HEADER TRANSFERASE 20-MAR-20 7BOV TITLE THE STRUCTURE OF BACILLUS SUBTILIS GLYCOSYLTRANSFERASE,BS-YJIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED UDP-GLUCOSYLTRANSFERASE YJIC; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YJIC, BSU12220; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHAO,B.LIU,N.L.ZHAO,Y.Z.LUO,R.BAO REVDAT 4 29-NOV-23 7BOV 1 REMARK REVDAT 3 20-JAN-21 7BOV 1 JRNL REVDAT 2 02-DEC-20 7BOV 1 JRNL REVDAT 1 13-MAY-20 7BOV 0 JRNL AUTH B.LIU,C.ZHAO,Q.XIANG,N.ZHAO,Y.LUO,R.BAO JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF THE JRNL TITL 2 GLYCOSYLTRANSFERASE BS-YJIC FROM BACILLUS SUBTILIS. JRNL REF INT.J.BIOL.MACROMOL. V. 166 806 2021 JRNL REFN ISSN 0141-8130 JRNL PMID 33152360 JRNL DOI 10.1016/J.IJBIOMAC.2020.10.238 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 47727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6200 - 6.8700 0.96 1638 137 0.2125 0.2674 REMARK 3 2 6.8700 - 5.4600 1.00 1658 146 0.2319 0.2669 REMARK 3 3 5.4600 - 4.7700 0.99 1656 143 0.1758 0.1926 REMARK 3 4 4.7700 - 4.3300 0.95 1574 130 0.1531 0.1785 REMARK 3 5 4.3300 - 4.0200 1.00 1686 145 0.1705 0.2488 REMARK 3 6 4.0200 - 3.7900 1.00 1679 139 0.1798 0.2093 REMARK 3 7 3.7900 - 3.6000 0.99 1680 147 0.1917 0.2212 REMARK 3 8 3.6000 - 3.4400 0.99 1665 143 0.2001 0.2118 REMARK 3 9 3.4400 - 3.3100 1.00 1652 143 0.2111 0.2676 REMARK 3 10 3.3100 - 3.1900 0.92 1559 133 0.2280 0.2706 REMARK 3 11 3.1900 - 3.0900 0.97 1658 138 0.2536 0.2828 REMARK 3 12 3.0900 - 3.0000 0.98 1634 141 0.2440 0.2956 REMARK 3 13 3.0000 - 2.9300 0.99 1636 142 0.2569 0.2822 REMARK 3 14 2.9300 - 2.8500 0.98 1647 136 0.2785 0.2393 REMARK 3 15 2.8500 - 2.7900 0.99 1683 145 0.2895 0.3365 REMARK 3 16 2.7900 - 2.7300 0.99 1628 142 0.2785 0.2755 REMARK 3 17 2.7300 - 2.6800 0.97 1633 142 0.2955 0.3136 REMARK 3 18 2.6800 - 2.6200 0.99 1640 146 0.3105 0.3317 REMARK 3 19 2.6200 - 2.5800 0.98 1642 142 0.3291 0.3627 REMARK 3 20 2.5800 - 2.5300 0.98 1647 134 0.3424 0.4007 REMARK 3 21 2.5300 - 2.4900 0.97 1623 140 0.3452 0.3813 REMARK 3 22 2.4900 - 2.4600 0.87 1462 126 0.3530 0.4141 REMARK 3 23 2.4600 - 2.4200 0.95 1629 139 0.3487 0.3174 REMARK 3 24 2.4200 - 2.3800 0.97 1588 131 0.3510 0.4088 REMARK 3 25 2.3800 - 2.3500 0.97 1595 139 0.3685 0.3233 REMARK 3 26 2.3520 - 2.3220 0.94 1617 140 0.3692 0.3613 REMARK 3 27 2.3220 - 2.2930 0.91 1556 133 0.3958 0.3542 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.385 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2859 REMARK 3 ANGLE : 1.685 3859 REMARK 3 CHIRALITY : 0.116 435 REMARK 3 PLANARITY : 0.010 501 REMARK 3 DIHEDRAL : 25.464 1083 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1058 -19.9806 -13.1297 REMARK 3 T TENSOR REMARK 3 T11: 1.1289 T22: 0.9827 REMARK 3 T33: 0.6867 T12: -0.1073 REMARK 3 T13: 0.1789 T23: -0.1300 REMARK 3 L TENSOR REMARK 3 L11: 5.7593 L22: 4.1051 REMARK 