HEADER MEMBRANE PROTEIN 29-MAR-20 7BRH TITLE ATRIAL NATRIURETIC PEPTIDE RECEPTOR COMPLEXED WITH HUMAN ATRIAL TITLE 2 NATRIURETIC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATRIAL NATRIURETIC PEPTIDE RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATRIAL NATRIURETIC PEPTIDE RECEPTOR TYPE A,NPR-A,GUANYLATE COMPND 5 CYCLASE A,GC-A; COMPND 6 EC: 4.6.1.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NATRIURETIC PEPTIDES A; COMPND 10 CHAIN: L; COMPND 11 SYNONYM: CDD-ANF,CARDIODILATIN,CDD,CARDIODILATIN-RELATED PEPTIDE,CDP, COMPND 12 PREPRONATRIODILATIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: NPR1; SOURCE 6 EXPRESSION_SYSTEM: RATTUS NORVEGICUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10116; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS RECEPTOR-HORMONE COMPLEX, NATRIURETIC PEPTIDE, NATRIURETIC PEPTIDE KEYWDS 2 RECEPTOR, GUANYLYL-CYCLASE-COUPLED RECEPTOR, SIGNAL TRANSMISSION, KEYWDS 3 ROTATION MECHANISM, SIGNALING PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.OGAWA REVDAT 2 29-NOV-23 7BRH 1 REMARK REVDAT 1 31-MAR-21 7BRH 0 JRNL AUTH H.OGAWA JRNL TITL STRUCTURAL INSIGHT INTO HORMONE-RECOGNITION AND JRNL TITL 2 TRANSMEMBRANE SIGNALING BY THE ATRIAL NATRIURETIC PEPTIDE JRNL TITL 3 RECEPTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 52725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4449 - 5.4456 0.90 4376 110 0.1572 0.1855 REMARK 3 2 5.4456 - 4.3236 0.93 4459 123 0.1481 0.1673 REMARK 3 3 4.3236 - 3.7774 0.94 4542 142 0.1708 0.2050 REMARK 3 4 3.7774 - 3.4322 0.96 4595 155 0.2097 0.3132 REMARK 3 5 3.4322 - 3.1863 0.98 4697 147 0.2376 0.2556 REMARK 3 6 3.1863 - 2.9985 1.00 4825 114 0.2482 0.3019 REMARK 3 7 2.9985 - 2.8483 1.00 4804 117 0.2562 0.3331 REMARK 3 8 2.8483 - 2.7244 1.00 4771 151 0.2584 0.3489 REMARK 3 9 2.7244 - 2.6195 0.99 4727 148 0.2868 0.2907 REMARK 3 10 2.6195 - 2.5291 0.99 4735 156 0.2965 0.3531 REMARK 3 11 2.5291 - 2.4501 0.98 4668 163 0.3035 0.3200 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7516 REMARK 3 ANGLE : 0.783 10230 REMARK 3 CHIRALITY : 0.047 1132 REMARK 3 PLANARITY : 0.005 1320 REMARK 3 DIHEDRAL : 13.160 4450 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1285 12.0005 -12.7103 REMARK 3 T TENSOR REMARK 3 T11: 0.7222 T22: 0.4554 REMARK 3 T33: 0.8643 T12: -0.1308 REMARK 3 T13: 0.1832 T23: 0.4985 REMARK 3 L TENSOR REMARK 3 L11: 0.0533 L22: 0.0256 REMARK 3 L33: 0.0099 L12: -0.0367 REMARK 3 L13: -0.0081 L23: 0.0034 REMARK 3 S TENSOR REMARK 3 S11: -0.1168 S12: 0.0429 S13: -0.0702 REMARK 3 S21: -0.0582 S22: -0.0900 