HEADER BIOSYNTHETIC PROTEIN 24-MAR-20 7BQJ TITLE THE STRUCTURE OF PDXI COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSF_2 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PDXI; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS BOMBYCIS; SOURCE 3 ORGANISM_TAXID: 109264; SOURCE 4 GENE: ABOM_002889; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PERICYCLASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.CAI,M.OHASHI,J.H.ZHOU,Y.TANG REVDAT 2 27-MAR-24 7BQJ 1 REMARK REVDAT 1 14-OCT-20 7BQJ 0 JRNL AUTH M.OHASHI,C.S.JAMIESON,Y.CAI,D.TAN,D.KANAYAMA,M.C.TANG, JRNL AUTH 2 S.M.ANTHONY,J.V.CHARI,J.S.BARBER,E.PICAZO,T.B.KAKULE,S.CAO, JRNL AUTH 3 N.K.GARG,J.ZHOU,K.N.HOUK,Y.TANG JRNL TITL AN ENZYMATIC ALDER-ENE REACTION. JRNL REF NATURE V. 586 64 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32999480 JRNL DOI 10.1038/S41586-020-2743-5 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 80256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7880 - 6.0571 0.99 2946 134 0.1588 0.1759 REMARK 3 2 6.0571 - 4.8100 1.00 2753 163 0.1666 0.2194 REMARK 3 3 4.8100 - 4.2026 1.00 2726 144 0.1394 0.1567 REMARK 3 4 4.2026 - 3.8186 1.00 2703 147 0.1579 0.1673 REMARK 3 5 3.8186 - 3.5451 1.00 2668 163 0.1749 0.1877 REMARK 3 6 3.5451 - 3.3362 1.00 2658 146 0.1820 0.2009 REMARK 3 7 3.3362 - 3.1692 1.00 2687 128 0.1832 0.2071 REMARK 3 8 3.1692 - 3.0312 1.00 2669 134 0.1937 0.2369 REMARK 3 9 3.0312 - 2.9146 1.00 2644 141 0.1934 0.2060 REMARK 3 10 2.9146 - 2.8140 1.00 2635 133 0.1947 0.2255 REMARK 3 11 2.8140 - 2.7261 1.00 2631 157 0.1957 0.2329 REMARK 3 12 2.7261 - 2.6481 1.00 2650 138 0.1952 0.2334 REMARK 3 13 2.6481 - 2.5784 1.00 2616 135 0.1958 0.2048 REMARK 3 14 2.5784 - 2.5155 1.00 2657 137 0.1962 0.2067 REMARK 3 15 2.5155 - 2.4584 1.00 2614 139 0.1920 0.2031 REMARK 3 16 2.4584 - 2.4060 1.00 2617 147 0.1957 0.2272 REMARK 3 17 2.4060 - 2.3579 1.00 2606 134 0.1954 0.2423 REMARK 3 18 2.3579 - 2.3134 1.00 2653 125 0.1965 0.2393 REMARK 3 19 2.3134 - 2.2721 1.00 2636 138 0.1916 0.2334 REMARK 3 20 2.2721 - 2.2336 1.00 2575 121 0.2016 0.2098 REMARK 3 21 2.2336 - 2.1976 1.00 2619 157 0.2028 0.2489 REMARK 3 22 2.1976 - 2.1638 0.99 2557 139 0.2020 0.2308 REMARK 3 23 2.1638 - 2.1319 0.98 2571 133 0.2017 0.2530 REMARK 3 24 2.1319 - 2.1019 0.98 2560 150 0.2092 0.2403 REMARK 3 25 2.1019 - 2.0735 0.97 2498 127 0.2176 0.2685 REMARK 3 26 2.0735 - 2.0466 0.97 2563 133 0.2171 0.2332 REMARK 3 27 2.0466 - 2.0210 0.97 2517 132 0.2187 0.2608 REMARK 3 28 2.0210 - 1.9967 0.97 2532 140 0.2252 0.2895 REMARK 3 29 1.9967 - 1.9800 0.94 2470 110 0.2505 0.2815 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 7433 REMARK 3 ANGLE : 1.083 10070 REMARK 3 CHIRALITY : 0.094 1088 REMARK 3 PLANARITY : 0.007 1309 REMARK 3 DIHEDRAL : 4.788 6161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 THROUGH 77 OR RESID REMARK 3 79 THROUGH 98 OR RESID 100 THROUGH 377 OR REMARK 3 RESID 384 THROUGH 459)) REMARK 3 SELECTION : (CHAIN B AND (RESID 2 THROUGH 77 OR RESID REMARK 3 79 THROUGH 98 OR RESID 100 THROUGH 377 OR REMARK 3 RESID 384 THROUGH 459)) REMARK 3 ATOM PAIRS NUMBER : 4356 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : 0.30300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 2.