HEADER DNA BINDING PROTEIN 22-JAN-21 7BNR TITLE CRYSTAL STRUCTURE OF A PARB Q52A MUTANT FROM MYXOCOCCUS XANTHUS BOUND TITLE 2 TO CTPYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARB FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS (STRAIN DK 1622); SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 STRAIN: DK 1622; SOURCE 5 GENE: MXAN_7476; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA-BINDING PROTEIN, CTP, MYXOCOCCUS, DNA-SEGREGATION, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.ALTEGOER,G.BANGE REVDAT 4 31-JAN-24 7BNR 1 JRNL REVDAT 3 20-OCT-21 7BNR 1 JRNL REVDAT 2 13-OCT-21 7BNR 1 JRNL REVDAT 1 08-SEP-21 7BNR 0 JRNL AUTH M.OSORIO-VALERIANO,F.ALTEGOER,C.K.DAS,W.STEINCHEN,G.PANIS, JRNL AUTH 2 L.CONNOLLEY,G.GIACOMELLI,H.FEDDERSEN,L.CORRALES-GUERRERO, JRNL AUTH 3 P.I.GIAMMARINARO,J.HANSSMANN,M.BRAMKAMP,P.H.VIOLLIER, JRNL AUTH 4 S.MURRAY,L.V.SCHAFER,G.BANGE,M.THANBICHLER JRNL TITL THE CTPASE ACTIVITY OF PARB DETERMINES THE SIZE AND DYNAMICS JRNL TITL 2 OF PROKARYOTIC DNA PARTITION COMPLEXES. JRNL REF MOL.CELL V. 81 3992 2021 JRNL REFN ISSN 1097-2765 JRNL PMID 34562373 JRNL DOI 10.1016/J.MOLCEL.2021.09.004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.OSORIO-VALERIANO,F.ALTEGOER,C.K.DAS,W.STEINCHEN,G.PANIS, REMARK 1 AUTH 2 L.CONNOLLEY,G.GIACOMELLI,H.FEDDERSEN,L.CORRALES-GUERRERO, REMARK 1 AUTH 3 P.GIAMMARINARO,J.HANSSMANN,M.BRAMKAMP,P.H.VIOLLIER,S.MURRAY, REMARK 1 AUTH 4 L.V.SCHAFER,G.BANGE,M.THANBICHLER REMARK 1 TITL THE CTPASE ACTIVITY OF PARB ACTS AS A TIMING MECHANISM TO REMARK 1 TITL 2 CONTROL THE DYNAMICS AND FUNCTION OF PROKARYOTIC DNA REMARK 1 TITL 3 PARTITION COMPLEXES REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2021.05.05.442810 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 56269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3500 - 4.6100 1.00 2888 152 0.1779 0.2073 REMARK 3 2 4.6100 - 3.6600 1.00 2751 145 0.1504 0.1608 REMARK 3 3 3.6600 - 3.2000 1.00 2727 143 0.1735 0.2102 REMARK 3 4 3.2000 - 2.9100 1.00 2689 142 0.1875 0.2308 REMARK 3 5 2.9100 - 2.7000 1.00 2679 141 0.1929 0.2042 REMARK 3 6 2.7000 - 2.5400 1.00 2689 141 0.1959 0.2321 REMARK 3 7 2.5400 - 2.4100 1.00 2667 140 0.1931 0.2498 REMARK 3 8 2.4100 - 2.3100 1.00 2659 140 0.1858 0.2173 REMARK 3 9 2.3100 - 2.2200 1.00 2667 141 0.1796 0.1875 REMARK 3 10 2.2200 - 2.1400 1.00 2667 140 0.1805 0.2054 REMARK 3 11 2.1400 - 2.0700 1.00 2624 138 0.1915 0.2083 REMARK 3 12 2.0700 - 2.0200 1.00 2663 140 0.1920 0.2492 REMARK 3 13 2.0200 - 1.9600 1.00 2653 139 0.1877 0.2038 REMARK 3 14 1.9600 - 1.9100 1.00 2624 137 0.1879 0.2277 REMARK 3 15 1.9100 - 1.8700 1.00 2667 141 0.1885 0.2390 REMARK 3 16 1.8700 - 1.8300 1.00 2608 137 0.1974 0.2125 REMARK 3 17 1.8300 - 1.7900 1.00 2650 140 0.2175 0.2672 REMARK 3 18 1.7900 - 1.7600 1.00 2607 136 0.2401 0.2644 REMARK 3 19 1.7600 - 1.7300 1.00 2650 139 0.2519 0.3054 REMARK 3 20 1.7300 - 1.7000 1.00 2629 139 0.2594 0.2645 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.183 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3187 REMARK 3 ANGLE : 1.253 4331 REMARK 3 CHIRALITY : 0.062 501 REMARK 3 PLANARITY : 0.006 563 REMARK 3 DIHEDRAL : 9.416 485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0867 25.3698 -37.0149 REMARK 3 T TENSOR REMARK 3 T11: 0.1762 T22: 0.1829 REMARK 3 T33: 0.1337 T12: -0.0132 REMARK 3 T13: 0.0174 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.6967 