.7900 1.00 4916 153 0.3813 0.4037 REMARK 3 21 1.7900 - 1.7600 0.98 4866 152 0.4084 0.4299 REMARK 3 22 1.7600 - 1.7300 0.85 4186 127 0.4376 0.4573 REMARK 3 23 1.7300 - 1.7100 0.58 2876 91 0.4415 0.4297 REMARK 3 24 1.7100 - 1.6800 0.29 1469 44 0.4490 0.5002 REMARK 3 25 1.6800 - 1.6600 0.14 699 23 0.4672 0.5945 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.256 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.932 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3723 REMARK 3 ANGLE : 1.097 5040 REMARK 3 CHIRALITY : 0.069 527 REMARK 3 PLANARITY : 0.009 662 REMARK 3 DIHEDRAL : 21.546 1400 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7655 41.8794 68.0981 REMARK 3 T TENSOR REMARK 3 T11: 0.5271 T22: 0.5029 REMARK 3 T33: 0.5747 T12: -0.0852 REMARK 3 T13: 0.0610 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.8844 L22: 2.4373 REMARK 3 L33: 4.1830 L12: 1.2994 REMARK 3 L13: 0.6365 L23: 1.1542 REMARK 3 S TENSOR REMARK 3 S11: 0.3504 S12: -0.7409 S13: 0.0453 REMARK 3 S21: 0.3290 S22: -0.4140 S23: 0.7027 REMARK 3 S31: 0.0489 S32: -0.6216 S33: 0.0611 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 467 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.7163 37.6914 51.3264 REMARK 3 T TENSOR REMARK 3 T11: 0.5607 T22: 0.3733 REMARK 3 T33: 0.4816 T12: 0.1246 REMARK 3 T13: -0.0459 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.6939 L22: 1.3121 REMARK 3 L33: 3.7779 L12: 0.1110 REMARK 3 L13: -0.7057 L23: 1.7831 REMARK 3 S TENSOR REMARK 3 S11: 0.4909 S12: 0.4048 S13: -0.1032 REMARK 3 S21: -0.2245 S22: -0.3382 S23: 0.2363 REMARK 3 S31: -0.4020 S32: -0.2668 S33: -0.0771 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 468 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.8868 19.0806 21.1979 REMARK 3 T TENSOR REMARK 3 T11: 0.2687 T22: 0.3124 REMARK 3 T33: 0.2810 T12: -0.0312 REMARK 3 T13: -0.0098 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 2.1355 L22: 0.9956 REMARK 3 L33: 3.8626 L12: -0.3894 REMARK 3 L13: 2.2344 L23: 0.2575 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: -0.4218 S13: -0.1458 REMARK 3 S21: 0.1819 S22: 0.1946 S23: -0.0984 REMARK 3 S31: 0.3836 S32: -0.5505 S33: -0.1312 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.4106 24.5049 26.4856 REMARK 3 T TENSOR REMARK 3 T11: 0.3794 T22: 0.4955 REMARK 3 T33: 0.3918 T12: 0.0605 REMARK 3 T13: -0.0717 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 1.4628 L22: 0.9066 REMARK 3 L33: 6.6782 L12: 1.1400 REMARK 3 L13: 2.7240 L23: 1.9458 REMARK 3 S TENSOR REMARK 3 S11: -0.0916 S12: -0.1124 S13: 0.0500 REMARK 3 S21: 0.3593 S22: -0.0394 S23: -0.2493 REMARK 3 S31: -0.1835 S32: -0.1158 S33: -0.1507 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2463 29.9166 33.5064 REMARK 3 T TENSOR REMARK 3 T11: 0.6209 T22: 0.7914 REMARK 3 T33: 0.4267 T12: 0.1531 REMARK 3 T13: -0.0518 T23: -0.1525 REMARK 3 L TENSOR REMARK 3 L11: 0.1342 L22: 0.1440 REMARK 3 L33: 2.4652 L12: 0.1054 REMARK 3 L13: 0.5289 L23: 0.5668 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.3361 S13: 0.5613 REMARK 3 S21: 0.1534 S22: -0.1037 S23: 0.0145 REMARK 3 S31: -0.3994 S32: -0.8468 S33: -0.1116 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6742 34.7650 42.5194 REMARK 3 T TENSOR REMARK 3 T11: 0.7836 T22: 0.8034 REMARK 3 T33: 0.9879 T12: 0.1360 REMARK 3 T13: 0.1222 T23: -0.2409 REMARK 3 L TENSOR REMARK 3 L11: 0.8165 L22: 0.9009 REMARK 3 L33: 2.9418 L12: 0.6440 REMARK 3 L13: 0.3430 L23: 0.9354 REMARK 3 S TENSOR REMARK 3 S11: 0.2928 S12: -0.2389 S13: 0.1745 REMARK 3 S21: 0.1718 S22: -0.2041 S23: 0.0599 REMARK 3 S31: -0.2860 S32: -0.6406 S33: -0.0084 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97627 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116324 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 46.