HEADER MEMBRANE PROTEIN 29-MAR-20 7BRG TITLE ATRIAL NATRIURETIC PEPTIDE RECEPTOR COMPLEXED WITH RAT ATRIAL TITLE 2 NATRIURETIC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATRIAL NATRIURETIC PEPTIDE RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATRIAL NATRIURETIC PEPTIDE RECEPTOR TYPE A,NPR-A,GUANYLATE COMPND 5 CYCLASE A,GC-A; COMPND 6 EC: 4.6.1.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NATRIURETIC PEPTIDES A; COMPND 10 CHAIN: L; COMPND 11 SYNONYM: PREPRONATRIODILATIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: NPR1; SOURCE 6 EXPRESSION_SYSTEM: RATTUS NORVEGICUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10116; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: RAT; SOURCE 13 ORGANISM_TAXID: 10116 KEYWDS RECEPTOR-HORMONE COMPLEX, NATRIURETIC PEPTIDE, NATRIURETIC PEPTIDE KEYWDS 2 RECEPTOR, GUANYLYL-CYCLASE-COUPLED RECEPTOR, SIGNAL TRANSMISSION, KEYWDS 3 ROTATION MECHANISM, SIGNALING PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.OGAWA REVDAT 2 29-NOV-23 7BRG 1 REMARK REVDAT 1 31-MAR-21 7BRG 0 JRNL AUTH H.OGAWA JRNL TITL STRUCTURAL INSIGHT INTO HORMONE-RECOGNITION AND JRNL TITL 2 TRANSMEMBRANE SIGNALING BY THE ATRIAL NATRIURETIC PEPTIDE JRNL TITL 3 RECEPTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 52690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9160 - 5.4413 0.88 4287 112 0.1658 0.2068 REMARK 3 2 5.4413 - 4.3220 0.93 4463 122 0.1452 0.1889 REMARK 3 3 4.3220 - 3.7766 0.94 4543 132 0.1626 0.2125 REMARK 3 4 3.7766 - 3.4317 0.96 4591 157 0.1977 0.3006 REMARK 3 5 3.4317 - 3.1859 0.98 4701 142 0.2249 0.2499 REMARK 3 6 3.1859 - 2.9982 0.99 4812 114 0.2423 0.3082 REMARK 3 7 2.9982 - 2.8482 1.00 4796 117 0.2486 0.3266 REMARK 3 8 2.8482 - 2.7243 1.00 4755 152 0.2633 0.3699 REMARK 3 9 2.7243 - 2.6194 0.99 4762 153 0.2937 0.3524 REMARK 3 10 2.6194 - 2.5291 0.99 4771 158 0.2980 0.3849 REMARK 3 11 2.5291 - 2.4500 0.99 4690 160 0.3062 0.3137 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7516 REMARK 3 ANGLE : 0.785 10232 REMARK 3 CHIRALITY : 0.045 1134 REMARK 3 PLANARITY : 0.004 1320 REMARK 3 DIHEDRAL : 13.661 4448 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9645 12.8083 -8.2281 REMARK 3 T TENSOR REMARK 3 T11: 0.7641 T22: 0.4274 REMARK 3 T33: 0.7267 T12: -0.1074 REMARK 3 T13: 0.0241 T23: 0.3216 REMARK 3 L TENSOR REMARK 3 L11: 0.0566 L22: 0.2109 REMARK 3 L33: 0.1710 L12: -0.0022 REMARK 3 L13: -0.0269 L23: 0.1140 REMARK 3 S TENSOR REMARK 3 S11: -0.1778 S12: 0.0938 S13: -0.0588 REMARK 3 S21: 0.0042 S22: -0.2581 S23: -0.3490 REMARK 3 S31: -0.2782 S32: 0.1799 S33: -0.4170 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3376 8.9891 -15.4623 REMARK 3 T TENSOR REMARK 3 T11: 0.6545 T22: 0.4369 REMARK 3 T33: 0.4829 T12: 0.0340 REMARK 3 T13: 0.0415 T23: 0.1766 REMARK 3 L TENSOR REMARK 3 L11: 0.0789 L22: 0.1491 REMARK 3 L33: 0.0664 L12: 0.1286 REMARK 3 L13: -0.0268 L23: 0.0034 