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.12_2829 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8000, 40MM POTASSIUM PHOSPHATE REMARK 280 MONOBASIC, 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.20200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.58150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.58150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.60100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.58150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.58150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 220.80300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.58150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.58150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.60100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.58150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.58150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 220.80300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 147.20200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 378 REMARK 465 VAL A 379 REMARK 465 ILE A 380 REMARK 465 ASN A 381 REMARK 465 GLY A 382 REMARK 465 GLU A 460 REMARK 465 MET B 1 REMARK 465 GLY B 382 REMARK 465 ARG B 383 REMARK 465 GLU B 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS B 74 OD1 ASN B 78 1.68 REMARK 500 OD1 ASN A 78 ND2 ASN B 78 1.77 REMARK 500 CE1 HIS B 74 OD1 ASN B 78 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 132 168.55 66.70 REMARK 500 GLU A 165 -68.48 -130.07 REMARK 500 TYR A 170 -62.81 -126.01 REMARK 500 ILE A 267 -117.90 58.55 REMARK 500 ILE A 385 -74.07 -95.76 REMARK 500 PHE B 132 169.13 65.39 REMARK 500 GLU B 165 -69.30 -129.26 REMARK 500 TYR B 170 -64.25 -125.47 REMARK 500 ILE B 267 -113.84 56.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 315 O REMARK 620 2 HOH A 693 O 94.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 DBREF1 7BQJ A 1 460 UNP A0A1F8A906_9EURO DBREF2 7BQJ A A0A1F8A906 1 460 DBREF1 7BQJ B 1 460 UNP A0A1F8A906_9EURO DBREF2 7BQJ B A0A1F8A906 1 460 SEQRES 1 A 460 MET VAL THR LEU ALA GLU LEU ALA SER ASP ILE GLN SER SEQRES 2 A 460 GLN VAL LYS VAL ILE ASP THR TYR LEU THR GLU HIS ASN SEQRES 3 A 460 LEU PRO GLN PRO THR PHE ALA PRO ASP SER PRO ARG GLU SEQRES 4 A 460 LEU PRO LEU ASP ALA ASN VAL GLN ARG ALA ARG LEU LEU SEQRES 5 A 460 LEU ILE GLU LYS ALA MET ALA LEU SER ASN LEU ALA ILE SEQRES 6 A 460 GLY ALA ALA ASP ASN LEU ARG TRP HIS CYS MET