L22: 6.1947 REMARK 3 L33: 1.5519 L12: -0.0091 REMARK 3 L13: -0.1872 L23: 0.2596 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0951 S13: 0.0655 REMARK 3 S21: -0.3164 S22: 0.0208 S23: -0.1828 REMARK 3 S31: -0.0495 S32: 0.0767 S33: -0.0216 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3011 12.5254 -24.4058 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.2298 REMARK 3 T33: 0.1838 T12: -0.0090 REMARK 3 T13: -0.0156 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.5746 L22: 2.5281 REMARK 3 L33: 0.5939 L12: -1.1408 REMARK 3 L13: 0.1779 L23: -0.5190 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: -0.1697 S13: -0.0801 REMARK 3 S21: 0.0812 S22: 0.0690 S23: -0.0601 REMARK 3 S31: 0.0569 S32: 0.0707 S33: 0.0042 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1409 6.8819 -4.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.5519 T22: 0.7889 REMARK 3 T33: 0.3658 T12: -0.1571 REMARK 3 T13: -0.0738 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 5.8777 L22: 4.2440 REMARK 3 L33: 4.7979 L12: 0.9210 REMARK 3 L13: 1.2222 L23: -0.3591 REMARK 3 S TENSOR REMARK 3 S11: 0.3229 S12: -0.2805 S13: 0.0475 REMARK 3 S21: 0.6799 S22: -0.3748 S23: -0.3613 REMARK 3 S31: -0.3978 S32: 1.1662 S33: 0.1045 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0289 14.5439 -21.7894 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.2197 REMARK 3 T33: 0.2170 T12: -0.0080 REMARK 3 T13: 0.0172 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.1189 L22: 4.4648 REMARK 3 L33: 2.5331 L12: 0.6878 REMARK 3 L13: -0.1885 L23: 1.6405 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: -0.2340 S13: -0.1065 REMARK 3 S21: 0.3217 S22: -0.0117 S23: 0.1711 REMARK 3 S31: 0.1258 S32: -0.0303 S33: -0.0176 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4956 6.5166 -28.2532 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.2135 REMARK 3 T33: 0.2118 T12: 0.0127 REMARK 3 T13: 0.0041 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 5.0181 L22: 2.2020 REMARK 3 L33: 6.7124 L12: 1.8698 REMARK 3 L13: 2.3591 L23: 3.7269 REMARK 3 S TENSOR REMARK 3 S11: 0.1538 S12: 0.0095 S13: -0.0358 REMARK 3 S21: 0.1488 S22: -0.0996 S23: 0.0181 REMARK 3 S31: 0.1831 S32: -0.1755 S33: 0.0536 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6060 35.8478 -17.2118 REMARK 3 T TENSOR REMARK 3 T11: 0.2676 T22: 0.2352 REMARK 3 T33: 0.2064 T12: -0.0230 REMARK 3 T13: -0.0459 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 1.9035 L22: 2.5984 REMARK 3 L33: 1.9796 L12: 0.6401 REMARK 3 L13: 0.6158 L23: 0.6527 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: -0.2423 S13: 0.2457 REMARK 3 S21: 0.4381 S22: 0.0448 S23: -0.2133 REMARK 3 S31: -0.2025 S32: 0.1578 S33: 0.0119 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 191 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3432 35.2434 -6.3572 REMARK 3 T TENSOR REMARK 3 T11: 0.5454 T22: 0.8747 REMARK 3 T33: 0.4689 T12: 0.1247 REMARK 3 T13: -0.0566 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 6.9940 L22: 7.8508 REMARK 3 L33: 9.0556 L12: -2.5692 REMARK 3 L13: 0.2481 L23: -2.4795 REMARK 3 S TENSOR REMARK 3 S11: -0.2247 S12: -0.2043 S13: 0.2618 REMARK 3 S21: 0.4497 S22: 0.2480 S23: -1.0721 REMARK 3 S31: 0.0729 S32: 1.4004 S33: 0.0683 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 220 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8384 35.3043 