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: 0.2269 S13: 0.1731 REMARK 3 S21: -0.0402 S22: 0.1931 S23: 0.2833 REMARK 3 S31: -0.0383 S32: -0.0093 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5821 22.6440 -16.1692 REMARK 3 T TENSOR REMARK 3 T11: 0.9943 T22: 0.3703 REMARK 3 T33: 0.6628 T12: -0.1038 REMARK 3 T13: -0.0488 T23: 0.3700 REMARK 3 L TENSOR REMARK 3 L11: 0.1301 L22: 0.2708 REMARK 3 L33: 0.1708 L12: 0.1015 REMARK 3 L13: -0.0897 L23: -0.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.1337 S13: 0.3375 REMARK 3 S21: -0.0957 S22: 0.0749 S23: 0.1698 REMARK 3 S31: -0.7187 S32: 0.0276 S33: -0.0227 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7479 -11.4913 9.6120 REMARK 3 T TENSOR REMARK 3 T11: 0.7395 T22: 0.3489 REMARK 3 T33: 0.7967 T12: 0.2087 REMARK 3 T13: -0.0535 T23: 0.5089 REMARK 3 L TENSOR REMARK 3 L11: 0.1531 L22: 0.2243 REMARK 3 L33: 0.0960 L12: 0.0120 REMARK 3 L13: -0.0842 L23: -0.0761 REMARK 3 S TENSOR REMARK 3 S11: -0.1365 S12: -0.1536 S13: 0.0636 REMARK 3 S21: 0.0869 S22: -0.1887 S23: -0.5635 REMARK 3 S31: 0.0208 S32: 0.3618 S33: -0.1557 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8102 -10.5942 13.5125 REMARK 3 T TENSOR REMARK 3 T11: 0.7202 T22: 0.4116 REMARK 3 T33: 0.5578 T12: -0.0352 REMARK 3 T13: -0.0226 T23: 0.1572 REMARK 3 L TENSOR REMARK 3 L11: 0.1318 L22: 0.2555 REMARK 3 L33: 0.1531 L12: -0.2120 REMARK 3 L13: 0.1081 L23: -0.1151 REMARK 3 S TENSOR REMARK 3 S11: -0.1394 S12: -0.2591 S13: -0.2652 REMARK 3 S21: -0.0499 S22: 0.0845 S23: 0.1543 REMARK 3 S31: 0.2157 S32: 0.0433 S33: -0.0025 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5789 -22.6390 16.3543 REMARK 3 T TENSOR REMARK 3 T11: 1.0349 T22: 0.3666 REMARK 3 T33: 0.6257 T12: 0.0959 REMARK 3 T13: 0.0588 T23: 0.3537 REMARK 3 L TENSOR REMARK 3 L11: 0.0960 L22: 0.3835 REMARK 3 L33: 0.1552 L12: -0.1302 REMARK 3 L13: 0.1044 L23: -0.0527 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: -0.1170 S13: -0.2864 REMARK 3 S21: 0.1097 S22: 0.0301 S23: 0.1136 REMARK 3 S31: 0.7393 S32: -0.0242 S33: -0.0979 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 4 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3666 -0.0081 0.0999 REMARK 3 T TENSOR REMARK 3 T11: 1.1739 T22: 0.7016 REMARK 3 T33: 0.7296 T12: 0.0137 REMARK 3 T13: 0.0082 T23: 0.0879 REMARK 3 L TENSOR REMARK 3 L11: 0.0003 L22: 0.0052 REMARK 3 L33: 0.0054 L12: 0.0005 REMARK 3 L13: -0.0006 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: -0.0012 S13: -0.0064 REMARK 3 S21: 0.0013 S22: 0.0218 S23: 0.0126 REMARK 3 S31: 0.0037 S32: 0.0143 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 9 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7982 -0.0072 0.0918 REMARK 3 T TENSOR REMARK 3 T11: 1.0350 T22: 0.6318 REMARK 3 T33: 0.5268 T12: 0.0097 REMARK 3 T13: 0.0215 T23: 0.1670 REMARK 3 L TENSOR REMARK 3 L11: -0.0006 L22: 0.0068 REMARK 3 L33: 0.0027 L12: 0.0002 REMARK 3 L13: -0.0005 