HEADER MEMBRANE PROTEIN 29-MAR-20 7BRL TITLE ATRIAL NATRIURETIC PEPTIDE RECEPTOR COMPLEXED WITH DELETION MUTANT OF TITLE 2 RAT ATRIAL NATRIURETIC PEPTIDE[4-17,23] COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATRIAL NATRIURETIC PEPTIDE RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATRIAL NATRIURETIC PEPTIDE RECEPTOR TYPE A,NPR-A,GUANYLATE COMPND 5 CYCLASE A,GC-A; COMPND 6 EC: 4.6.1.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NATRIURETIC PEPTIDES A; COMPND 10 CHAIN: L; COMPND 11 SYNONYM: ATRIAL NATRIURETIC FACTOR PROHORMONE,PROANF,ATRIAL COMPND 12 NATRIURETIC PEPTIDE PROHORMONE,PROANP,ATRIOPEPTIGEN,CARDIODILATIN, COMPND 13 CDD,PREPROCDD-ANF; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: NPR1; SOURCE 6 EXPRESSION_SYSTEM: RATTUS NORVEGICUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10116; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: RAT; SOURCE 12 ORGANISM_TAXID: 10116 KEYWDS RECEPTOR-HORMONE COMPLEX, NATRIURETIC PEPTIDE, NATRIURETIC PEPTIDE KEYWDS 2 RECEPTOR, GUANYLYL-CYCLASE-COUPLED RECEPTOR, SIGNAL TRANSMISSION, KEYWDS 3 ROTATION MECHANISM, SIGNALING PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.OGAWA REVDAT 2 29-NOV-23 7BRL 1 REMARK REVDAT 1 31-MAR-21 7BRL 0 JRNL AUTH H.OGAWA JRNL TITL STRUCTURAL INSIGHT INTO HORMONE-RECOGNITION AND JRNL TITL 2 TRANSMEMBRANE SIGNALING BY THE ATRIAL NATRIURETIC PEPTIDE JRNL TITL 3 RECEPTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 24700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.080 REMARK 3 FREE R VALUE TEST SET COUNT : 761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5170 - 5.4656 0.96 4770 148 0.1722 0.1986 REMARK 3 2 5.4656 - 4.3412 0.94 4585 153 0.1805 0.2234 REMARK 3 3 4.3412 - 3.7933 0.99 4848 171 0.1945 0.2365 REMARK 3 4 3.7933 - 3.4469 0.99 4857 144 0.2491 0.3064 REMARK 3 5 3.4469 - 3.2000 0.99 4879 145 0.3072 0.3957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7354 REMARK 3 ANGLE : 0.822 10016 REMARK 3 CHIRALITY : 0.046 1116 REMARK 3 PLANARITY : 0.005 1290 REMARK 3 DIHEDRAL : 12.229 4358 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0715 11.6053 -12.9711 REMARK 3 T TENSOR REMARK 3 T11: 1.1338 T22: 0.3046 REMARK 3 T33: 0.4981 T12: -0.4338 REMARK 3 T13: 0.0795 T23: 0.1578 REMARK 3 L TENSOR REMARK 3 L11: 0.0843 L22: 0.1456 REMARK 3 L33: 0.1024 L12: -0.0386 REMARK 3 L13: 0.0599 L23: -0.0289 REMARK 3 S TENSOR REMARK 3 S11: -0.0623 S12: 0.0614 S13: 0.0070 REMARK 3 S21: 0.0886 S22: 0.0166 S23: 0.0296 REMARK 3 S31: -0.1922 S32: 0.5394 S33: 0.0273 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4248 12.6180 -5.4941 REMARK 3 T TENSOR REMARK 3 T11: 1.4263 T22: 0.2141 REMARK 3 T33: 0.6863 T12: 0.0321 REMARK 3 T13: 0.1568 T23: 0.1618 REMARK 3 L TENSOR REMARK 3 L11: 0.0218 L22: 0.1580 REMARK 3 L33: 0.1657 L12: -0.0056 REMARK 3 L13: -0.0171 L23: 0.1453 REMARK 3 S TENSOR REMARK 3 S11: 0.1425 S12: -0.2019 S13: -0.0818 REMARK 3 S21: 0.4488 S22: 0.0058 S23: 0.5293 REMARK 3 S31: -0.5968 S32: -0.1000 S33: -0.1358 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3133 9.6811 -19.0783 REMARK 3 T TENSOR REMARK 3 T11: 0.9638 T22: 0.5316 REMARK 3 T33: 1.0730 T12: 0.2391 REMARK 3 T13: 0.0959 T23: 0.1854 REMARK 3 L TENSOR REMARK 3 L11: 0.2700 L22: 0.1708 REMARK 3 L33: 0.1208 L12: 0.1869 REMARK 3 L13: -0.0785 L23: 0.0271 REMARK 3 S TENSOR REMARK 3 S11: -0.1820 S12: 0.0698 S13: 0.6574 REMARK 3 S21: 0.1223 S22: 0.1752 S23: 0.4154 REMARK 3 S31: -0.6327 S32: -0.2297 S33: 0.0087 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 288 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2489 22.9997 -15.9397 REMARK 3 T TENSOR REMARK 3 T11: 1.6995 T22: 0.2599 REMARK 3 T33: 0.8873 T12: -0.0793 REMARK 3 T13: -0.0044 T23: 0.3230 REMARK 3 L TENSOR REMARK 3 L11: 0.1228 L22: 0.3915 REMARK 3 L33: 0.4975 L12: 0.0950 REMARK 3 L13: -0.0127 L23: 0.3288 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.2999 S13: 0.5217 REMARK 3 S21: 0.0084 S22: -0.0217 S23: 0.6332 REMARK 3 S31: -1.4797 S32: -0.0014 S33: -0.1276 