HEADER TRANSCRIPTION 20-JAN-21 7BMY TITLE P62PH IN CESIUM CHLORIDE (0.7 M CSCL IN CRYSTALLIZATION CONDITION AND TITLE 2 CRYO PROTECTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B 73 KDA SUBUNIT- COMPND 3 LIKE PROTEIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: P62 PLECKSTRIN HOMOLOGY DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS SOURCE 3 144.50 / IMI 039719); SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 6 GENE: CTHT_0001260; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CESIUM, PHASING, PLECKSTRIN HOMOLOGY DOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.KOELMEL,J.KUPER,C.KISKER REVDAT 1 06-OCT-21 7BMY 0 JRNL AUTH W.KOELMEL,J.KUPER,C.KISKER JRNL TITL CESIUM BASED PHASING OF MACROMOLECULES: A GENERAL EASY TO JRNL TITL 2 USE APPROACH FOR SOLVING THE PHASE PROBLEM. JRNL REF SCI REP V. 11 17038 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 34426585 JRNL DOI 10.1038/S41598-021-95186-1 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 12052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 592 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : -1.57000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 948 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 892 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1303 ; 2.108 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2093 ; 1.136 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 123 ; 5.590 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;27.641 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 156 ;14.102 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;16.974 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 149 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1044 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 174 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7BMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292112156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.77114 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12670 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 33.00 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.1 REMARK 200 DATA REDUNDANCY IN SHELL : 21.70 REMARK 200 R MERGE FOR SHELL (I) : 1.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7 M CESIUM CHLORIDE, 18 % (W/V) PEG REMARK 280 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.21300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.39550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.21300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.39550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.93500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.21300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.39550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.93500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.21300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.39550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CS CS A 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 LYS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 MET A -16 REMARK 465 SER A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ARG A 109 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 365 O HOH A 385 8556 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 32 CA PRO A 32 C 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 99 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 18.07 59.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 468 DISTANCE = 6.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 204 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 5 O REMARK 620 2 GLU A 93 OE2 111.8 REMARK 620 3 HOH A 303 O 67.8 72.3 REMARK 620 4 HOH A 413 O 69.6 154.6 85.8 REMARK 620 5 HOH A 467 O 114.2 94.3 64.8 64.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 208 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 7 OE1 REMARK 620 2 THR A 85 O 86.2 REMARK 620 3 THR A 85 OG1 94.2 64.1 REMARK 620 4 HOH A 308 O 157.0 101.6 70.6 REMARK 620 5 HOH A 441 O 74.6 150.6 94.9 89.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 206 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 10 OH REMARK 620 2 GLN A 79 O 116.5 REMARK 620 3 HOH A 428 O 147.6 69.3 REMARK 620 4 HOH A 429 O 130.0 77.3 82.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 207 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 43 O REMARK 620 2 ILE A 46 O 80.8 REMARK 620 3 HOH A 430 O 134.0 95.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 205 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 47 O REMARK 620 2 ASP A 99 OD2 75.6 REMARK 620 3 HOH A 309 O 64.6 65.7 REMARK 620 4 HOH A 457 O 123.8 48.3 86.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 201 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 56 O REMARK 620 2 SER A 56 O 0.0 REMARK 620 3 HOH A 370 O 59.9 59.9 REMARK 620 4 HOH A 370 O 122.9 122.9 122.