HEADER HYDROLASE 26-MAR-20 7BR4 TITLE STRUCTURE OF DELETION MUTANT OF ALPHA-GLUCURONIDASE (TM0752) FROM TITLE 2 THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 ATCC: 43589; SOURCE 7 GENE: TM_0752; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PMH2T7 KEYWDS HYDROLASE-OXIDOREDUCTASE, ALPHA-GLUCURONIDASE ACTIVITY, CARBOHYDRATE KEYWDS 2 METABOLISM, NAD-BINDING ROSSMANN-FOLD, LDH C-TERMINAL DOMAIN-LIKE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MANOJ,S.B.MOHAPATRA REVDAT 3 20-DEC-23 7BR4 1 JRNL REVDAT 2 29-NOV-23 7BR4 1 REMARK REVDAT 1 31-MAR-21 7BR4 0 JRNL AUTH S.B.MOHAPATRA,N.MANOJ JRNL TITL A CONSERVED PI-HELIX PLAYS A KEY ROLE IN THERMOADAPTATION OF JRNL TITL 2 CATALYSIS IN THE GLYCOSIDE HYDROLASE FAMILY 4. JRNL REF BIOCHIM BIOPHYS ACTA V.1869 40523 2021 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 32853774 JRNL DOI 10.1016/J.BBAPAP.2020.140523 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 36374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4600 - 4.5799 1.00 2811 155 0.1531 0.1836 REMARK 3 2 4.5799 - 3.6373 1.00 2765 152 0.1366 0.1729 REMARK 3 3 3.6373 - 3.1781 1.00 2743 161 0.1806 0.2310 REMARK 3 4 3.1781 - 2.8878 0.97 2669 145 0.1974 0.2385 REMARK 3 5 2.8878 - 2.6810 0.95 2619 123 0.2003 0.2523 REMARK 3 6 2.6810 - 2.5230 0.94 2564 151 0.2161 0.2626 REMARK 3 7 2.5230 - 2.3967 0.93 2568 119 0.2607 0.3112 REMARK 3 8 2.3967 - 2.2924 0.94 2566 132 0.2540 0.2997 REMARK 3 9 2.2924 - 2.2042 0.95 2608 147 0.2466 0.2884 REMARK 3 10 2.2042 - 2.1282 0.95 2627 142 0.2025 0.2104 REMARK 3 11 2.1282 - 2.0617 0.96 2644 124 0.2142 0.2596 REMARK 3 12 2.0617 - 2.0027 0.97 2695 132 0.2338 0.2472 REMARK 3 13 2.0027 - 1.9500 0.98 2682 130 0.2621 0.3412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3906 REMARK 3 ANGLE : 0.663 5317 REMARK 3 CHIRALITY : 0.045 569 REMARK 3 PLANARITY : 0.004 683 REMARK 3 DIHEDRAL : 11.107 2307 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0410 5.0802 2.5082 REMARK 3 T TENSOR REMARK 3 T11: 0.2588 T22: 0.2722 REMARK 3 T33: 0.1318 T12: -0.0003 REMARK 3 T13: 0.0120 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.7977 L22: 1.8300 REMARK 3 L33: 2.7098 L12: -0.2354 REMARK 3 L13: 0.8911 L23: 0.3785 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.2796 S13: -0.0033 REMARK 3 S21: -0.3425 S22: -0.0543 S23: 0.0972 REMARK 3 S31: -0.0315 S32: -0.1844 S33: 0.0294 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2203 -8.7086 21.6199 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.1684 REMARK 3 T33: 0.1444 T12: 0.0447 REMARK 3 T13: 0.0222 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.9574 L22: 2.3585 REMARK 3 L33: 1.4421 L12: 0.3874 REMARK 3 L13: 0.1988 L23: -1.3637 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.0129 S13: -0.0806 REMARK 3 S21: -0.1410 S22: -0.0143 S23: 0.0129 REMARK 3 S31: 0.0473 S32: 0.1496 S33: -0.0319 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6519 5.9517 26.7115 REMARK 3 T TENSOR REMARK 3 T11: 0.1629 T22: 0.1102 REMARK 3 T33: 0.1086 T12: 0.0196 REMARK 3 T13: -0.0352 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.4471 L22: 1.1916 REMARK 3 L33: 0.8621 L12: 0.0609 REMARK 3 L13: -0.7235 L23: -0.1376 REMARK 3 S TENSOR REMARK 3 S11: -0.1247 S12: 0.0443 S13: 0.0495 REMARK 3 S21: -0.1438 S22: 0.0949 S23: 0.1627 REMARK 3 S31: -0.0320 S32: -0.1154 S33: 0.0233 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9439 -10.6946 33.5558 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.1402 REMARK 3 T33: 0.1869 T12: -0.0352 REMARK 3 T13: 0.0108 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.6867 L22: 2.0038 REMARK 3 L33: 1.6258 L12: -0.2625 REMARK 3 L13: 0.1282 L23: 0.3474 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: 0.0223 S13: -0.1683 REMARK 3 S21: -0.0227 S22: -0.0181 S23: 0.2419 REMARK 3 S31: 0.1366 S32: -0.2160 S33: -0.0248 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5426 -14.1511 6.2016 REMARK 3 T TENSOR REMARK 3 T11: 0.4339 T22: 0.2898 REMARK 3 T33: 0.2456 T12: -0.0463 REMARK 3 T13: -0.0470 T23: -0.0995 REMARK 3 L TENSOR REMARK 3 L11: 0.7490 L22: 1.3625 REMARK 3 L33: 5.5064 L12: -0.3501 REMARK 3 L13: -0.1463 L23: -2.5005 REMARK 3 S TENSOR REMARK 3 S11: -0.3212 S12: 0.1449 S13: -0.0235 REMARK 3 S21: -0.3258 S22: 0.0857 S23: -0.0503 REMARK 3 S31: -0.1634 S32: -0.1373 S33: 0.2428 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4280 6.0511 9.8660 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.3018 REMARK 3 T33: 0.2213 T12: 0.0252 REMARK 3 T13: -0.0230 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.8532 L22: 2.0293 REMARK 3 L33: 3.2688 L12: -0.2414 REMARK 3 L13: -0.4213 L23: 0.8632 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: 0.3307 S13: -0.1625 REMARK 3 S21: -0.2870 S22: -0.0986 S23: 0.3210 REMARK 3 S31: 0.0023 S32: -0.4797 S33: 0.1279 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7522 8.4532 34.2031 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.1103 REMARK 3 T33: 0.1242 T12: 0.0155 REMARK 3 T13: 0.0018 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.7580 L22: 0.4166 REMARK 3 L33: 1.9677 L12: 0.4687 REMARK 3 L13: -0.6673 L23: 0.0099 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -0.0725 S13: 0.0255 REMARK 3 S21: 0.0036 S22: 0.0336 S23: 0.0626 REMARK 3 S31: -0.1787 S32: 0.0089 S33: -0.0466 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4621 -13.4826 31.3118 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1819 REMARK 3 T33: 0.1942 T12: 0.0674 REMARK 3 T13: 0.0138 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.7707 L22: 2.0357 REMARK 3 L33: 1.8848 L12: 0.4741 REMARK 3 L13: 0.6569 L23: -0.7071 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.0280 S13: -0.0809 REMARK 3 S21: -0.1125 S22: -0.0258 S23: -0.3066 REMARK 3 S31: 0.2115 S32: 0.0526 S33: 0.0481 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 - 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36415 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 43.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 1VJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 0.2 M TRILITHIUM REMARK 280 CITRATE, 0.1 M IMIDAZOLE PH 6.0, 2-PROPANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.67500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.67500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 56.82946 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 86.90851 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 895 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLU A 469 REMARK 465 LYS A 470 REMARK 465 LEU A 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLU A 30 OE1 OE2 REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 LYS A 234 NZ REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 258 CE NZ REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 