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0088 S13: -0.0012 REMARK 3 S21: 0.0019 S22: -0.0186 S23: -0.0019 REMARK 3 S31: 0.0043 S32: -0.0196 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 24 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5403 0.0047 0.0974 REMARK 3 T TENSOR REMARK 3 T11: 0.5185 T22: 0.5769 REMARK 3 T33: 0.3238 T12: -0.0067 REMARK 3 T13: -0.0029 T23: 0.1301 REMARK 3 L TENSOR REMARK 3 L11: 0.0014 L22: -0.0001 REMARK 3 L33: 0.0017 L12: 0.0005 REMARK 3 L13: -0.0001 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.0034 S13: -0.0076 REMARK 3 S21: -0.0051 S22: 0.0508 S23: -0.0247 REMARK 3 S31: 0.0052 S32: -0.0041 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 - 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 716.1 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 716.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52796 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 22.30 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 19.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.08 REMARK 200 STARTING MODEL: 1DP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, MES, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.30100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.60200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.95150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 218.25250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.65050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 427 REMARK 465 GLU A 428 REMARK 465 ASP A 429 REMARK 465 PRO A 430 REMARK 465 ALA A 431 REMARK 465 CYS A 432 REMARK 465 ASN A 433 REMARK 465 GLN A 434 REMARK 465 ASP A 435 REMARK 465 ASN B 427 REMARK 465 GLU B 428 REMARK 465 ASP B 429 REMARK 465 PRO B 430 REMARK 465 ALA B 431 REMARK 465 CYS B 432 REMARK 465 ASN B 433 REMARK 465 GLN B 434 REMARK 465 ASP B 435 REMARK 465 SER L 1 REMARK 465 LEU L 2 REMARK 465 ARG L 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 623 O HOH B 654 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 41 72.72 41.39 REMARK 500 HIS A 148 -66.07 -121.42 REMARK 500 ASP A 242 69.73 -108.11 REMARK 500 LYS A 422 -86.56 -59.68 REMARK 500 LEU B 41 74.88 39.63 REMARK 500 HIS B 148 -67.79 -122.39 REMARK 500 ASP B 242 70.09 -107.23 REMARK 500 LYS B 422 -88.98 -61.30 REMARK 500 ARG L 11 171.83 56.97 REMARK 500 ARG L 11 174.05 56.97 REMARK 500 SER L 19 -2.26 -152.69 REMARK 500 SER L 19 -6.09 -157.90 REMARK 500 LEU L 21 -20.06 87.44 REMARK 500 LEU L 21 -17.70 86.