2.5026 REMARK 3 T TENSOR REMARK 3 T11: 0.9073 T22: 1.1071 REMARK 3 T33: 0.7138 T12: 0.1349 REMARK 3 T13: -0.1575 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 2.8714 L22: 5.9404 REMARK 3 L33: 6.7015 L12: 4.0382 REMARK 3 L13: 4.2211 L23: 6.2951 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: -0.9781 S13: 0.0904 REMARK 3 S21: 0.4906 S22: 0.4308 S23: -0.2631 REMARK 3 S31: 0.2454 S32: 0.8073 S33: -0.2215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BNK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 20% PEG 1000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.87500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.85500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.85500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.87500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 35 REMARK 465 ALA A 36 REMARK 465 SER A 232 REMARK 465 SER A 233 REMARK 465 GLY A 234 REMARK 465 LYS A 235 REMARK 465 LYS A 236 REMARK 465 ASP A 237 REMARK 465 ALA A 238 REMARK 465 GLY A 239 REMARK 465 LYS A 240 REMARK 465 ALA A 241 REMARK 465 ALA A 242 REMARK 465 PRO A 243 REMARK 465 LYS A 244 REMARK 465 GLN A 245 REMARK 465 SER A 246 REMARK 465 LYS B 35 REMARK 465 ALA B 36 REMARK 465 GLY B 37 REMARK 465 GLY B 234 REMARK 465 LYS B 235 REMARK 465 LYS B 236 REMARK 465 ASP B 237 REMARK 465 ALA B 238 REMARK 465 GLY B 239 REMARK 465 LYS B 240 REMARK 465 ALA B 241 REMARK 465 ALA B 242 REMARK 465 PRO B 243 REMARK 465 LYS B 244 REMARK 465 GLN B 245 REMARK 465 SER B 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ARG A 221 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 231 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 203 CG CD1 CD2 REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 GLN B 228 CG CD OE1 NE2 REMARK 470 ARG B 231 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O13 UFQ A 301 O HOH A 401 1.78 REMARK 500 NH1 ARG A 81 O HOH A 402 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 229 NH2 ARG B 195 4555 1.80 REMARK 500 O HOH A 517 O HOH A 531 3544 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 63 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 LYS A 63 CD - CE - NZ ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG B 221 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG B 221 NE - CZ - NH1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 221 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 LEU B 226 CB - CG - CD2 ANGL. DEV. = -18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 129 70.65 -102.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 126 OE1 REMARK 620 2 GLU A 126 OE2 62.9 REMARK 620 3 ASN A 127 OD1 91.0 100.5 REMARK 620 4 UFQ A 301 O12 101.8 161.4 89.8 REMARK 620 5 UFQ A 301 O7 163.0 102.5 83.0 94.0 REMARK 620 6 UFQ A 301 O9 98.1 88.3 169.5 83.3 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 126 OE1 REMARK 620 2 GLU B 126 OE2 57.6 REMARK 620 3 ASN B 127 OD1 87.8 95.2 REMARK 620 4 UFQ B 301 O10 99.7 91.6 171.8 REMARK 620 5 UFQ B 301 O12 103.6 159.8 91.2 83.9 REMARK 620 6 UFQ B 301 O6 159.4 105.4 81.9 91.9 94.5 REMARK 620 N 1 2 3 4 5 DBREF 7BNR A 37 231 UNP Q1CVJ4 Q1CVJ4_MYXXD 37 231 DBREF 7BNR B 37 231 UNP Q1CVJ4 Q1CVJ4_MYXXD 37 231 SEQADV 7BNR LYS A 35 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA A 36 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA A 52 UNP Q1CVJ4 GLN 52 ENGINEERED MUTATION SEQADV 