HEADER TRANSPORT PROTEIN 21-JAN-21 7BN1 TITLE CLATHRIN HEAVY CHAIN N-TERMINAL DOMAIN COMPLEXED WITH PEPTIDE FROM TITLE 2 PROTEIN MU-NS OF REOVIRUS TYPE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN HEAVY CHAIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CLATHRIN HEAVY CHAIN ON CHROMOSOME 17,CLH-17; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN MU-NS FROM REOVIRUS TYPE 1; COMPND 8 CHAIN: E, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLTC, CLH17, CLTCL2, KIAA0034; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MAMMALIAN ORTHOREOVIRUS 1 LANG; SOURCE 11 ORGANISM_TAXID: 10884 KEYWDS CLTC-NTD, CLATHRIN-BOX MOTIF, VIRAL REPLICATION PROTEIN E1, HPV, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.C.BADGUJAR,D.DOBRITZSCH REVDAT 3 07-FEB-24 7BN1 1 REMARK REVDAT 2 10-MAY-23 7BN1 1 JRNL REVDAT 1 02-MAR-22 7BN1 0 JRNL AUTH F.MIHALIC,L.SIMONETTI,G.GIUDICE,M.R.SANDER,R.LINDQVIST, JRNL AUTH 2 M.B.A.PETERS,C.BENZ,E.KASSA,D.BADGUJAR,R.INTURI,M.ALI, JRNL AUTH 3 I.KRYSTKOWIAK,A.SAYADI,E.ANDERSSON,H.ARONSSON,O.SODERBERG, JRNL AUTH 4 D.DOBRITZSCH,E.PETSALAKI,A.K.OVERBY,P.JEMTH,N.E.DAVEY, JRNL AUTH 5 Y.IVARSSON JRNL TITL LARGE-SCALE PHAGE-BASED SCREENING REVEALS EXTENSIVE JRNL TITL 2 PAN-VIRAL MIMICRY OF HOST SHORT LINEAR MOTIFS JRNL REF NAT COMMUN V. 14 2023 JRNL REFN ESSN 2041-1723 JRNL DOI 10.1038/S41467-023-38015-5 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.3 REMARK 3 NUMBER OF REFLECTIONS : 58624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 528 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 8.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 465 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5945 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5549 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8067 ; 1.540 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12924 ; 1.288 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 751 ; 7.961 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;36.487 ;23.831 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1036 ;15.354 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.747 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 809 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6619 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1159 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7BN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61571 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 89.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1C9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 550 MME; PEG 20K, 0.12M REMARK 280 MONOSACCHARIDES (D-GLUCOSE; D-MANNOSE; D-GALACTOSE; L-FUCOSE; D- REMARK 280 XYLOSE; N-ACETYL-D-GLUCOSAMINE) AND 0.1M SODIUM HEPES; MOPS REMARK 280 (ACID) PH-7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.76650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.46600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.76650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 64.46600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 698 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 712 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 485 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 364 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 PHE B 364 REMARK 465 VAL E 705 REMARK 465 ASP E 706 REMARK 465 GLY E 707 REMARK 465 VAL E 716 REMARK 465 PRO E 717 REMARK 465 THR E 718 REMARK 465 ASP E 719 REMARK 465 GLU E 720 REMARK 465 TYR E 721 REMARK 465 VAL F 705 REMARK 465 ASP F 706 REMARK 465 GLY F 707 REMARK 465 PRO F 717 REMARK 465 THR F 718 REMARK 465 ASP F 719 REMARK 465 GLU F 720 REMARK 465 TYR F 721 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 64 C PRO B 65 N 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 65 C - N - CA ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 59.62 -144.79 REMARK 500 ASN A 60 62.97 -114.53 REMARK 500 GLU B 46 -20.24 81.40 REMARK 500 ASN B 60 64.26 -113.