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DP4 RELATED DB: PDB REMARK 900 RELATED ID: 1T34 RELATED DB: PDB DBREF 7BRG A 1 435 UNP P18910 ANPRA_RAT 29 463 DBREF 7BRG B 1 435 UNP P18910 ANPRA_RAT 29 463 DBREF 7BRG L 1 28 UNP P01161 ANF_RAT 123 150 SEQRES 1 A 435 SER ASP LEU THR VAL ALA VAL VAL LEU PRO LEU THR ASN SEQRES 2 A 435 THR SER TYR PRO TRP SER TRP ALA ARG VAL GLY PRO ALA SEQRES 3 A 435 VAL GLU LEU ALA LEU ALA ARG VAL LYS ALA ARG PRO ASP SEQRES 4 A 435 LEU LEU PRO GLY TRP THR VAL ARG MET VAL LEU GLY SER SEQRES 5 A 435 SER GLU ASN ALA ALA GLY VAL CYS SER ASP THR ALA ALA SEQRES 6 A 435 PRO LEU ALA ALA VAL ASP LEU LYS TRP GLU HIS SER PRO SEQRES 7 A 435 ALA VAL PHE LEU GLY PRO GLY CYS VAL TYR SER ALA ALA SEQRES 8 A 435 PRO VAL GLY ARG PHE THR ALA HIS TRP ARG VAL PRO LEU SEQRES 9 A 435 LEU THR ALA GLY ALA PRO ALA LEU GLY ILE GLY VAL LYS SEQRES 10 A 435 ASP GLU TYR ALA LEU THR THR ARG THR GLY PRO SER HIS SEQRES 11 A 435 VAL LYS LEU GLY ASP PHE VAL THR ALA LEU HIS ARG ARG SEQRES 12 A 435 LEU GLY TRP GLU HIS GLN ALA LEU VAL LEU TYR ALA ASP SEQRES 13 A 435 ARG LEU GLY ASP ASP ARG PRO CYS PHE PHE ILE VAL GLU SEQRES 14 A 435 GLY LEU TYR MET ARG VAL ARG GLU ARG LEU ASN ILE THR SEQRES 15 A 435 VAL ASN HIS GLN GLU PHE VAL GLU GLY ASP PRO ASP HIS SEQRES 16 A 435 TYR PRO LYS LEU LEU ARG ALA VAL ARG ARG LYS GLY ARG SEQRES 17 A 435 VAL ILE TYR ILE CYS SER SER PRO ASP ALA PHE ARG ASN SEQRES 18 A 435 LEU MET LEU LEU ALA LEU ASN ALA GLY LEU THR GLY GLU SEQRES 19 A 435 ASP TYR VAL PHE PHE HIS LEU ASP VAL PHE GLY GLN SER SEQRES 20 A 435 LEU LYS SER ALA GLN GLY LEU VAL PRO GLN LYS PRO TRP SEQRES 21 A 435 GLU ARG GLY ASP GLY GLN ASP ARG SER ALA ARG GLN ALA SEQRES 22 A 435 PHE GLN ALA ALA LYS ILE ILE THR TYR LYS GLU PRO ASP SEQRES 23 A 435 ASN PRO GLU TYR LEU GLU PHE LEU LYS GLN LEU LYS LEU SEQRES 24 A 435 LEU ALA ASP LYS LYS PHE ASN PHE THR VAL GLU ASP GLY SEQRES 25 A 435 LEU LYS ASN ILE ILE PRO ALA SER PHE HIS ASP GLY LEU SEQRES 26 A 435 LEU LEU TYR VAL GLN ALA VAL THR GLU THR LEU ALA GLN SEQRES 27 A 435 GLY GLY THR VAL THR ASP GLY GLU ASN ILE THR GLN ARG SEQRES 28 A 435 MET TRP ASN ARG SER PHE GLN GLY VAL THR GLY TYR LEU SEQRES 29 A 435 LYS ILE ASP ARG ASN GLY ASP ARG ASP THR ASP PHE SER SEQRES 30 A 435 LEU TRP ASP MET ASP PRO GLU THR GLY ALA PHE ARG VAL SEQRES 31 A 435 VAL LEU ASN TYR ASN GLY THR SER GLN GLU LEU MET ALA SEQRES 32 A 435 VAL SER GLU HIS LYS LEU TYR TRP PRO LEU GLY TYR PRO SEQRES 33 A 435 PRO PRO ASP VAL PRO LYS CYS GLY PHE ASP ASN GLU ASP SEQRES 34 A 435 PRO ALA CYS ASN GLN ASP SEQRES 1 B 435 SER ASP LEU THR VAL ALA VAL VAL LEU PRO LEU THR ASN SEQRES 2 B 435 THR SER TYR PRO TRP SER TRP ALA ARG VAL GLY PRO ALA SEQRES 3 B 435 VAL GLU LEU ALA LEU ALA ARG VAL LYS ALA ARG PRO ASP SEQRES 4 B 435 LEU LEU PRO GLY TRP THR VAL ARG MET VAL LEU GLY SER SEQRES 5 B 435 SER GLU ASN ALA ALA GLY VAL CYS SER ASP THR ALA ALA SEQRES 6 B 435 PRO LEU ALA ALA VAL ASP LEU LYS TRP GLU HIS SER PRO SEQRES 7 B 435 ALA VAL PHE LEU GLY PRO GLY CYS VAL TYR SER ALA ALA SEQRES 8 B 435 PRO VAL GLY ARG PHE THR ALA HIS TRP ARG VAL PRO LEU SEQRES 9 B 435 LEU THR ALA GLY ALA PRO ALA LEU GLY ILE GLY VAL LYS SEQRES 10 B 435 ASP GLU TYR ALA LEU THR THR ARG THR GLY PRO SER HIS SEQRES 11 B 435 VAL LYS LEU GLY ASP PHE VAL THR ALA LEU HIS ARG ARG SEQRES 12 B 435 LEU GLY TRP GLU HIS