7BNR SER A 232 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR SER A 233 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR GLY A 234 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR LYS A 235 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR LYS A 236 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ASP A 237 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA A 238 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR GLY A 239 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR LYS A 240 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA A 241 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA A 242 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR PRO A 243 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR LYS A 244 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR GLN A 245 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR SER A 246 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR LYS B 35 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA B 36 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA B 52 UNP Q1CVJ4 GLN 52 ENGINEERED MUTATION SEQADV 7BNR SER B 232 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR SER B 233 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR GLY B 234 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR LYS B 235 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR LYS B 236 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ASP B 237 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA B 238 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR GLY B 239 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR LYS B 240 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA B 241 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR ALA B 242 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR PRO B 243 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR LYS B 244 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR GLN B 245 UNP Q1CVJ4 EXPRESSION TAG SEQADV 7BNR SER B 246 UNP Q1CVJ4 EXPRESSION TAG SEQRES 1 A 212 LYS ALA GLY VAL LEU LYS LEU PRO ILE GLU SER ILE HIS SEQRES 2 A 212 ARG ASP LYS ASP ALA PRO ARG THR TYR PHE ASP GLU GLU SEQRES 3 A 212 LYS LEU LYS GLU LEU SER GLU SER ILE LYS ALA GLN GLY SEQRES 4 A 212 VAL LEU GLN PRO ILE LEU VAL ARG LYS ASP GLY ASP GLY SEQRES 5 A 212 TYR ARG ILE ILE ALA GLY GLU ARG ARG TRP ARG ALA SER SEQRES 6 A 212 GLN ALA ALA GLY LEU LYS GLU VAL PRO ALA ILE VAL ARG SEQRES 7 A 212 ASP VAL THR GLU VAL GLN ALA PHE GLU LEU ALA LEU VAL SEQRES 8 A 212 GLU ASN LEU GLN ARG ALA ASP LEU ASN PRO ILE GLU GLU SEQRES 9 A 212 ALA GLU GLY TYR LYS ARG LEU VAL ASP GLU PHE LYS LEU SEQRES 10 A 212 THR GLN GLU GLN VAL SER VAL ARG VAL GLY LYS GLU ARG SEQRES 11 A 212 SER THR VAL ALA ASN ALA LEU ARG LEU LEU ALA LEU PRO SEQRES 12 A 212 THR ASP VAL LYS GLY MET VAL ALA ASP GLY SER LEU SER SEQRES 13 A 212 MET GLY HIS ALA ARG ALA LEU LEU GLY VAL PRO ARG LEU SEQRES 14 A 212 PRO GLU LEU GLN ASN LEU ALA LYS GLN VAL ALA ASP LYS SEQRES 15 A 212 LYS LEU SER VAL ARG ASP THR GLU ARG LEU VAL GLN GLN SEQRES 16 A 212 SER ARG SER SER GLY LYS LYS ASP ALA GLY LYS ALA ALA SEQRES 17 A 212 PRO LYS GLN SER SEQRES 1 B 212 LYS ALA GLY VAL LEU LYS LEU PRO ILE GLU SER ILE HIS SEQRES 2 B 212 ARG ASP LYS ASP ALA PRO ARG THR TYR PHE ASP GLU GLU SEQRES 3 B 212 LYS LEU LYS GLU LEU SER GLU SER ILE LYS ALA GLN GLY