338 CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 LYS A 442 CE NZ REMARK 470 ARG A 465 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 468 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 426 O HOH A 604 1.50 REMARK 500 HH TYR A 54 O PRO A 337 1.56 REMARK 500 O VAL A 11 H LEU A 15 1.58 REMARK 500 O HOH A 656 O HOH A 821 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 121 71.03 -156.48 REMARK 500 LEU A 130 -55.99 72.18 REMARK 500 ALA A 150 67.23 -154.63 REMARK 500 LYS A 340 118.59 -174.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 899 DISTANCE = 6.68 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAI A 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 181 SG REMARK 620 2 HIS A 210 NE2 98.0 REMARK 620 3 HOH A 649 O 114.5 99.8 REMARK 620 4 HOH A 868 O 141.2 95.6 98.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI A 502 DBREF 7BR4 A 1 471 UNP Q9WZL1 Q9WZL1_THEMA 1 471 SEQADV 7BR4 MET A -11 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 GLY A -10 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 SER A -9 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 ASP A -8 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 LYS A -7 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 ILE A -6 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 HIS A -5 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 HIS A -4 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 HIS A -3 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 HIS A -2 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 HIS A -1 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 HIS A 0 UNP Q9WZL1 EXPRESSION TAG SEQADV 7BR4 A UNP Q9WZL1 PHE 407 DELETION SEQRES 1 A 482 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 482 LYS ILE SER ILE ILE GLY ALA GLY SER VAL ARG PHE ALA SEQRES 3 A 482 LEU GLN LEU VAL GLY ASP ILE ALA GLN THR GLU GLU LEU SEQRES 4 A 482 SER ARG GLU ASP THR HIS ILE TYR MET MET ASP VAL HIS SEQRES 5 A 482 GLU ARG ARG LEU ASN ALA SER TYR ILE LEU ALA ARG LYS SEQRES 6 A 482 TYR VAL GLU GLU LEU ASN SER PRO VAL LYS ILE VAL LYS SEQRES 7 A 482 THR SER SER LEU ASP GLU ALA ILE ASP GLY ALA ASP PHE SEQRES 8 A 482 ILE ILE ASN THR ALA TYR PRO TYR ASP PRO ARG TYR HIS SEQRES 9 A 482 ASP SER GLY SER GLN ARG TRP ASP GLU VAL THR LYS VAL SEQRES 10 A 482 GLY GLU LYS HIS GLY TYR TYR ARG GLY ILE ASP SER GLN SEQRES 11 A 482 GLU LEU ASN MET VAL SER THR TYR THR TYR VAL LEU SER SEQRES 12 A 482 SER TYR PRO ASP MET LYS LEU ALA LEU GLU ILE ALA GLU SEQRES 13 A 482 LYS MET LYS LYS MET ALA PRO LYS ALA TYR LEU MET GLN SEQRES 14 A 482 THR ALA ASN PRO VAL PHE GLU ILE THR GLN ALA VAL ARG SEQRES 15 A 482 ARG TRP THR GLY ALA ASN ILE VAL GLY PHE CYS HIS GLY SEQRES 16 A 482 VAL ALA GLY VAL TYR GLU VAL PHE GLU LYS LEU ASP LEU SEQRES 17 A 482 ASP PRO GLU GLU VAL ASP TRP GLN VAL ALA GLY VAL ASN SEQRES 18 A 482 HIS GLY ILE TRP LEU ASN ARG PHE ARG TYR ARG GLY GLU SEQRES 19 A 482 ASP ALA TYR PRO LEU LEU ASP GLU TRP ILE GLU LYS LYS SEQRES 20 A 482 LEU PRO GLU TRP GLU PRO LYS ASN PRO TRP ASP THR GLN SEQRES 21 A 482 MET SER PRO ALA ALA MET ASP MET TYR LYS PHE TYR GLY SEQRES 22 A 482 MET LEU PRO ILE GLY ASP THR VAL ARG ASN GLY SER TRP SEQRES 23 A 482 LYS TYR HIS TYR ASN LEU GLU THR LYS LYS LYS TRP PHE SEQRES 24 A 482 GLY LYS PHE GLY GLY ILE ASP ASN GLU VAL GLU ARG PRO SEQRES 25 A 482 LYS PHE HIS GLU GLN LEU ARG ARG ALA ARG