ASN ASN SEQRES 7 A 460 LYS PHE ASP ASP MET THR LEU HIS PHE LEU ALA ARG TYR SEQRES 8 A 460 ASN ILE PHE ASP ALA VAL PRO ARG ASP GLU PRO ILE SER SEQRES 9 A 460 TYR ALA GLU LEU SER LYS LYS VAL GLY LEU ALA GLU HIS SEQRES 10 A 460 ARG LEU ARG ARG ILE MET SER MET ALA TYR THR GLN HIS SEQRES 11 A 460 TYR PHE CYS THR PRO LYS PRO GLY PHE VAL ALA HIS THR SEQRES 12 A 460 SER ASN SER ALA MET ALA ILE GLY ASP PRO LEU ALA LEU SEQRES 13 A 460 ALA TRP ILE LEU HIS ASN ILE GLU GLU VAL GLN PRO TRP SEQRES 14 A 460 TYR SER ASN LYS LEU VAL ASP ALA THR MET LYS TRP GLY SEQRES 15 A 460 ASP SER ILE ASP PRO LYS HIS THR GLY PRO ASN LEU ASN SEQRES 16 A 460 ALA LYS PRO GLY GLU GLU LYS LEU PHE TYR GLU ILE MET SEQRES 17 A 460 GLU GLU ASP ASP GLN GLY GLU TRP ASN GLY VAL LYS GLY SEQRES 18 A 460 LYS GLY PHE ARG LEU TRP ARG LEU TYR ASP THR ASP LYS SEQRES 19 A 460 PHE PHE GLY THR GLY GLY ALA ILE LYS GLY THR ASN LEU SEQRES 20 A 460 LEU ARG ALA PHE ASP TRP GLY GLY LEU GLY LYS ALA THR SEQRES 21 A 460 VAL VAL ASP ILE GLY GLY ILE THR GLY HIS LEU ALA SER SEQRES 22 A 460 THR VAL ALA LEU ALA ASN PRO ASP LEU THR PHE ILE VAL SEQRES 23 A 460 GLN GLU ARG ASN GLN PRO TRP TYR GLU LYS GLN PHE TYR SEQRES 24 A 460 GLU GLN LEU PRO ALA GLU LEU ASN GLY ARG VAL SER TYR SEQRES 25 A 460 MET PRO HIS ASP LYS TYR ALA GLU GLN PRO VAL LYS GLY SEQRES 26 A 460 ALA ASP VAL TYR PHE MET SER THR VAL LEU HIS LYS GLU SEQRES 27 A 460 PRO ASP ASP LYS ALA ILE THR ILE LEU ARG ARG CYS VAL SEQRES 28 A 460 GLU ALA MET ASP PRO ASN LYS SER ARG LEU LEU THR ARG SEQRES 29 A 460 ASP ILE VAL MET ASP GLY GLY ASP PRO PRO ALA GLU ASP SEQRES 30 A 460 ALA VAL ILE ASN GLY ARG ALA ILE ASN SER LYS GLU GLY SEQRES 31 A 460 SER TYR GLU ALA GLY LEU GLY PRO THR GLY VAL ILE THR SEQRES 32 A 460 ARG LEU ASN ILE GLY ILE ASP PHE GLN VAL LEU ALA VAL SEQRES 33 A 460 VAL ASN GLY PHE GLU ARG THR ARG GLU GLU TRP VAL THR SEQRES 34 A 460 LEU PHE LYS LYS ALA ASP PRO ARG PHE ALA LEU LYS GLY SEQRES 35 A 460 CYS ILE GLN THR VAL GLY ASN CYS ALA ALA LEU MET GLU SEQRES 36 A 460 TRP ILE LEU GLU GLU SEQRES 1 B 460 MET VAL THR LEU ALA GLU LEU ALA SER ASP ILE GLN SER SEQRES 2 B 460 GLN VAL LYS VAL ILE ASP THR TYR LEU THR GLU HIS ASN SEQRES 3 B 460 LEU PRO GLN PRO THR PHE ALA PRO ASP SER PRO ARG GLU SEQRES 4 B 460 LEU PRO LEU ASP ALA ASN VAL GLN ARG ALA ARG LEU LEU SEQRES 5 B 460 LEU ILE GLU LYS ALA MET ALA LEU SER ASN LEU ALA ILE SEQRES 6 B 460 GLY ALA ALA ASP ASN LEU ARG TRP HIS CYS MET ASN ASN SEQRES 7 B 460 LYS PHE ASP ASP MET THR LEU HIS PHE LEU ALA ARG TYR SEQRES 8 B 460 ASN ILE PHE ASP ALA VAL PRO ARG ASP GLU PRO ILE SER SEQRES 9 B 460 TYR ALA GLU LEU SER LYS LYS VAL GLY LEU ALA GLU HIS SEQRES 10 B 460 ARG LEU ARG ARG ILE MET SER MET ALA TYR THR GLN HIS SEQRES 11 B 460 TYR PHE CYS THR PRO LYS PRO GLY PHE VAL ALA HIS THR SEQRES 12 B 460 SER ASN SER ALA MET ALA ILE GLY ASP PRO LEU ALA LEU SEQRES 13 