3 L33: 6.5076 L12: 1.3648 REMARK 3 L13: 1.3337 L23: -0.7676 REMARK 3 S TENSOR REMARK 3 S11: 0.3171 S12: -1.4279 S13: 0.2207 REMARK 3 S21: 1.6842 S22: -0.1181 S23: -0.3731 REMARK 3 S31: -0.7497 S32: 0.6804 S33: -0.2350 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4147 -17.0035 -32.9553 REMARK 3 T TENSOR REMARK 3 T11: 0.4676 T22: 0.4063 REMARK 3 T33: 0.4107 T12: 0.0305 REMARK 3 T13: 0.0462 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 6.9250 L22: 3.4454 REMARK 3 L33: 2.5054 L12: 1.2589 REMARK 3 L13: -2.2744 L23: -0.0334 REMARK 3 S TENSOR REMARK 3 S11: 0.4365 S12: -0.5449 S13: 0.5714 REMARK 3 S21: 0.7338 S22: -0.0447 S23: 0.5742 REMARK 3 S31: -0.6179 S32: -0.0405 S33: -0.3199 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7577 -18.4036 -39.1356 REMARK 3 T TENSOR REMARK 3 T11: 0.2795 T22: 0.2219 REMARK 3 T33: 0.3733 T12: -0.0004 REMARK 3 T13: -0.0528 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 4.1837 L22: 4.0723 REMARK 3 L33: 4.0159 L12: 0.4402 REMARK 3 L13: -1.5917 L23: -0.5278 REMARK 3 S TENSOR REMARK 3 S11: 0.1090 S12: -0.3332 S13: 0.5551 REMARK 3 S21: 0.5134 S22: -0.0197 S23: -0.1255 REMARK 3 S31: -0.4212 S32: 0.1389 S33: -0.1295 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.293 REMARK 200 RESOLUTION RANGE LOW (A) : 39.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IYA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2MM PHLORETIN;5MM GDP; 30% PEG REMARK 280 3350;150MM NACL;100MM BIS-TRIS, PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.94100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.21650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 92.04900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.94100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.21650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.04900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.94100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.21650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.04900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.94100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.21650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.04900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 541 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 57 REMARK 465 THR A 58 REMARK 465 SER A 59 REMARK 465 LEU A 60 REMARK 465 ASN A 61 REMARK 465 ILE A 62 REMARK 465 ASP A 63 REMARK 465 PRO A 64 REMARK 465 LYS A 65 REMARK 465 GLN A 66 REMARK 465 ILE A 67 REMARK 465 ARG A 68 REMARK 465 GLU A 69 REMARK 465 MET A 70 REMARK 465 MET A 71 REMARK 465 ALA A 156 REMARK 465 TYR A 157 REMARK 465 LEU A 158 REMARK 465 GLU A 159 REMARK 465 GLN A 160 REMARK 465 GLU A 161 REMARK 465 LYS A 162 REMARK 465 LEU A 163 REMARK 465 PRO A 164 REMARK 465 ALA A 165 REMARK 465 VAL A 166 REMARK 465 SER A 167 REMARK 465 PHE A 168 REMARK 465 