S23: -0.2502 REMARK 3 S31: 0.0009 S32: 0.2539 S33: -0.1086 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0672 12.7182 -4.4502 REMARK 3 T TENSOR REMARK 3 T11: 0.7765 T22: 0.1769 REMARK 3 T33: 0.5033 T12: -0.0171 REMARK 3 T13: -0.0047 T23: 0.2734 REMARK 3 L TENSOR REMARK 3 L11: 0.0197 L22: 0.0610 REMARK 3 L33: 0.1949 L12: 0.0017 REMARK 3 L13: -0.0438 L23: 0.0590 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.0196 S13: 0.0801 REMARK 3 S21: 0.2761 S22: -0.1569 S23: -0.2272 REMARK 3 S31: -0.3640 S32: 0.1648 S33: -0.2323 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6178 8.1441 -19.1784 REMARK 3 T TENSOR REMARK 3 T11: 0.7211 T22: 0.4761 REMARK 3 T33: 0.4481 T12: -0.0041 REMARK 3 T13: -0.0015 T23: 0.1821 REMARK 3 L TENSOR REMARK 3 L11: 0.0187 L22: 0.0538 REMARK 3 L33: 0.0096 L12: 0.0415 REMARK 3 L13: -0.0046 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: -0.2299 S12: 0.1283 S13: 0.2650 REMARK 3 S21: -0.2293 S22: 0.1563 S23: 0.3295 REMARK 3 S31: -0.0634 S32: -0.1028 S33: -0.0023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5511 22.6541 -16.1312 REMARK 3 T TENSOR REMARK 3 T11: 1.0111 T22: 0.3192 REMARK 3 T33: 0.6132 T12: -0.0652 REMARK 3 T13: -0.0040 T23: 0.3791 REMARK 3 L TENSOR REMARK 3 L11: 0.1108 L22: 0.3814 REMARK 3 L33: 0.1107 L12: 0.1595 REMARK 3 L13: -0.1008 L23: -0.0905 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: 0.1610 S13: 0.3498 REMARK 3 S21: -0.0778 S22: 0.0312 S23: 0.0293 REMARK 3 S31: -0.6591 S32: 0.0237 S33: -0.1315 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9111 -12.8066 8.4037 REMARK 3 T TENSOR REMARK 3 T11: 0.7343 T22: 0.3411 REMARK 3 T33: 0.7849 T12: 0.1672 REMARK 3 T13: -0.0126 T23: 0.4911 REMARK 3 L TENSOR REMARK 3 L11: 0.1351 L22: 0.2174 REMARK 3 L33: 0.1732 L12: 0.0178 REMARK 3 L13: -0.0702 L23: -0.1048 REMARK 3 S TENSOR REMARK 3 S11: -0.1461 S12: -0.0668 S13: 0.0337 REMARK 3 S21: 0.0104 S22: -0.1936 S23: -0.5469 REMARK 3 S31: 0.2122 S32: 0.3962 S33: -0.4680 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3171 -9.0205 15.6314 REMARK 3 T TENSOR REMARK 3 T11: 0.6457 T22: 0.3725 REMARK 3 T33: 0.4548 T12: -0.0311 REMARK 3 T13: -0.0103 T23: 0.2101 REMARK 3 L TENSOR REMARK 3 L11: 0.1020 L22: 0.1213 REMARK 3 L33: 0.0445 L12: -0.1222 REMARK 3 L13: 0.0125 L23: 0.