B 460 ALA TRP ILE LEU HIS ASN ILE GLU GLU VAL GLN PRO TRP SEQRES 14 B 460 TYR SER ASN LYS LEU VAL ASP ALA THR MET LYS TRP GLY SEQRES 15 B 460 ASP SER ILE ASP PRO LYS HIS THR GLY PRO ASN LEU ASN SEQRES 16 B 460 ALA LYS PRO GLY GLU GLU LYS LEU PHE TYR GLU ILE MET SEQRES 17 B 460 GLU GLU ASP ASP GLN GLY GLU TRP ASN GLY VAL LYS GLY SEQRES 18 B 460 LYS GLY PHE ARG LEU TRP ARG LEU TYR ASP THR ASP LYS SEQRES 19 B 460 PHE PHE GLY THR GLY GLY ALA ILE LYS GLY THR ASN LEU SEQRES 20 B 460 LEU ARG ALA PHE ASP TRP GLY GLY LEU GLY LYS ALA THR SEQRES 21 B 460 VAL VAL ASP ILE GLY GLY ILE THR GLY HIS LEU ALA SER SEQRES 22 B 460 THR VAL ALA LEU ALA ASN PRO ASP LEU THR PHE ILE VAL SEQRES 23 B 460 GLN GLU ARG ASN GLN PRO TRP TYR GLU LYS GLN PHE TYR SEQRES 24 B 460 GLU GLN LEU PRO ALA GLU LEU ASN GLY ARG VAL SER TYR SEQRES 25 B 460 MET PRO HIS ASP LYS TYR ALA GLU GLN PRO VAL LYS GLY SEQRES 26 B 460 ALA ASP VAL TYR PHE MET SER THR VAL LEU HIS LYS GLU SEQRES 27 B 460 PRO ASP ASP LYS ALA ILE THR ILE LEU ARG ARG CYS VAL SEQRES 28 B 460 GLU ALA MET ASP PRO ASN LYS SER ARG LEU LEU THR ARG SEQRES 29 B 460 ASP ILE VAL MET ASP GLY GLY ASP PRO PRO ALA GLU ASP SEQRES 30 B 460 ALA VAL ILE ASN GLY ARG ALA ILE ASN SER LYS GLU GLY SEQRES 31 B 460 SER TYR GLU ALA GLY LEU GLY PRO THR GLY VAL ILE THR SEQRES 32 B 460 ARG LEU ASN ILE GLY ILE ASP PHE GLN VAL LEU ALA VAL SEQRES 33 B 460 VAL ASN GLY PHE GLU ARG THR ARG GLU GLU TRP VAL THR SEQRES 34 B 460 LEU PHE LYS LYS ALA ASP PRO ARG PHE ALA LEU LYS GLY SEQRES 35 B 460 CYS ILE GLN THR VAL GLY ASN CYS ALA ALA LEU MET GLU SEQRES 36 B 460 TRP ILE LEU GLU GLU HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET NA A 509 1 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 GOL 9(C3 H8 O3) FORMUL 11 NA NA 1+ FORMUL 16 HOH *467(H2 O) HELIX 1 AA1 THR A 3 HIS A 25 1 23 HELIX 2 AA2 ASP A 43 TYR A 91 1 49 HELIX 3 AA3 ASN A 92 VAL A 97 1 6 HELIX 4 AA4 TYR A 105 GLY A 113 1 9 HELIX 5 AA5 ALA A 115 GLN A 129 1 15 HELIX 6 AA6 THR A 143 MET A 148 1 6 HELIX 7 AA7 ASP A 152 GLU A 165 1 14 HELIX 8 AA8 GLU A 165 TYR A 170 1 6 HELIX 9 AA9 LYS A 173 GLY A 182 1 10 HELIX 10 AB1 THR A 190 LEU A 194 5 5 HELIX 11 AB2 LEU A 203 ASP A 211 1 9 HELIX 12 AB3 GLY A 223 GLY A 239 1 17 HELIX 13 AB4 THR A 245 PHE A 251 1 7 HELIX 14 AB5 TRP A 253 GLY A 257 5 5 HELIX 15 AB6 GLY A 269 ASN A 279 1 11 HELIX 16 AB7 TRP A 293 LEU A 302 1 10 HELIX 17 AB8 PRO A 303 ASN A 307 5 5 HELIX 18 AB9 VAL A 334 GLU A 338 5 5 HELIX 19 AC1 PRO A 339 MET A 354 1 16 HELIX 20 AC2 GLY A 400 ASN A 418 1 19 HELIX 21 AC3 THR A 423 ASP A 435 1 13 HELIX 22 AC4 THR B 3 HIS B 25 1 23 HELIX 23 AC5 ASP B 43 GLY B 66 1 24 HELIX 24 AC6 GLY B 66 TYR B 91 1 26 HELIX 25 AC7 ASN B 92 VAL B 97 1 6 HELIX 26 AC8 TYR B 105 GLY B 113 1 9 HELIX 27 AC9 ALA B 115 GLN B 129 1 15 HELIX 28 AD1 THR B 143 MET B 148 1 6 HELIX 29 AD2 ASP B 152 GLU B 