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 401 DBREF 7BN1 A 1 364 UNP Q00610 CLH1_HUMAN 1 364 DBREF 7BN1 B 1 364 UNP Q00610 CLH1_HUMAN 1 364 DBREF 7BN1 E 705 721 PDB 7BN1 7BN1 705 721 DBREF 7BN1 F 705 721 PDB 7BN1 7BN1 705 721 SEQRES 1 A 364 MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU HIS LEU SEQRES 2 A 364 GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN ILE GLY SEQRES 3 A 364 PHE SER THR LEU THR MET GLU SER ASP LYS PHE ILE CYS SEQRES 4 A 364 ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL VAL ILE SEQRES 5 A 364 ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG ARG PRO SEQRES 6 A 364 ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SER LYS SEQRES 7 A 364 VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN ILE PHE SEQRES 8 A 364 ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS THR MET SEQRES 9 A 364 THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER LEU ASN SEQRES 10 A 364 THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR HIS TRP SEQRES 11 A 364 SER MET GLU GLY GLU SER GLN PRO VAL LYS MET PHE ASP SEQRES 12 A 364 ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE ASN TYR SEQRES 13 A 364 ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU THR GLY SEQRES 14 A 364 ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA MET GLN SEQRES 15 A 364 LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO ILE GLU SEQRES 16 A 364 GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET GLU GLY SEQRES 17 A 364 ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA VAL ARG SEQRES 18 A 364 GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU VAL GLY SEQRES 19 A 364 THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS LYS ALA SEQRES 20 A 364 VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN ASP PHE SEQRES 21 A 364 PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP VAL VAL SEQRES 22 A 364 PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU TYR ASP SEQRES 23 A 364 LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG ILE SER SEQRES 24 A 364 GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU ALA THR SEQRES 25 A 364 ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN VAL LEU SEQRES 26 A 364 SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO TYR ILE SEQRES 27 A 364 THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU ARG MET SEQRES 28 A 364 ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU LEU PHE SEQRES 1 B 364 MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU HIS LEU SEQRES 2 B 364 GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN ILE GLY SEQRES 3 B 364 PHE SER THR LEU THR MET GLU SER ASP LYS PHE ILE CYS SEQRES 4 B 364 ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL VAL ILE SEQRES 5 B 364 ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG ARG PRO SEQRES 6 B 364 ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SER LYS SEQRES 7 B 364 VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN ILE PHE SEQRES 8 B 364 ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS THR MET SEQRES 9 B 364 THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER LEU ASN SEQRES 10 B 364 THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR HIS TRP SEQRES 11 B 364 SER MET GLU GLY GLU SER GLN PRO VAL LYS MET PHE ASP SEQRES 12 B 364 ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE ASN TYR SEQRES 13 B 364 ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU THR GLY SEQRES 14 B 364 ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA MET GLN SEQRES 15 B 364 LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO ILE GLU SEQRES 16 B 364 GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET GLU GLY SEQRES 17 B 364 ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA VAL ARG SEQRES 18 B 364 GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU VAL GLY SEQRES 19 B 364 THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS LYS ALA SEQRES 20 B 364 VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN ASP PHE SEQRES 21 B 364 PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP VAL VAL SEQRES 22 B 364 PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU TYR ASP SEQRES 23 B 364 LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG ILE SER SEQRES 24 B 364 GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU ALA THR SEQRES 25 B 364 ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN VAL LEU SEQRES 26 B 364 SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO TYR ILE SEQRES 27 B 364 THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU ARG MET SEQRES 28 B 364 ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU LEU PHE SEQRES 1 E 17 VAL ASP GLY ALA ALA ASP LEU ILE ASP PHE SER VAL PRO SEQRES 2 E 17 THR ASP GLU TYR SEQRES 1 F 17 VAL ASP GLY ALA ALA ASP LEU ILE ASP PHE SER VAL PRO SEQRES 2 F 17 THR ASP GLU TYR HET PG4 A 401 13 HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 5 PG4 C8 H18 O5 FORMUL 6 HOH *465(H2 O) HELIX 1 AA1 GLN A 16 GLY A 19 5 4 HELIX 2 AA2 ASN A 21 ILE A 25 5 5 HELIX 3 AA3 HIS A 145 ALA A 149 5 5 HELIX 4 AA4 PRO A 253 GLN A 257 5 5 HELIX 5 AA5 ASN A 333 VAL A 341 1 9 HELIX 6 AA6 ASN A 344 ASN A 355 1 12 HELIX 7 AA7 GLN B 16 GLY B 19 5 4 HELIX 8 AA8 ASN B 21 ILE B 25 5 5 HELIX 9 AA9 HIS B 145 ALA B 149 5 5 HELIX 10 AB1 PRO B 253 GLN B 257 5 5 HELIX 11 AB2 ASN B 333 VAL B 341 1 9 HELIX 12 AB3 ASN B 344 ASN B 355 1 12 SHEET 1 AA1 4 ILE A 7 GLN A 14 0 SHEET 2 AA1 4 GLN A 323 VAL A 329 -1 O VAL A 324 N HIS A 12 SHEET 3 AA1 4 GLY A 314 ASN A 319 -1 N GLY A 317 O LEU A 325 SHEET 4 AA1 4 ILE A 303 HIS A 309 -1 N ALA A 307 O ILE A 316 SHEET 1 AA2 4 LEU A 30 SER A 34 0 SHEET 2 AA2 4 PHE A 37 VAL A 44 -1 O CYS A 39 N THR A 31 SHEET 3 AA2 4 GLN A 47 ASP A 54 -1 O VAL A 51 N ILE A 40 SHEET 4 AA2 4 ILE A 62 PRO A 65 -1 O ILE A 62 N ILE A 52 SHEET 1 AA3 4 SER A 70 MET A 73 0 SHEET 2 AA3 4 VAL A 79 ALA A 84 -1 O ALA A 81 N ILE A 72 SHEET 3 AA3 4 THR A 87 ASN A 92 -1 O PHE A 91 N ILE A 80 SHEET 4 AA3 4 SER A 97 THR A 103 -1 O HIS A 102 N LEU A 88 SHEET 1 AA4 4 PHE A 110 TRP A 113 0 SHEET 2 AA4 4 THR A 118 VAL A 122 -1 O ALA A 120 N LYS A 112 SHEET 3 AA4 4 ALA A 126 SER A 131 -1 O TYR A 128 N LEU A 121 SHEET 4 AA4 4 VAL A 139 ASP A 143 -1 O MET A 141 N VAL A 127 SHEET 1 AA5 4 GLN A 152 THR A 158 0 SHEET 2 AA5 4 TRP A 164 GLN A 173 -1 O LEU A 166 N ARG A 157 SHEET 3 AA5 4 ARG A 176 SER A 185 -1 O ALA A 180 N GLY A 169 SHEET 4 AA5 4 VAL A 190 GLU A 195 -1 O ILE A 194 N MET A 181 SHEET 1 AA6 4 ALA A 198 PHE A 204 0 SHEET 2 AA6 4 SER A 213 ARG A 221 -1 O CYS A 217 N SER A 200 SHEET 3 AA6 4 GLY A 226 GLU A 232 -1 O ILE A 231 N PHE A 216 SHEET 4 AA6 4 LYS A 246 VAL A 250 -1 O VAL A 248 N LEU A 228 SHEET 1 AA7 4 PRO A 261 SER A 267 0 SHEET 2 AA7 4 VAL A 272 THR A 277 -1 O PHE A 274 N GLN A 265 SHEET 3 AA7 4 TYR A 281 ASP A 286 -1 O TYR A 285 N VAL A 273 SHEET 4 AA7 4 CYS A 292 ARG A 297 -1 O ILE A 293 N LEU A 284 SHEET 1 AA8 4 ILE B 7 GLN B 14 0 SHEET 2 AA8 4 GLN B 323 VAL B 329 -1 O VAL B 324 N HIS B 12 SHEET 3 AA8 4 GLY B 314 ASN B 319 -1 N ILE B 315 O VAL B 327 SHEET 4 AA8 4 ILE B 303 HIS B 309 -1 N ALA B 307 O ILE B 316 SHEET 1 AA9 4 LEU B 30 SER B 34 0 SHEET 2 AA9 4 PHE B 37 VAL B 44 -1 O CYS B 39 N THR B 31 SHEET 3 AA9 4 GLN B 47 ASP B 54 -1 O ILE B 53 N ILE B 38 SHEET 4 AA9 4 ILE B 62 PRO B 65 -1 O ARG B 64 N VAL B 50 SHEET 1 AB1 4 SER B 70 MET B 73 0 SHEET 2 AB1 4 VAL B 79 ALA B 84 -1 O ALA B 81 N ILE B 72 SHEET 3 AB1 4 THR B 87 ASN B 92 -1 O PHE B 91 N ILE B 80 SHEET 4 AB1 4 SER B 97 THR B 103 -1 O HIS B 102 N LEU B 88 SHEET 1 AB2 4 PHE B 110 TRP B 113 0 SHEET 2 AB2 4 THR B 118 VAL B 122 -1 O ALA B 120 N LYS B 112 SHEET 3 AB2 4 ALA B 126 SER B 131 -1 O TRP B 130 N VAL B 119 SHEET 4 AB2 4 VAL B 139 ASP B 143 -1 O MET B 141 N VAL B 127 SHEET 1 AB3 4 GLN B 152 THR B 158 0 SHEET 2 AB3 4 TRP B 164 GLN B 173 -1 O LEU B 166 N ARG B 157 SHEET 3 AB3 4 ARG B 176 SER B 185 -1 O ALA B 180 N GLY B 169 SHEET 4 AB3 4 VAL B 190 GLU B 195 -1 O ILE B 194 N MET B 181 SHEET 1 AB4 4 ALA B 198 PHE B 204 0 SHEET 2 AB4 4 SER B 213 ARG B 221 -1 O LEU B 215 N ALA B 202 SHEET 3 AB4 4 GLY B 226 GLU B 232 -1 O ILE B 231 N PHE B 216 SHEET 4 AB4 4 LYS B 246 ASP B 249 -1 O VAL B 248 N LEU B 228 SHEET 1 AB5 4 PRO B 261 SER B 267 0 SHEET 2 AB5 4 VAL B 272 THR B 277 -1 O PHE B 274 N GLN B 265 SHEET 3 AB5 4 TYR B 281 ASP B 286 -1 O TYR B 285 N VAL B 273 SHEET 4 AB5 4 CYS B 292 ARG B 297 -1 O ILE B 293 N LEU B 284 SITE 1 AC1 2 PHE A 9 LEU A 325 CRYST1 137.533 128.932 78.100 90.00 115.50 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007271 0.000000 0.003468 0.00000 SCALE2 0.000000 0.007756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014186 0.00000