SEQRES 4 B 212 VAL LEU GLN PRO ILE LEU VAL ARG LYS ASP GLY ASP GLY SEQRES 5 B 212 TYR ARG ILE ILE ALA GLY GLU ARG ARG TRP ARG ALA SER SEQRES 6 B 212 GLN ALA ALA GLY LEU LYS GLU VAL PRO ALA ILE VAL ARG SEQRES 7 B 212 ASP VAL THR GLU VAL GLN ALA PHE GLU LEU ALA LEU VAL SEQRES 8 B 212 GLU ASN LEU GLN ARG ALA ASP LEU ASN PRO ILE GLU GLU SEQRES 9 B 212 ALA GLU GLY TYR LYS ARG LEU VAL ASP GLU PHE LYS LEU SEQRES 10 B 212 THR GLN GLU GLN VAL SER VAL ARG VAL GLY LYS GLU ARG SEQRES 11 B 212 SER THR VAL ALA ASN ALA LEU ARG LEU LEU ALA LEU PRO SEQRES 12 B 212 THR ASP VAL LYS GLY MET VAL ALA ASP GLY SER LEU SER SEQRES 13 B 212 MET GLY HIS ALA ARG ALA LEU LEU GLY VAL PRO ARG LEU SEQRES 14 B 212 PRO GLU LEU GLN ASN LEU ALA LYS GLN VAL ALA ASP LYS SEQRES 15 B 212 LYS LEU SER VAL ARG ASP THR GLU ARG LEU VAL GLN GLN SEQRES 16 B 212 SER ARG SER SER GLY LYS LYS ASP ALA GLY LYS ALA ALA SEQRES 17 B 212 PRO LYS GLN SER HET UFQ A 301 29 HET GOL A 302 14 HET MG A 303 1 HET UFQ B 301 29 HET MG B 302 1 HETNAM UFQ CYTOSINE 5'-[GAMMA-THIO]TRIPHOSPHATE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN UFQ [[[(2R,3S,4R,5R)-5-(4-AZANYL-2-OXIDANYLIDENE-PYRIMIDIN- HETSYN 2 UFQ 1-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETSYN 3 UFQ PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-SULFANYL- HETSYN 4 UFQ PHOSPHINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 UFQ 2(C9 H16 N3 O13 P3 S) FORMUL 4 GOL C3 H8 O3 FORMUL 5 MG 2(MG 2+) FORMUL 8 HOH *306(H2 O) HELIX 1 AA1 ASP A 58 GLY A 73 1 16 HELIX 2 AA2 GLY A 92 ALA A 102 1 11 HELIX 3 AA3 THR A 115 GLN A 129 1 15 HELIX 4 AA4 ASN A 134 GLU A 148 1 15 HELIX 5 AA5 THR A 152 GLY A 161 1 10 HELIX 6 AA6 GLU A 163 LEU A 174 1 12 HELIX 7 AA7 PRO A 177 ASP A 186 1 10 HELIX 8 AA8 SER A 190 LEU A 198 1 9 HELIX 9 AA9 ARG A 202 LYS A 216 1 15 HELIX 10 AB1 SER A 219 ARG A 231 1 13 HELIX 11 AB2 ASP B 58 GLY B 73 1 16 HELIX 12 AB3 GLY B 92 GLY B 103 1 12 HELIX 13 AB4 THR B 115 GLN B 129 1 15 HELIX 14 AB5 ASN B 134 GLU B 148 1 15 HELIX 15 AB6 THR B 152 GLY B 161 1 10 HELIX 16 AB7 GLU B 163 LEU B 174 1 12 HELIX 17 AB8 PRO B 177 ASP B 186 1 10 HELIX 18 AB9 SER B 190 LEU B 198 1 9 HELIX 19 AC1 ARG B 202 LYS B 217 1 16 HELIX 20 AC2 SER B 219 SER B 233 1 15 SHEET 1 AA1 5 VAL A 38 PRO A 42 0 SHEET 2 AA1 5 GLU A 106 VAL A 111 -1 O ALA A 109 N LEU A 39 SHEET 3 AA1 5 ILE A 78 ASP A 83 1 N ILE A 78 O ILE A 110 SHEET 4 AA1 5 GLY A 86 ALA A 91 -1 O ILE A 90 N LEU A 79 SHEET 5 AA1 5 ILE A 46 HIS A 47 1 N HIS A 47 O TYR A 87 SHEET 1 AA2 5 LYS B 40 PRO B 42 0 SHEET 2 AA2 5 GLU B 106 VAL B 111 -1 O VAL B 107 N LEU B 41 SHEET 3 AA2 5 ILE B 78 ASP B 83 1 N ILE B 78 O ILE B 110 SHEET 4 AA2 5 GLY B 86 ALA B 91 -1 O ILE B 90 N LEU B 79 SHEET 5 AA2 5 ILE B 46 HIS B 47 1 N HIS B 47 O TYR B 87 LINK OE1 GLU A 126 MG MG A 303 1555 1555 2.07 LINK OE2 GLU A 126 MG MG A 303 1555 1555 2.13 LINK OD1 ASN A 127 MG MG A 303 1555 1555 1.97 LINK O12 UFQ A 301 MG MG A 303 1555 1555 2.36 LINK O7 UFQ A 301 MG MG A 303 1555 1555 2.12 LINK O9 UFQ A 301 MG MG A 303 1555 1555 2.15 LINK OE1 GLU B 126 MG MG B 302 1555 1555 2.26 LINK OE2 GLU B 126 MG MG B 302 1555 1555 2.30 LINK OD1 ASN B 127 MG MG B 302 1555 1555 2.07 LINK O10 UFQ B 301 MG MG B 302 1555 1555 2.17 LINK O12 UFQ B 301 MG MG B 302 1555 1555 2.36 LINK O6 UFQ B 301 MG MG B 302 1555 1555 2.16 CRYST1 45.750 80.870 135.710 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007369 0.00000