ALA A 389 REMARK 465 VAL A 390 REMARK 465 PRO A 391 REMARK 465 GLN A 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 148 O GLU A 169 1.23 REMARK 500 O HOH A 515 O HOH A 528 1.30 REMARK 500 O HOH A 517 O HOH A 540 1.69 REMARK 500 NE2 GLN A 280 O HOH A 501 1.71 REMARK 500 OG SER A 129 OE2 GLU A 317 1.77 REMARK 500 CG1 VAL A 173 O HOH A 552 1.78 REMARK 500 CE LYS A 113 OE2 GLU A 117 1.79 REMARK 500 O LEU A 81 N SER A 84 1.91 REMARK 500 O HOH A 570 O HOH A 576 1.91 REMARK 500 O THR A 38 O ILE A 55 1.91 REMARK 500 O HOH A 558 O HOH A 564 1.94 REMARK 500 O HOH A 535 O HOH A 536 1.97 REMARK 500 O GLU A 92 CD2 TYR A 95 1.98 REMARK 500 O HOH A 512 O HOH A 519 2.04 REMARK 500 O PRO A 19 OG SER A 203 2.07 REMARK 500 O TYR A 36 CB ALA A 53 2.10 REMARK 500 O HOH A 501 O HOH A 529 2.11 REMARK 500 NZ LYS A 336 O HOH A 502 2.12 REMARK 500 OE1 GLU A 327 O HOH A 503 2.14 REMARK 500 CA GLU A 40 CG2 ILE A 55 2.14 REMARK 500 O VAL A 17 OG1 THR A 20 2.14 REMARK 500 NZ LYS A 125 O HOH A 504 2.16 REMARK 500 N GLU A 40 CG2 ILE A 55 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 ILE A 215 O ASP A 216 2555 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 55 N - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 PRO A 77 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 ILE A 147 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 218 1.66 88.78 REMARK 500 ASP A 219 6.05 83.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 578 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 579 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 580 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 581 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 582 DISTANCE = 8.83 ANGSTROMS REMARK 525 HOH A 583 DISTANCE = 9.01 ANGSTROMS REMARK 525 HOH A 584 DISTANCE = 10.03 ANGSTROMS REMARK 525 HOH A 585 DISTANCE = 10.29 ANGSTROMS REMARK 525 HOH A 586 DISTANCE = 13.24 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 DBREF 7BOV A 1 392 UNP O34539 YJIC_BACSU 1 392 SEQRES 1 A 392 MET LYS LYS TYR HIS ILE SER MET ILE ASN ILE PRO ALA SEQRES 2 A 392 TYR GLY HIS VAL ASN PRO THR LEU ALA LEU VAL GLU LYS SEQRES 3 A 392 LEU CYS GLU LYS GLY HIS ARG VAL THR TYR ALA THR THR SEQRES 4 A 392 GLU GLU PHE ALA PRO ALA VAL GLN GLN ALA GLY GLY GLU SEQRES 5 A 392 ALA LEU ILE TYR HIS THR SER LEU ASN ILE ASP PRO LYS SEQRES 6 A 392 GLN ILE ARG GLU MET MET GLU LYS ASN ASP ALA PRO LEU SEQRES 7 A 392 SER LEU LEU LYS GLU SER LEU SER ILE LEU PRO GLN LEU SEQRES 8 A 392 GLU GLU LEU TYR LYS ASP ASP GLN PRO ASP LEU ILE ILE SEQRES 9 A 392 TYR ASP PHE VAL ALA LEU ALA GLY LYS LEU PHE ALA GLU SEQRES 10 A 392 LYS LEU ASN VAL PRO VAL ILE LYS LEU CYS SER SER TYR SEQRES 11 A 392 ALA GLN ASN GLU SER PHE GLN LEU GLY ASN GLU ASP MET SEQRES 12 A 392 LEU LYS LYS ILE ARG GLU ALA GLU ALA GLU PHE LYS ALA SEQRES 13 A 392 TYR LEU GLU GLN GLU LYS LEU PRO ALA VAL