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.20900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JTC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES SODIUM, 200 MM AMMONIUM REMARK 280 CHLORIDE, 20% W/V PEG 4000, 1 MM MANGANESE CHLORIDE, 2 MM 2- REMARK 280 OXOGLUTARATE, 18 MG/ML PROTEIN, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.85100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.31450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.63700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.31450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.85100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.63700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 THR B 92 REMARK 465 SER B 93 REMARK 465 PRO B 94 REMARK 465 SER B 95 REMARK 465 GLN B 96 REMARK 465 ASN B 97 REMARK 465 GLN B 98 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 LYS B 119 REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 PHE B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 336 CE NZ REMARK 470 LYS A 356 CE NZ REMARK 470 GLN A 448 OE1 NE2 REMARK 470 LYS A 541 CE NZ REMARK 470 LYS A 545 CG CD CE NZ REMARK 470 LYS A 552 CE NZ REMARK 470 LYS A 579 CD CE NZ REMARK 470 LYS A 609 CE NZ REMARK 470 ARG A 635 CZ NH1 NH2 REMARK 470 LYS A 653 CD CE NZ REMARK 470 LYS A 697 CD CE NZ REMARK 470 LYS A 715 NZ REMARK 470 GLN A 750 OE1 NE2 REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1017 O HOH A 1118 1.73 REMARK 500 O HOH A 1091 O HOH A 1132 1.82 REMARK 500 O HOH A 1046 O HOH A 1203 1.86 REMARK 500 O HOH A 913 O HOH B 201 1.92 REMARK 500 O HOH A 994 O HOH A 1126 1.93 REMARK 500 O HOH A 1162 O HOH A 1175 2.00 REMARK 500 O HOH A 1109 O HOH A 1180 2.00 REMARK 500 O HOH A 912 O HOH A 1189 2.06 REMARK 500 O HOH A 1046 O HOH A 1174 2.09 REMARK 500 O HOH A 1150 O HOH A 1244 2.09 REMARK 500 O HOH A 1133 O HOH A 1207 2.11 REMARK 500 OD2 ASP B 103 O HOH B 201 2.11 REMARK 500 O HOH B 216 O HOH B 218 2.13 REMARK 500 O HOH A 1035 O HOH A 1180 2.14 REMARK 500 O HOH A 1111 O HOH A 1191 2.15 REMARK 500 O HOH A 1151 O HOH A 1233 2.16 REMARK 500 O HOH A 913 O HOH A 1037 2.17 REMARK 500 O HOH A 1124 O HOH A 1177 2.17 REMARK 500 O HOH B 213 O HOH B 214 2.18 REMARK 500 O HOH A 1205 O HOH B 214 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 469 75.53 -101.98 REMARK 500 TYR A 583 52.69 -90.26 REMARK 500 ALA A 608 54.10 -149.25 REMARK 500 ALA A 705 -116.94 51.17 REMARK 500 ALA A 731 -166.46 -79.79 REMARK 500 LYS B 102 -65.25 -93.16 REMARK 500 LYS B 102 -66.81 -93.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1256 DISTANCE = 7.03 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 801 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 679 NE2 REMARK 620 2 HIS A 725 NE2 84.5 REMARK 620 3 U4B A 802 N07 97.3 102.8 REMARK 620 4 U4B A 802 O11 176.1 97.1 78.8 REMARK 620 5 HOH A 965 O 96.7 94.3 158.8 86.7 REMARK 620 6 ASP B 103 OD1 96.3 176.6 80.5 82.3 82.3 REMARK 620 N 1 2 3 4 5 DBREF 7BMI A 330 758 UNP Q12797 ASPH_HUMAN 330 758 DBREF 7BMI B 86 124 UNP P00742 FA10_HUMAN 86 124 SEQADV 7BMI SER B 90 UNP P00742 CYS 90 CONFLICT SEQADV 7BMI SER B 95 UNP P00742 CYS 95 CONFLICT SEQADV 7BMI SER B 112 UNP P00742 CYS 112 CONFLICT SEQADV 7BMI SER B 121 UNP P00742 CYS 121 CONFLICT SEQRES 1 A 429 LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR ILE LYS SEQRES 2 A 429 ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS ARG GLY SEQRES 3 A 429 LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU LEU VAL SEQRES 4 A 429 ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR GLY LYS SEQRES 5 A 429 ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG ARG SER SEQRES 6 A 429 ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR GLN GLU SEQRES 7 A 429 VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU LEU LYS SEQRES 8 A 429 LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN PHE LEU SEQRES 9 A 429 GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN ARG LEU SEQRES 10 A 429 VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS ASN ASP SEQRES 11 A 429 LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN ASP ASN SEQRES 12 A 429 ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL THR PRO SEQRES 13 A 429 ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE ILE LEU SEQRES 14 A 429 LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO TYR LEU SEQRES 15 A 429 LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR ASP ASP SEQRES 16 A 429 GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET GLN ARG SEQRES 17 A 429 VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU LEU GLY SEQRES 18 A 429 HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN ARG SER SEQRES 19 A 429 LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO TRP TRP SEQRES 20 A 429 THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL LYS SER SEQRES 21 A 429 LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU GLY LEU SEQRES 22 A 429 ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU PRO GLU SEQRES 23 A 429 ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER GLN PHE SEQRES 24 A 429 THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN ALA CYS SEQRES 25 A 429 LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU LYS PHE SEQRES 26 A 429 PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE LYS TYR SEQRES 27 A 429 SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO HIS THR SEQRES 28 A 429 GLY PRO THR ASN CYS ARG LEU ARG MET HIS LEU GLY LEU SEQRES 29 A 429 VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS ALA ASN SEQRES 30 A 429 GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU ILE PHE SEQRES 31 A 429 ASP ASP SER PHE GLU HIS GLU VAL TRP GLN ASP ALA SER SEQRES 32 A 429 SER PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP HIS PRO SEQRES 33 A 429 GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO ALA ILE SEQRES 1 B 39 ASP GLY ASP GLN SER GLU THR SER PRO SER GLN ASN GLN SEQRES 2 B 39 GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS THR SEQRES 3 B 39 SER LEU GLU GLY PHE GLU GLY LYS ASN SER GLU LEU PHE HET MN A 801 1 HET U4B A 802 15 HETNAM MN MANGANESE (II) ION HETNAM U4B 3-FLUORANYLPYRIDINE-2,4-DICARBOXYLIC ACID FORMUL 3 MN MN 2+ FORMUL 4 U4B C7 H4 F N O4 FORMUL 5 HOH *375(H2 O) HELIX 1 AA1 ASN A 335 ILE A 341 1 7 HELIX 2 AA2 ILE A 341 ARG A 354 1 14 HELIX 3 AA3 LYS A 356 TYR A 371 1 16 HELIX 4 AA4 SER A 374 ARG A 393 1 20 HELIX 5 AA5 SER A 394 LEU A 411 1 18 HELIX 6 AA6 PRO A 415 GLY A 434 1 20 HELIX 7 AA7 HIS A 435 PHE A 450 1 16 HELIX 8 AA8 ASP A 453 ILE A 467 1 15 HELIX 9 AA9 ASP A 469 THR A 484 1 16 HELIX 10 AB1 ASP A 487 GLN A 501 1 15 HELIX 11 AB2 LYS A 503 GLY A 518 1 16 HELIX 12 AB3 ASP A 524 GLY A 539 1 16 HELIX 13 AB4 GLU A 542 ARG A 553 1 12 HELIX 14 AB5 THR A 577 GLY A 582 1 6 HELIX 15 AB6 TYR A 583 ASN A 593 1 11 HELIX 16 AB7 ASN A 593 ALA A 608 1 16 HELIX 17 AB8 LYS A 609 PHE A 612 5 4 HELIX 18 AB9 ASN A 637 ALA A 644 1 8 HELIX 19 AC1 ALA A 644 GLU A 652 1 9 HELIX 20 AC2 PHE A 654 GLY A 659 1 6 HELIX 21 AC3 THR A 748 LEU A 755 1 8 SHEET 1 AA1 3 LEU A 613 PRO A 614 0 SHEET 2 AA1 3 TRP A 625 GLN A 632 -1 O GLN A 627 N LEU A 613 SHEET 3 AA1 3 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632 SHEET 1 AA2 6 LEU A 613 PRO A 614 0 SHEET 2 AA2 6 TRP A 625 GLN A 632 -1 O GLN A 627 N LEU A 613 SHEET 3 AA2 6 GLN A 664 MET A 670 -1 O TYR A 667 N PHE A 628 SHEET 4 AA2 6 ARG A 735 TRP A 743 -1 O ILE A 739 N LYS A 666 SHEET 5 AA2 6 ARG A 686 VAL A 694 -1 N LEU A 691 O PHE A 738 SHEET 6 AA2 6 VAL A 716 PHE A 719 -1 O LEU A 717 N HIS A 690 SHEET 1 AA3 5 ARG A 620 LYS A 622 0 SHEET 2 AA3 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AA3 5 HIS A 725 GLN A 729 -1 O VAL A 727 N VAL A 676 SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N ARG A 703 O GLU A 726 SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O LYS A 709 N ILE A 702 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.05 SSBOND 2 CYS B 101 CYS B 110 1555 1555 2.02 LINK NE2 HIS A 679 MN MN A 801 1555 1555 2.33 LINK NE2 HIS A 725 MN MN A 801 1555 1555 2.17 LINK MN MN A 801 N07 U4B A 802 1555 1555 2.29 LINK MN MN A 801 O11 U4B A 802 1555 1555 2.16 LINK MN MN A 801 O HOH A 965 1555 1555 2.04 LINK MN MN A 801 OD1BASP B 103 1555 1555 2.59 CRYST1 49.702 91.274 122.629 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010956 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008155 0.00000