165 1 14 HELIX 30 AD3 GLU B 165 TYR B 170 1 6 HELIX 31 AD4 LYS B 173 GLY B 182 1 10 HELIX 32 AD5 THR B 190 LEU B 194 5 5 HELIX 33 AD6 LEU B 203 ASP B 211 1 9 HELIX 34 AD7 GLY B 223 THR B 238 1 16 HELIX 35 AD8 THR B 245 PHE B 251 1 7 HELIX 36 AD9 TRP B 253 GLY B 257 5 5 HELIX 37 AE1 GLY B 269 ASN B 279 1 11 HELIX 38 AE2 TRP B 293 LEU B 302 1 10 HELIX 39 AE3 PRO B 303 ASN B 307 5 5 HELIX 40 AE4 VAL B 334 GLU B 338 5 5 HELIX 41 AE5 PRO B 339 MET B 354 1 16 HELIX 42 AE6 PRO B 374 ASN B 381 1 8 HELIX 43 AE7 GLY B 400 ASN B 418 1 19 HELIX 44 AE8 THR B 423 ASP B 435 1 13 SHEET 1 AA1 2 ILE A 103 SER A 104 0 SHEET 2 AA1 2 PHE A 139 VAL A 140 -1 O VAL A 140 N ILE A 103 SHEET 1 AA2 2 GLU A 215 TRP A 216 0 SHEET 2 AA2 2 VAL A 219 LYS A 220 -1 O VAL A 219 N TRP A 216 SHEET 1 AA3 7 VAL A 310 PRO A 314 0 SHEET 2 AA3 7 LEU A 282 GLU A 288 1 N VAL A 286 O SER A 311 SHEET 3 AA3 7 ALA A 259 ILE A 264 1 N VAL A 261 O THR A 283 SHEET 4 AA3 7 VAL A 328 SER A 332 1 O PHE A 330 N VAL A 262 SHEET 5 AA3 7 ARG A 360 ILE A 366 1 O LEU A 362 N TYR A 329 SHEET 6 AA3 7 ALA A 451 LEU A 458 -1 O MET A 454 N THR A 363 SHEET 7 AA3 7 PHE A 438 ILE A 444 -1 N LYS A 441 O GLU A 455 SHEET 1 AA4 2 ILE B 103 SER B 104 0 SHEET 2 AA4 2 PHE B 139 VAL B 140 -1 O VAL B 140 N ILE B 103 SHEET 1 AA5 2 GLU B 215 TRP B 216 0 SHEET 2 AA5 2 VAL B 219 LYS B 220 -1 O VAL B 219 N TRP B 216 SHEET 1 AA6 7 VAL B 310 PRO B 314 0 SHEET 2 AA6 7 LEU B 282 GLU B 288 1 N VAL B 286 O SER B 311 SHEET 3 AA6 7 ALA B 259 ILE B 264 1 N VAL B 261 O THR B 283 SHEET 4 AA6 7 VAL B 328 SER B 332 1 O PHE B 330 N VAL B 262 SHEET 5 AA6 7 ARG B 360 ILE B 366 1 O LEU B 362 N TYR B 329 SHEET 6 AA6 7 ALA B 451 LEU B 458 -1 O MET B 454 N THR B 363 SHEET 7 AA6 7 PHE B 438 ILE B 444 -1 N LYS B 441 O GLU B 455 LINK O HIS A 315 NA NA A 509 1555 1555 3.17 LINK NA NA A 509 O HOH A 693 1555 1555 2.88 SITE 1 AC1 3 HIS A 161 TYR A 205 GLN A 412 SITE 1 AC2 3 ARG A 424 LEU A 440 LYS A 441 SITE 1 AC3 3 GLN A 14 ASN A 45 LEU A 52 SITE 1 AC4 4 TRP A 169 PRO A 192 HOH A 665 HOH A 727 SITE 1 AC5 6 ALA A 68 ARG A 72 ARG B 38 HOH B 603 SITE 2 AC5 6 HOH B 653 HOH B 699 SITE 1 AC6 5 TYR A 205 GLU A 209 TYR A 230 GLU A 288 SITE 2 AC6 5 GLN A 291 SITE 1 AC7 7 PRO A 187 TYR A 318 LYS A 337 GLU A 338 SITE 2 AC7 7 PRO A 339 LYS A 342 HOH A 646 SITE 1 AC8 3 PRO A 153 TRP A 216 ASN A 217 SITE 1 AC9 5 GLY A 265 GLN A 287 HIS A 315 LYS A 317 SITE 2 AC9 5 HOH A 693 SITE 1 AD1 8 PRO B 187 TYR B 318 LYS B 337 GLU B 338 SITE 2 AD1 8 PRO B 339 LYS B 342 HOH B 664 HOH B 755 SITE 1 AD2 5 THR A 238 HOH A 603 HOH A 627 ALA B 68 SITE 2 AD2 5 ARG B 72 SITE 1 AD3 3 PRO B 153 TRP B 216 ASN B 217 SITE 1 AD4 4 TRP B 169 PRO B 192 HOH B 659 HOH B 685 CRYST1 87.163 87.163 294.404 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011473 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003397 0.00000