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 203 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 68 O REMARK 620 2 ALA A 71 O 91.8 REMARK 620 3 HOH A 334 O 143.7 52.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 202 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD2 REMARK 620 2 ALA A 106 O 95.5 REMARK 620 3 ALA A 107 O 97.1 7.3 REMARK 620 4 HOH A 347 O 93.5 2.5 6.8 REMARK 620 N 1 2 3 DBREF 7BMY A 1 109 UNP G0RZ08 G0RZ08_CHATD 1 109 SEQADV 7BMY MET A -25 UNP G0RZ08 INITIATING METHIONINE SEQADV 7BMY LYS A -24 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY HIS A -23 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY HIS A -22 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY HIS A -21 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY HIS A -20 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY HIS A -19 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY HIS A -18 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY PRO A -17 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY MET A -16 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY SER A -15 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY ASP A -14 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY TYR A -13 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY ASP A -12 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY ILE A -11 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY PRO A -10 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY THR A -9 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY THR A -8 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY GLU A -7 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY ASN A -6 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY LEU A -5 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY TYR A -4 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY PHE A -3 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY GLN A -2 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY GLY A -1 UNP G0RZ08 EXPRESSION TAG SEQADV 7BMY ALA A 0 UNP G0RZ08 EXPRESSION TAG SEQRES 1 A 135 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 135 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 A 135 MET SER ILE PRO ARG SER GLN THR THR TYR LYS LYS LYS SEQRES 4 A 135 GLU GLY ILE LEU THR LEU THR GLU ASP ARG LYS PHE LEU SEQRES 5 A 135 ILE TRP THR PRO LEU PRO ALA THR GLY PRO PRO THR VAL SEQRES 6 A 135 SER LEU ALA LEU ASP ASN ILE THR ASN LEU GLN GLN THR SEQRES 7 A 135 PRO PRO GLY SER ALA LYS VAL ILE LEU LYS PHE THR GLU SEQRES 8 A 135 ARG PRO ARG PRO ASN ALA GLU PRO GLY ALA PRO PRO PRO SEQRES 9 A 135 GLN TYR MET PHE GLN PHE THR HIS PRO THR ASP ALA ARG SEQRES 10 A 135 ALA GLU ALA ASN ALA ILE ARG ASP LEU LEU SER GLN LEU SEQRES 11 A 135 LEU ALA ALA ALA ARG HET CS A 201 1 HET CS A 202 1 HET CS A 203 1 HET CS A 204 1 HET CS A 205 1 HET CS A 206 1 HET CS A 207 1 HET CS A 208 1 HET CL A 209 1 HET CL A 210 1 HET CL A 211 1 HET CL A 212 1 HET CL A 213 1 HET CL A 214 1 HETNAM CS CESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CS 8(CS 1+) FORMUL 10 CL 6(CL 1-) FORMUL 16 HOH *168(H2 O) HELIX 1 AA1 ASP A 89 ALA A 108 1 20 SHEET 1 AA1 7 VAL A 39 ALA A 42 0 SHEET 2 AA1 7 PHE A 25 PRO A 30 -1 N LEU A 26 O LEU A 41 SHEET 3 AA1 7 LYS A 13 LEU A 19 -1 N THR A 18 O ILE A 27 SHEET 4 AA1 7 SER A 6 TYR A 10 -1 N SER A 6 O LEU A 17 SHEET 5 AA1 7 GLN A 79 PHE A 84 -1 O GLN A 83 N THR A 9 SHEET 6 AA1 7 ILE A 60 GLU A 65 -1 N PHE A 63 O TYR A 80 SHEET 7 AA1 7 ILE A 46 GLN A 51 -1 N THR A 47 O THR A 64 LINK O ARG A 5 CS CS A 204 1555 1555 3.20 LINK OE1 GLN A 7 CS CS A 208 1555 1555 3.30 LINK OH TYR A 10 CS CS A 206 1555 1555 3.17 LINK O LEU A 43 CS CS A 207 1555 1555 3.21 LINK O ILE A 46 CS CS A 207 1555 1555 2.95 LINK O THR A 47 CS CS A 205 1555 1555 2.79 LINK O SER A 56 CS CS A 201 1555 1555 2.99 LINK O SER A 56 CS CS A 201 1555 3656 2.97 LINK O ARG A 68 CS CS A 203 1555 1555 3.45 LINK O ALA A 71 CS CS A 203 1555 1555 3.28 LINK O GLN A 79 CS CS A 206 1555 1555 2.83 LINK O THR A 85 CS CS A 208 1555 1555 3.45 LINK OG1 THR A 85 CS CS A 208 1555 1555 3.15 LINK OD2 ASP A 89 CS CS A 202 1555 8456 3.14 LINK OE2 GLU A 93 CS CS A 204 1555 1555 3.38 LINK OD2 ASP A 99 CS CS A 205 1555 8456 3.32 LINK O ALA A 106 CS CS A 202 1555 1555 3.38 LINK O ALA A 107 CS CS A 202 1555 1555 3.02 LINK CS CS A 201 O HOH A 370 1555 1555 2.71 LINK CS CS A 201 O HOH A 370 1555 3656 2.67 LINK CS CS A 202 O HOH A 347 1555 1555 3.45 LINK CS CS A 203 O HOH A 334 1555 1555 2.78 LINK CS CS A 204 O HOH A 303 1555 1555 2.89 LINK CS CS A 204 O HOH A 413 1555 1555 3.23 LINK CS CS A 204 O HOH A 467 1555 1555 3.20 LINK CS CS A 205 O HOH A 309 1555 8556 3.30 LINK CS CS A 205 O HOH A 457 1555 8556 3.39 LINK CS CS A 206 O HOH A 428 1555 1555 3.47 LINK CS CS A 206 O HOH A 429 1555 1555 2.98 LINK CS CS A 207 O HOH A 430 1555 1555 3.06 LINK CS CS A 208 O HOH A 308 1555 1555 3.47 LINK CS CS A 208 O HOH A 441 1555 1555 3.09 CISPEP 1 LEU A 31 PRO A 32 0 8.67 CRYST1 34.426 106.791 75.870 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013180 0.00000