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.1193 S12: -0.2054 S13: -0.1869 REMARK 3 S21: 0.0867 S22: 0.1961 S23: 0.3203 REMARK 3 S31: 0.1121 S32: -0.0521 S33: 0.0053 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5471 -22.6518 16.3430 REMARK 3 T TENSOR REMARK 3 T11: 1.0336 T22: 0.3460 REMARK 3 T33: 0.6118 T12: 0.0981 REMARK 3 T13: 0.0325 T23: 0.4132 REMARK 3 L TENSOR REMARK 3 L11: 0.1161 L22: 0.2953 REMARK 3 L33: 0.0880 L12: -0.1158 REMARK 3 L13: 0.0698 L23: -0.0349 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: -0.2002 S13: -0.3188 REMARK 3 S21: 0.0898 S22: 0.0129 S23: 0.0561 REMARK 3 S31: 0.6486 S32: -0.0287 S33: -0.0451 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 4 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1270 -0.0188 0.0999 REMARK 3 T TENSOR REMARK 3 T11: 1.0367 T22: 0.4086 REMARK 3 T33: 0.3997 T12: -0.0034 REMARK 3 T13: 0.0077 T23: 0.1578 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: 0.0110 REMARK 3 L33: 0.0072 L12: -0.0005 REMARK 3 L13: 0.0002 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: 0.0017 S13: 0.0005 REMARK 3 S21: -0.0018 S22: 0.0051 S23: -0.0196 REMARK 3 S31: -0.0068 S32: 0.0048 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 17 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8597 -0.0003 0.0993 REMARK 3 T TENSOR REMARK 3 T11: 0.5881 T22: 0.4636 REMARK 3 T33: 0.2738 T12: 0.0228 REMARK 3 T13: 0.0119 T23: 0.2196 REMARK 3 L TENSOR REMARK 3 L11: 0.0055 L22: -0.0015 REMARK 3 L33: 0.0041 L12: -0.0006 REMARK 3 L13: -0.0051 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.0070 S13: -0.0007 REMARK 3 S21: -0.0112 S22: 0.0136 S23: 0.0046 REMARK 3 S31: 0.0171 S32: -0.0170 S33: 0.0348 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 - 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 716.1 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 716.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52731 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 27.80 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.08 REMARK 200 STARTING MODEL: 1DP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, MES, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.24033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.48067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.86050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 218.10083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.62017 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 427 REMARK 465 GLU A 428 REMARK 465 ASP A 429 REMARK 465 PRO A 430 REMARK 465 ALA A 431 REMARK 465 CYS A 432 REMARK 465 ASN A 433 REMARK 465 GLN A 434 REMARK 465 ASP A 435 REMARK 465 ASN B 427 REMARK 465 GLU B 428 REMARK 465 ASP B 429 REMARK 465 PRO B 430 REMARK 465 ALA B 431 REMARK 465 CYS B 432 REMARK 465 ASN B 433 REMARK 465 GLN B 434 REMARK 