GLU ARG LEU SEQRES 26 A 482 ILE LYS LEU ALA GLU GLU VAL GLN GLN ASN PRO GLY MET SEQRES 27 A 482 LYS LEU THR GLU GLU HIS PRO GLU ILE PHE PRO LYS GLY SEQRES 28 A 482 LYS LEU SER GLY GLU GLN HIS ILE PRO PHE ILE ASN ALA SEQRES 29 A 482 ILE ALA ASN ASN LYS ARG VAL ARG LEU PHE LEU ASN VAL SEQRES 30 A 482 GLU ASN GLN GLY THR LEU LYS ASP PHE PRO ASP ASP VAL SEQRES 31 A 482 VAL MET GLU LEU PRO VAL TRP VAL ASP CYS CYS GLY ILE SEQRES 32 A 482 HIS ARG GLU LYS VAL GLU PRO ASP LEU THR HIS ARG ILE SEQRES 33 A 482 LYS ILE TYR LEU TRP PRO ARG ILE LEU ARG MET GLU TRP SEQRES 34 A 482 ASN LEU GLU ALA TYR ILE SER ARG ASP ARG LYS VAL LEU SEQRES 35 A 482 GLU GLU ILE LEU ILE ARG ASP PRO ARG THR LYS SER TYR SEQRES 36 A 482 GLU GLN ILE VAL GLN VAL LEU ASP GLU ILE PHE ASN LEU SEQRES 37 A 482 PRO PHE ASN GLU GLU LEU ARG ARG TYR TYR LYS GLU LYS SEQRES 38 A 482 LEU HET MN A 501 1 HET NAI A 502 56 HETNAM MN MANGANESE (II) ION HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 2 MN MN 2+ FORMUL 3 NAI C21 H29 N7 O14 P2 FORMUL 4 HOH *299(H2 O) HELIX 1 AA1 SER A 10 GLN A 23 1 14 HELIX 2 AA2 HIS A 40 LEU A 58 1 19 HELIX 3 AA3 SER A 69 ASP A 75 1 7 HELIX 4 AA4 GLY A 95 HIS A 109 1 15 HELIX 5 AA5 SER A 132 ALA A 150 1 19 HELIX 6 AA6 PRO A 161 GLY A 174 1 14 HELIX 7 AA7 HIS A 182 VAL A 184 5 3 HELIX 8 AA8 ALA A 185 LEU A 194 1 10 HELIX 9 AA9 ASP A 197 GLU A 199 5 3 HELIX 10 AB1 ALA A 224 LYS A 235 1 12 HELIX 11 AB2 LEU A 236 TRP A 239 5 4 HELIX 12 AB3 SER A 250 GLY A 261 1 12 HELIX 13 AB4 ILE A 265 GLY A 272 5 8 HELIX 14 AB5 SER A 273 HIS A 277 5 5 HELIX 15 AB6 ASN A 279 GLY A 288 1 10 HELIX 16 AB7 VAL A 297 ASN A 323 1 27 HELIX 17 AB8 LYS A 327 HIS A 332 1 6 HELIX 18 AB9 GLN A 345 ASN A 356 1 12 HELIX 19 AC1 THR A 401 SER A 425 1 24 HELIX 20 AC2 ASP A 427 ARG A 437 1 11 HELIX 21 AC3 SER A 443 ASN A 456 1 14 HELIX 22 AC4 LEU A 457 PHE A 459 5 3 HELIX 23 AC5 ASN A 460 TYR A 467 1 8 SHEET 1 AA1 9 LYS A 63 THR A 67 0 SHEET 2 AA1 9 THR A 32 MET A 37 1 N MET A 36 O VAL A 65 SHEET 3 AA1 9 MET A 1 ILE A 6 1 N MET A 1 O HIS A 33 SHEET 4 AA1 9 PHE A 79 ASN A 82 1 O ILE A 81 N SER A 4 SHEET 5 AA1 9 TYR A 154 GLN A 157 1 O MET A 156 N ILE A 80 SHEET 6 AA1 9 ILE A 177 PHE A 180 1 O VAL A 178 N LEU A 155 SHEET 7 AA1 9 VAL A 359 GLU A 366 -1 O ASN A 364 N GLY A 179 SHEET 8 AA1 9 VAL A 379 ASP A 387 -1 O MET A 380 N VAL A 365 SHEET 9 AA1 9 GLY A 390 ARG A 393 -1 O HIS A 392 N TRP A 385 SHEET 1 AA2 3 VAL A 201 VAL A 208 0 SHEET 2 AA2 3 GLY A 211 TYR A 219 -1 O GLY A 211 N VAL A 208 SHEET 3 AA2 3 GLU A 222 ASP A 223 -1 O GLU A 222 N TYR A 219 LINK SG CYS A 181 MN MN A 501 1555 1555 2.51 LINK NE2 HIS A 210 MN MN A 501 1555 1555 2.22 LINK MN MN A 501 O HOH A 649 1555 1555 2.17 LINK MN MN A 501 O HOH A 868 1555 1555 2.36 CISPEP 1 ASN A 160 PRO A 161 0 1.91 CISPEP 2 GLU A 397 PRO A 398 0 -1.90 SITE 1 AC1 4 CYS A 181 HIS A 210 HOH A 649 HOH A 868 SITE 1 AC2 25 GLY A 7 GLY A 9 SER A 10 MET A 37 SITE 2 AC2 25 ASP A 38 VAL A 39 HIS A 40 ARG A 43 SITE 3 AC2 25 THR A 83 ALA A 84 TYR A 85 PRO A 86 SITE 4 AC2 25 TYR A 87 LEU A 138 THR A 158 ALA A 159 SITE 5 AC2 25 ASN A 160 ARG A 310 HOH A 619 HOH A 626 SITE 6 AC2 25 HOH A 635 HOH A 713 HOH A 772 HOH A 788 SITE 7 AC2 25 HOH A 832 CRYST1 75.350 80.150 88.860 90.00 102.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013271 0.000000 0.002828 0.00000 SCALE2 0.000000 0.012477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011506 0.00000