SER PHE GLU SEQRES 14 A 392 GLN LEU ALA VAL PRO GLU ALA LEU ASN ILE VAL PHE MET SEQRES 15 A 392 PRO LYS SER PHE GLN ILE GLN HIS GLU THR PHE ASP ASP SEQRES 16 A 392 ARG PHE CYS PHE VAL GLY PRO SER LEU GLY GLU ARG LYS SEQRES 17 A 392 GLU LYS GLU SER LEU LEU ILE ASP LYS ASP ASP ARG PRO SEQRES 18 A 392 LEU MET LEU ILE SER LEU GLY THR ALA PHE ASN ALA TRP SEQRES 19 A 392 PRO GLU PHE TYR LYS MET CYS ILE LYS ALA PHE ARG ASP SEQRES 20 A 392 SER SER TRP GLN VAL ILE MET SER VAL GLY LYS THR ILE SEQRES 21 A 392 ASP PRO GLU SER LEU GLU ASP ILE PRO ALA ASN PHE THR SEQRES 22 A 392 ILE ARG GLN SER VAL PRO GLN LEU GLU VAL LEU GLU LYS SEQRES 23 A 392 ALA ASP LEU PHE ILE SER HIS GLY GLY MET ASN SER THR SEQRES 24 A 392 MET GLU ALA MET ASN ALA GLY VAL PRO LEU VAL VAL ILE SEQRES 25 A 392 PRO GLN MET TYR GLU GLN GLU LEU THR ALA ASN ARG VAL SEQRES 26 A 392 ASP GLU LEU GLY LEU GLY VAL TYR LEU PRO LYS GLU GLU SEQRES 27 A 392 VAL THR VAL SER SER LEU GLN GLU ALA VAL GLN ALA VAL SEQRES 28 A 392 SER SER ASP GLN GLU LEU LEU SER ARG VAL LYS ASN MET SEQRES 29 A 392 GLN LYS ASP VAL LYS GLU ALA GLY GLY ALA GLU ARG ALA SEQRES 30 A 392 ALA ALA GLU ILE GLU ALA PHE MET LYS LYS SER ALA VAL SEQRES 31 A 392 PRO GLN HET NA A 401 1 HET GOL A 402 6 HET GOL A 403 6 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA NA 1+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *86(H2 O) HELIX 1 AA1 ALA A 13 GLY A 31 1 19 HELIX 2 AA2 THR A 39 GLU A 41 5 3 HELIX 3 AA3 PHE A 42 ALA A 49 1 8 HELIX 4 AA4 LEU A 80 GLU A 93 1 14 HELIX 5 AA5 LEU A 94 LYS A 96 5 3 HELIX 6 AA6 ALA A 109 ASN A 120 1 12 HELIX 7 AA7 ASN A 140 LYS A 146 1 7 HELIX 8 AA8 GLN A 189 PHE A 193 5 5 HELIX 9 AA9 TRP A 234 ARG A 246 1 13 HELIX 10 AB1 ASP A 261 LEU A 265 5 5 HELIX 11 AB2 PRO A 279 GLU A 285 1 7 HELIX 12 AB3 GLY A 295 GLY A 306 1 12 HELIX 13 AB4 MET A 315 LEU A 328 1 14 HELIX 14 AB5 PRO A 335 VAL A 339 5 5 HELIX 15 AB6 THR A 340 ASP A 354 1 15 HELIX 16 AB7 ASP A 354 ALA A 371 1 18 HELIX 17 AB8 GLY A 372 SER A 388 1 17 SHEET 1 AA1 6 ARG A 33 ALA A 37 0 SHEET 2 AA1 6 HIS A 5 ILE A 9 1 N ILE A 6 O ARG A 33 SHEET 3 AA1 6 LEU A 102 ASP A 106 1 O ASP A 106 N ILE A 9 SHEET 4 AA1 6 VAL A 123 CYS A 127 1 O LEU A 126 N TYR A 105 SHEET 5 AA1 6 ASN A 178 VAL A 180 1 O ILE A 179 N CYS A 127 SHEET 6 AA1 6 PHE A 197 PHE A 199 1 O CYS A 198 N VAL A 180 SHEET 1 AA2 6 PHE A 272 ARG A 275 0 SHEET 2 AA2 6 GLN A 251 SER A 255 1 N MET A 254 O THR A 273 SHEET 3 AA2 6 LEU A 222 SER A 226 1 N MET A 223 O GLN A 251 SHEET 4 AA2 6 LEU A 289 SER A 292 1 O ILE A 291 N LEU A 224 SHEET 5 AA2 6 LEU A 309 VAL A 311 1 O VAL A 310 N SER A 292 SHEET 6 AA2 6 GLY A 331 TYR A 333 1 O VAL A 332 N VAL A 311 SITE 1 AC1 6 ILE A 188 GLN A 189 HIS A 190 GLU A 191 SITE 2 AC1 6 ARG A 324 GLU A 346 SITE 1 AC2 2 LYS A 336 GLU A 356 CRYST1 51.882 118.433 184.098 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005432 0.00000