465 ASP B 435 REMARK 465 SER L 1 REMARK 465 LEU L 2 REMARK 465 ARG L 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 21 -4.58 -55.79 REMARK 500 ARG A 22 -33.78 -132.39 REMARK 500 LEU A 41 71.46 41.14 REMARK 500 ASP A 62 1.82 -67.71 REMARK 500 HIS A 148 -63.33 -127.56 REMARK 500 ARG A 204 36.96 -97.49 REMARK 500 ARG A 205 -23.86 -155.30 REMARK 500 ASP A 242 72.60 -111.45 REMARK 500 ARG A 262 -20.01 -143.65 REMARK 500 LYS A 303 -72.97 -84.81 REMARK 500 LYS A 422 -84.42 -53.78 REMARK 500 CYS A 423 63.03 -106.53 REMARK 500 LEU B 41 73.58 41.42 REMARK 500 HIS B 148 -65.15 -128.57 REMARK 500 ARG B 204 37.48 -99.69 REMARK 500 ARG B 205 -22.25 -156.01 REMARK 500 ASP B 235 -30.68 -130.12 REMARK 500 ASP B 242 70.32 -114.12 REMARK 500 LYS B 303 -72.63 -84.02 REMARK 500 LYS B 422 -85.09 -52.29 REMARK 500 CYS B 423 63.24 -105.57 REMARK 500 ARG L 11 177.48 58.83 REMARK 500 ARG L 11 179.46 58.37 REMARK 500 SER L 19 -3.01 -155.35 REMARK 500 SER L 19 -5.48 -157.85 REMARK 500 LEU L 21 -23.86 87.91 REMARK 500 LEU L 21 -23.42 88.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DP4 RELATED DB: PDB REMARK 900 RELATED ID: 1T34 RELATED DB: PDB DBREF 7BRH A 1 435 UNP P18910 ANPRA_RAT 29 463 DBREF 7BRH B 1 435 UNP P18910 ANPRA_RAT 29 463 DBREF 7BRH L 1 28 UNP P01160 ANF_HUMAN 124 151 SEQRES 1 A 435 SER ASP LEU THR VAL ALA VAL VAL LEU PRO LEU THR ASN SEQRES 2 A 435 THR SER TYR PRO TRP SER TRP ALA ARG VAL GLY PRO ALA SEQRES 3 A 435 VAL GLU LEU ALA LEU ALA ARG VAL LYS ALA ARG PRO ASP SEQRES 4 A 435 LEU LEU PRO GLY TRP THR VAL ARG MET VAL LEU GLY SER SEQRES 5 A 435 SER GLU ASN ALA ALA GLY VAL CYS SER ASP THR ALA ALA SEQRES 6 A 435 PRO LEU ALA ALA VAL ASP LEU LYS TRP GLU HIS SER PRO SEQRES 7 A 435 ALA VAL PHE LEU GLY PRO GLY CYS VAL TYR SER ALA ALA SEQRES 8 A 435 PRO VAL GLY ARG PHE THR ALA HIS TRP ARG VAL PRO LEU SEQRES 9 A 435 LEU THR ALA GLY ALA PRO ALA LEU GLY ILE GLY VAL LYS SEQRES 10 A 435 ASP GLU TYR ALA LEU THR THR ARG THR GLY PRO SER HIS SEQRES 11 A 435 VAL LYS LEU GLY ASP PHE VAL THR ALA LEU HIS ARG ARG SEQRES 12 A 435 LEU GLY TRP GLU HIS GLN ALA LEU VAL LEU TYR ALA ASP SEQRES 13 A 435 ARG LEU GLY ASP ASP ARG PRO CYS PHE PHE ILE VAL GLU SEQRES 14 A 435 GLY LEU TYR MET ARG VAL ARG GLU ARG LEU ASN ILE THR SEQRES 15 A 435 VAL ASN HIS GLN GLU PHE VAL GLU GLY ASP PRO ASP HIS SEQRES 16 A 435 TYR PRO LYS LEU LEU ARG ALA VAL ARG ARG LYS GLY ARG SEQRES 17 A 435 VAL ILE TYR ILE CYS SER SER PRO ASP ALA PHE ARG ASN SEQRES 18 A 435 LEU MET LEU LEU ALA LEU ASN ALA GLY LEU THR GLY GLU SEQRES 19 A 435 ASP TYR VAL PHE PHE HIS LEU