GLN ALA LEU VAL LEU TYR ALA ASP SEQRES 13 B 435 ARG LEU GLY ASP ASP ARG PRO CYS PHE PHE ILE VAL GLU SEQRES 14 B 435 GLY LEU TYR MET ARG VAL ARG GLU ARG LEU ASN ILE THR SEQRES 15 B 435 VAL ASN HIS GLN GLU PHE VAL GLU GLY ASP PRO ASP HIS SEQRES 16 B 435 TYR PRO LYS LEU LEU ARG ALA VAL ARG ARG LYS GLY ARG SEQRES 17 B 435 VAL ILE TYR ILE CYS SER SER PRO ASP ALA PHE ARG ASN SEQRES 18 B 435 LEU MET LEU LEU ALA LEU ASN ALA GLY LEU THR GLY GLU SEQRES 19 B 435 ASP TYR VAL PHE PHE HIS LEU ASP VAL PHE GLY GLN SER SEQRES 20 B 435 LEU LYS SER ALA GLN GLY LEU VAL PRO GLN LYS PRO TRP SEQRES 21 B 435 GLU ARG GLY ASP GLY GLN ASP ARG SER ALA ARG GLN ALA SEQRES 22 B 435 PHE GLN ALA ALA LYS ILE ILE THR TYR LYS GLU PRO ASP SEQRES 23 B 435 ASN PRO GLU TYR LEU GLU PHE LEU LYS GLN LEU LYS LEU SEQRES 24 B 435 LEU ALA ASP LYS LYS PHE ASN PHE THR VAL GLU ASP GLY SEQRES 25 B 435 LEU LYS ASN ILE ILE PRO ALA SER PHE HIS ASP GLY LEU SEQRES 26 B 435 LEU LEU TYR VAL GLN ALA VAL THR GLU THR LEU ALA GLN SEQRES 27 B 435 GLY GLY THR VAL THR ASP GLY GLU ASN ILE THR GLN ARG SEQRES 28 B 435 MET TRP ASN ARG SER PHE GLN GLY VAL THR GLY TYR LEU SEQRES 29 B 435 LYS ILE ASP ARG ASN GLY ASP ARG ASP THR ASP PHE SER SEQRES 30 B 435 LEU TRP ASP MET ASP PRO GLU THR GLY ALA PHE ARG VAL SEQRES 31 B 435 VAL LEU ASN TYR ASN GLY THR SER GLN GLU LEU MET ALA SEQRES 32 B 435 VAL SER GLU HIS LYS LEU TYR TRP PRO LEU GLY TYR PRO SEQRES 33 B 435 PRO PRO ASP VAL PRO LYS CYS GLY PHE ASP ASN GLU ASP SEQRES 34 B 435 PRO ALA CYS ASN GLN ASP SEQRES 1 L 28 SER LEU ARG ARG SER SER CYS PHE GLY GLY ARG ILE ASP SEQRES 2 L 28 ARG ILE GLY ALA GLN SER GLY LEU GLY CYS ASN SER PHE SEQRES 3 L 28 ARG TYR HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET MAN D 4 11 HET NAG E 1 14 HET NAG E 2 14 HET MAN E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET MAN F 3 11 HET MAN F 4 11 HET CL A 508 1 HET CL B 508 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 8(C8 H15 N O6) FORMUL 4 MAN 6(C6 H12 O6) FORMUL 8 CL 2(CL 1-) FORMUL 10 HOH *148(H2 O) HELIX 1 AA1 SER A 19 ARG A 37 1 19 HELIX 2 AA2 THR A 63 SER A 77 1 15 HELIX 3 AA3 CYS A 86 ARG A 101 1 16 HELIX 4 AA4 LEU A 112 VAL A 116 5 5 HELIX 5 AA5 SER A 129 ARG A 143 1 15 HELIX 6 AA6 ARG A 162 LEU A 179 1 18 HELIX 7 AA7 ASP A 194 GLY A 207 1 14 HELIX 8 AA8 SER A 215 ALA A 229 1 15 HELIX 9 AA9 GLN A 266 PHE A 274 1 9 HELIX 10 AB1 ASN A 287 PHE A 305 1 19 HELIX 11 AB2 GLY A 312 LYS A 314 5 3 HELIX 12 AB3 ASN A 315 GLN A 338 1 24 HELIX 13 AB4 ASP A 344 TRP A 353 1 10 HELIX 14 AB5 SER B 19 ARG B 37 1 19 HELIX 15 AB6 THR B 63 SER B 77 1 15 HELIX 16 AB7 CYS B 86 ARG B 101 1 16 HELIX 17 AB8 ALA B 111 VAL B 116 5 6 HELIX 18 AB9 SER B 129 ARG B 143 1 15 HELIX 19 AC1 ARG B 162 LEU B 179 1 18 HELIX 20 AC2 ASP B 194 GLY B 207 1 14 HELIX 21 AC3 SER B 215 ALA B 229 1 15 HELIX 22 AC4 GLN B 266 PHE B 274 1 9 HELIX 23 AC5 ASN B 287 PHE B 305 1 19 HELIX 24 AC6 GLY B 312 LYS B 314 5 3 HELIX 