ASP VAL PHE GLY GLN SER SEQRES 20 A 435 LEU LYS SER ALA GLN GLY LEU VAL PRO GLN LYS PRO TRP SEQRES 21 A 435 GLU ARG GLY ASP GLY GLN ASP ARG SER ALA ARG GLN ALA SEQRES 22 A 435 PHE GLN ALA ALA LYS ILE ILE THR TYR LYS GLU PRO ASP SEQRES 23 A 435 ASN PRO GLU TYR LEU GLU PHE LEU LYS GLN LEU LYS LEU SEQRES 24 A 435 LEU ALA ASP LYS LYS PHE ASN PHE THR VAL GLU ASP GLY SEQRES 25 A 435 LEU LYS ASN ILE ILE PRO ALA SER PHE HIS ASP GLY LEU SEQRES 26 A 435 LEU LEU TYR VAL GLN ALA VAL THR GLU THR LEU ALA GLN SEQRES 27 A 435 GLY GLY THR VAL THR ASP GLY GLU ASN ILE THR GLN ARG SEQRES 28 A 435 MET TRP ASN ARG SER PHE GLN GLY VAL THR GLY TYR LEU SEQRES 29 A 435 LYS ILE ASP ARG ASN GLY ASP ARG ASP THR ASP PHE SER SEQRES 30 A 435 LEU TRP ASP MET ASP PRO GLU THR GLY ALA PHE ARG VAL SEQRES 31 A 435 VAL LEU ASN TYR ASN GLY THR SER GLN GLU LEU MET ALA SEQRES 32 A 435 VAL SER GLU HIS LYS LEU TYR TRP PRO LEU GLY TYR PRO SEQRES 33 A 435 PRO PRO ASP VAL PRO LYS CYS GLY PHE ASP ASN GLU ASP SEQRES 34 A 435 PRO ALA CYS ASN GLN ASP SEQRES 1 B 435 SER ASP LEU THR VAL ALA VAL VAL LEU PRO LEU THR ASN SEQRES 2 B 435 THR SER TYR PRO TRP SER TRP ALA ARG VAL GLY PRO ALA SEQRES 3 B 435 VAL GLU LEU ALA LEU ALA ARG VAL LYS ALA ARG PRO ASP SEQRES 4 B 435 LEU LEU PRO GLY TRP THR VAL ARG MET VAL LEU GLY SER SEQRES 5 B 435 SER GLU ASN ALA ALA GLY VAL CYS SER ASP THR ALA ALA SEQRES 6 B 435 PRO LEU ALA ALA VAL ASP LEU LYS TRP GLU HIS SER PRO SEQRES 7 B 435 ALA VAL PHE LEU GLY PRO GLY CYS VAL TYR SER ALA ALA SEQRES 8 B 435 PRO VAL GLY ARG PHE THR ALA HIS TRP ARG VAL PRO LEU SEQRES 9 B 435 LEU THR ALA GLY ALA PRO ALA LEU GLY ILE GLY VAL LYS SEQRES 10 B 435 ASP GLU TYR ALA LEU THR THR ARG THR GLY PRO SER HIS SEQRES 11 B 435 VAL LYS LEU GLY ASP PHE VAL THR ALA LEU HIS ARG ARG SEQRES 12 B 435 LEU GLY TRP GLU HIS GLN ALA LEU VAL LEU TYR ALA ASP SEQRES 13 B 435 ARG LEU GLY ASP ASP ARG PRO CYS PHE PHE ILE VAL GLU SEQRES 14 B 435 GLY LEU TYR MET ARG VAL ARG GLU ARG LEU ASN ILE THR SEQRES 15 B 435 VAL ASN HIS GLN GLU PHE VAL GLU GLY ASP PRO ASP HIS SEQRES 16 B 435 TYR PRO LYS LEU LEU ARG ALA VAL ARG ARG LYS GLY ARG SEQRES 17 B 435 VAL ILE TYR ILE CYS SER SER PRO ASP ALA PHE ARG ASN SEQRES 18 B 435 LEU MET LEU LEU ALA LEU ASN ALA GLY LEU THR GLY GLU SEQRES 19 B 435 ASP TYR VAL PHE PHE HIS LEU ASP VAL PHE GLY GLN SER SEQRES 20 B 435 LEU LYS SER ALA GLN GLY LEU VAL PRO GLN LYS PRO TRP SEQRES 21 B 435 GLU ARG GLY ASP GLY GLN ASP ARG SER ALA ARG GLN ALA SEQRES 22 B 435 PHE GLN ALA ALA LYS ILE ILE THR TYR LYS GLU PRO ASP SEQRES 23 B 435 ASN PRO GLU TYR LEU GLU PHE LEU LYS GLN LEU LYS LEU SEQRES 24 B 435 LEU ALA ASP LYS LYS PHE ASN PHE THR VAL GLU ASP GLY SEQRES 25 B 435 LEU LYS ASN ILE ILE PRO ALA SER PHE HIS ASP GLY LEU SEQRES 26 B 435 LEU LEU TYR VAL GLN ALA VAL THR GLU THR LEU ALA GLN SEQRES 27 B 435 GLY GLY THR VAL THR ASP GLY GLU ASN ILE THR GLN ARG SEQRES 28 B 435 MET TRP ASN ARG SER PHE GLN GLY VAL THR GLY TYR LEU SEQRES 29 B 435 LYS ILE ASP ARG ASN GLY ASP ARG ASP THR ASP PHE SER SEQRES 30 B 435 LEU TRP ASP MET ASP PRO GLU THR GLY ALA PHE ARG VAL SEQRES 31 B 435 VAL LEU ASN TYR ASN GLY THR SER GLN GLU LEU MET ALA SEQRES 32 B 435 VAL SER GLU HIS LYS LEU TYR TRP PRO LEU GLY TYR PRO SEQRES 33 B 435 PRO PRO ASP VAL PRO LYS CYS GLY PHE ASP ASN GLU ASP SEQRES 34 B 435 PRO ALA CYS ASN GLN ASP SEQRES 1 L 28 SER LEU ARG ARG SER SER CYS PHE GLY GLY ARG MET ASP SEQRES 2 L 28 ARG ILE GLY ALA GLN SER GLY LEU GLY CYS ASN SER PHE SEQRES 3 L 28 ARG TYR HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET MAN D 4 11 HET NAG E 1 14 HET NAG E 2 14 HET MAN E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET MAN F 3 11 HET MAN F 4 11 HET CL A 508 1 HET CL B 508 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 8(C8 H15 N O6) FORMUL 4 MAN 6(C6 H12 O6) FORMUL 8 CL 2(CL 1-) FORMUL 10 HOH *146(H2 O) HELIX 1 AA1 SER A 19 ALA A 36 1 18 HELIX 2 AA2 THR A 63 SER A 77 1 15 HELIX 3 AA3 CYS A 86 ARG A 101 1 16 HELIX 4 AA4 ALA A 111 VAL A 116 5 6 HELIX 5 AA5 SER A 129 ARG A 143 1 15 HELIX 6 AA6 ARG A 162 LEU A 179 1 18 HELIX 7 AA7 ASP A 194 GLY A 207 1 14 HELIX 8 AA8 SER A 215 ALA A 229 1 15 HELIX 9 AA9 GLN A 266 PHE A 274 1 9 HELIX 10 AB1 ASN A 287 PHE A 305 1 19 HELIX 11 AB2 GLY A 312 LYS A 314 5 3 HELIX 12 AB3 ASN A 315 ALA A 337 1 23 HELIX 13 AB4 ASP A 344 TRP A 353 1 10 HELIX 14 AB5 SER B 19 ALA B 36 1 18 HELIX 15 AB6 THR B 63 SER B 77 1 15 HELIX 16 AB7 CYS B 86 ARG B 101 1 16 HELIX 17 AB8 ALA B 111 VAL B 116 5 6 HELIX 18 AB9 SER B 129 ARG B 143 1 15 HELIX 19 AC1 ARG B 162 LEU B 179 1 18 HELIX 20 AC2 ASP B 194 GLY B 207 1 14 HELIX 21 AC3 SER B 215 ALA B 229 1 15 HELIX 22 AC4 GLN B 266 PHE B 274 1 9 HELIX 23 AC5 ASN B 287 PHE B 305 1 19 HELIX 24 AC6 GLY B 312 LYS B 314 5 3 HELIX 25 AC7 ASN B 315 ALA B 337 1 23 HELIX 26 AC8 ASP B 344 TRP B 353 1 10 HELIX 27 AC9 ASP L 13 GLN L 18 5 6 SHEET 1 AA1 5 ARG A 47 SER A 52 0 SHEET 2 AA1 5 THR A 4 LEU A 9 1 N VAL A 7 O VAL A 49 SHEET 3 AA1 5 VAL A 80 LEU A 82 1 O VAL A 80 N ALA A 6 SHEET 4 AA1 5 LEU A 104 THR A 106 1 O LEU A 105 N PHE A 81 SHEET 5 AA1 5 THR A 123 ARG A 125 1 O THR A 124 N LEU A 104 SHEET 1 AA2 8 THR A 182 PHE A 188 0 SHEET 