25 AC7 ASN B 315 GLN B 338 1 24 HELIX 26 AC8 ASP B 344 TRP B 353 1 10 HELIX 27 AC9 ASP L 13 ALA L 17 5 5 SHEET 1 AA1 5 ARG A 47 SER A 52 0 SHEET 2 AA1 5 THR A 4 LEU A 9 1 N VAL A 7 O VAL A 49 SHEET 3 AA1 5 VAL A 80 LEU A 82 1 O LEU A 82 N ALA A 6 SHEET 4 AA1 5 LEU A 104 THR A 106 1 O LEU A 105 N PHE A 81 SHEET 5 AA1 5 THR A 123 ARG A 125 1 O THR A 124 N LEU A 104 SHEET 1 AA2 8 THR A 182 PHE A 188 0 SHEET 2 AA2 8 GLN A 149 ALA A 155 1 N VAL A 152 O ASN A 184 SHEET 3 AA2 8 VAL A 209 CYS A 213 1 O TYR A 211 N LEU A 153 SHEET 4 AA2 8 VAL A 237 LEU A 241 1 O PHE A 239 N ILE A 210 SHEET 5 AA2 8 ALA A 277 TYR A 282 1 O LYS A 278 N HIS A 240 SHEET 6 AA2 8 PHE A 376 MET A 381 -1 O TRP A 379 N ILE A 279 SHEET 7 AA2 8 PHE A 388 ASN A 395 -1 O TYR A 394 N PHE A 376 SHEET 8 AA2 8 GLU A 400 ALA A 403 -1 O MET A 402 N ASN A 393 SHEET 1 AA3 2 ARG A 355 GLY A 359 0 SHEET 2 AA3 2 GLY A 362 ILE A 366 -1 O GLY A 362 N GLY A 359 SHEET 1 AA4 5 ARG B 47 SER B 52 0 SHEET 2 AA4 5 THR B 4 LEU B 9 1 N VAL B 5 O ARG B 47 SHEET 3 AA4 5 VAL B 80 LEU B 82 1 O LEU B 82 N ALA B 6 SHEET 4 AA4 5 LEU B 104 THR B 106 1 O LEU B 105 N PHE B 81 SHEET 5 AA4 5 THR B 123 ARG B 125 1 O THR B 124 N LEU B 104 SHEET 1 AA5 8 THR B 182 PHE B 188 0 SHEET 2 AA5 8 GLN B 149 ALA B 155 1 N ALA B 150 O ASN B 184 SHEET 3 AA5 8 VAL B 209 CYS B 213 1 O TYR B 211 N LEU B 153 SHEET 4 AA5 8 VAL B 237 LEU B 241 1 O PHE B 239 N ILE B 210 SHEET 5 AA5 8 ALA B 277 TYR B 282 1 O LYS B 278 N HIS B 240 SHEET 6 AA5 8 PHE B 376 MET B 381 -1 O TRP B 379 N ILE B 279 SHEET 7 AA5 8 PHE B 388 ASN B 395 -1 O TYR B 394 N PHE B 376 SHEET 8 AA5 8 GLU B 400 ALA B 403 -1 O MET B 402 N ASN B 393 SHEET 1 AA6 2 ARG B 355 GLY B 359 0 SHEET 2 AA6 2 GLY B 362 ILE B 366 -1 O GLY B 362 N GLY B 359 SSBOND 1 CYS A 60 CYS A 86 1555 1555 2.06 SSBOND 2 CYS A 164 CYS A 213 1555 1555 2.08 SSBOND 3 CYS B 60 CYS B 86 1555 1555 2.05 SSBOND 4 CYS B 164 CYS B 213 1555 1555 2.07 SSBOND 5 CYS L 7 CYS L 23 1555 1555 2.04 LINK ND2 ASN A 13 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 395 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN B 13 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 395 C1 NAG F 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.38 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.38 LINK O3 MAN D 3 C1 MAN D 4 1555 1555 1.38 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.38 LINK O4 NAG E 2 C1 MAN E 3 1555 1555 1.38 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.38 LINK O4 NAG F 2 C1 MAN F 3 1555 1555 1.38 LINK O3 MAN F 3 C1 MAN F 4 1555 1555 1.38 CISPEP 1 GLY A 83 PRO A 84 0 0.50 CISPEP 2 VAL A 255 PRO A 256 0 0.29 CISPEP 3 GLY B 83 PRO B 84 0 -2.93 CISPEP 4 VAL B 255 PRO B 256 0 0.65 CRYST1 100.234 100.234 261.903 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009977 0.005760 0.000000 0.00000 SCALE2 0.000000 0.011520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003818 0.00000