2 AA2 8 GLN A 149 ALA A 155 1 N ALA A 150 O ASN A 184 SHEET 3 AA2 8 VAL A 209 CYS A 213 1 O TYR A 211 N LEU A 153 SHEET 4 AA2 8 VAL A 237 LEU A 241 1 O PHE A 239 N ILE A 212 SHEET 5 AA2 8 ALA A 277 TYR A 282 1 O LYS A 278 N HIS A 240 SHEET 6 AA2 8 PHE A 376 MET A 381 -1 O TRP A 379 N ILE A 279 SHEET 7 AA2 8 PHE A 388 ASN A 395 -1 O ARG A 389 N ASP A 380 SHEET 8 AA2 8 GLU A 400 ALA A 403 -1 O MET A 402 N ASN A 393 SHEET 1 AA3 2 ARG A 355 GLY A 359 0 SHEET 2 AA3 2 GLY A 362 ILE A 366 -1 O GLY A 362 N GLY A 359 SHEET 1 AA4 5 ARG B 47 SER B 52 0 SHEET 2 AA4 5 THR B 4 LEU B 9 1 N VAL B 5 O ARG B 47 SHEET 3 AA4 5 VAL B 80 LEU B 82 1 O LEU B 82 N ALA B 6 SHEET 4 AA4 5 LEU B 104 THR B 106 1 O LEU B 105 N PHE B 81 SHEET 5 AA4 5 THR B 123 ARG B 125 1 O THR B 124 N LEU B 104 SHEET 1 AA5 8 THR B 182 PHE B 188 0 SHEET 2 AA5 8 GLN B 149 ALA B 155 1 N ALA B 150 O ASN B 184 SHEET 3 AA5 8 VAL B 209 CYS B 213 1 O TYR B 211 N LEU B 153 SHEET 4 AA5 8 VAL B 237 LEU B 241 1 O PHE B 239 N ILE B 210 SHEET 5 AA5 8 ALA B 277 TYR B 282 1 O LYS B 278 N HIS B 240 SHEET 6 AA5 8 PHE B 376 MET B 381 -1 O TRP B 379 N ILE B 279 SHEET 7 AA5 8 PHE B 388 ASN B 395 -1 O ARG B 389 N ASP B 380 SHEET 8 AA5 8 GLU B 400 ALA B 403 -1 O MET B 402 N ASN B 393 SHEET 1 AA6 2 ARG B 355 GLY B 359 0 SHEET 2 AA6 2 GLY B 362 ILE B 366 -1 O GLY B 362 N GLY B 359 SSBOND 1 CYS A 60 CYS A 86 1555 1555 2.06 SSBOND 2 CYS A 164 CYS A 213 1555 1555 2.07 SSBOND 3 CYS B 60 CYS B 86 1555 1555 2.06 SSBOND 4 CYS B 164 CYS B 213 1555 1555 2.07 SSBOND 5 CYS L 7 CYS L 23 1555 1555 2.04 LINK ND2 ASN A 13 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 395 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN B 13 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 395 C1 NAG F 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.37 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.38 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.38 LINK O3 MAN D 3 C1 MAN D 4 1555 1555 1.37 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.37 LINK O4 NAG E 2 C1 MAN E 3 1555 1555 1.38 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.38 LINK O4 NAG F 2 C1 MAN F 3 1555 1555 1.38 LINK O3 MAN F 3 C1 MAN F 4 1555 1555 1.37 CISPEP 1 GLY A 83 PRO A 84 0 -0.81 CISPEP 2 VAL A 255 PRO A 256 0 0.49 CISPEP 3 GLY B 83 PRO B 84 0 -2.44 CISPEP 4 VAL B 255 PRO B 256 0 0.54 CRYST1 100.209 100.209 261.721 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009979 0.005761 0.000000 0.00000 SCALE2 0.000000 0.011523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003821 0.00000