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5055 -11.2225 9.9250 REMARK 3 T TENSOR REMARK 3 T11: 1.3252 T22: -0.0280 REMARK 3 T33: 0.2205 T12: 0.4375 REMARK 3 T13: -0.1121 T23: 0.4193 REMARK 3 L TENSOR REMARK 3 L11: 0.1634 L22: 0.2080 REMARK 3 L33: 0.3496 L12: -0.0371 REMARK 3 L13: -0.2241 L23: 0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.0235 S13: -0.0033 REMARK 3 S21: -0.4432 S22: 0.2225 S23: 0.1160 REMARK 3 S31: 0.3799 S32: 0.4453 S33: 0.3214 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5963 -10.9720 15.9960 REMARK 3 T TENSOR REMARK 3 T11: 1.0406 T22: 0.4399 REMARK 3 T33: 1.1169 T12: -0.2517 REMARK 3 T13: -0.1608 T23: 0.1676 REMARK 3 L TENSOR REMARK 3 L11: 0.5391 L22: 0.1835 REMARK 3 L33: 0.2861 L12: -0.3002 REMARK 3 L13: 0.0087 L23: 0.0999 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: -0.1973 S13: -0.4729 REMARK 3 S21: -0.2906 S22: 0.1468 S23: 0.6103 REMARK 3 S31: 0.8978 S32: -0.3748 S33: 0.0635 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 288 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2773 -23.0158 16.1373 REMARK 3 T TENSOR REMARK 3 T11: 1.6574 T22: 0.2652 REMARK 3 T33: 0.8618 T12: 0.0374 REMARK 3 T13: -0.0363 T23: 0.3176 REMARK 3 L TENSOR REMARK 3 L11: 0.1263 L22: 0.3194 REMARK 3 L33: 0.4757 L12: -0.0470 REMARK 3 L13: -0.0435 L23: 0.3287 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.3410 S13: -0.5656 REMARK 3 S21: -0.0934 S22: -0.0030 S23: 0.4819 REMARK 3 S31: 1.3790 S32: 0.1061 S33: -0.1611 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0805 -0.0419 0.0863 REMARK 3 T TENSOR REMARK 3 T11: 0.9149 T22: 0.3891 REMARK 3 T33: -0.0089 T12: 0.0154 REMARK 3 T13: 0.0677 T23: 0.1651 REMARK 3 L TENSOR REMARK 3 L11: 0.0101 L22: 0.0030 REMARK 3 L33: 0.0125 L12: -0.0017 REMARK 3 L13: -0.0099 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.0050 S13: -0.0071 REMARK 3 S21: -0.0060 S22: -0.0584 S23: -0.0041 REMARK 3 S31: 0.0071 S32: 0.1162 S33: -0.0128 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BRL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 - 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 716.1 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 716.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24713 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 23.10 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.08 REMARK 200 STARTING MODEL: 1DP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, MES, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.13833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 180.27667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 135.20750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 225.34583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.06917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 427 REMARK 465 GLU A 428 REMARK 465 ASP A 429 REMARK 465 PRO A 430 REMARK 465 ALA A 431 REMARK 465 CYS A 432 REMARK 465 ASN A 433 REMARK 465 GLN A 434 REMARK 465 ASP A 435 REMARK 465 ASN B 427 REMARK 465 GLU B 428 REMARK 465 ASP B 429 REMARK 465 PRO B 430 REMARK 465 ALA B 431 REMARK 465 CYS B 432 REMARK 465 ASN B 433 REMARK 465 GLN B 434 REMARK 465 ASP B 435 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 217 NH1 ARG B 262 2.13 REMARK 500 O4 NAG E 2 O5 MAN E 3 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 41 79.92 36.74 REMARK 500 ASN A 55 -153.31 -83.59 REMARK 500 ASP A 62 2.72 -65.59 REMARK 500 SER A 77 71.50 45.31 REMARK 500 HIS A 148 -67.57 -132.98 REMARK 500 ARG A 205 -30.17 -130.81 REMARK 500 ASN A 354 76.82 48.19 REMARK 500 PRO A 421 -160.59 -73.96 REMARK 500 LYS A 422 -89.50 -69.43 REMARK 500 LEU B 41 79.39 37.50 REMARK 500 ASN B 55 -159.61 -82.52 REMARK 500 ASP B 62 0.15 -60.36 REMARK 500 SER B 77 72.63 44.30 REMARK 500 HIS B 148 -69.87 -132.06 REMARK 500 ASN B 354 77.29 47.48 REMARK 500 ARG B 355 125.93 -170.14 REMARK 500 PRO B 421 -159.49 -74.57 REMARK 500 LYS B 422 -92.62 -71.81 REMARK 500 ARG L 11 171.59 62.00 REMARK 500 ARG L 11 172.23 61.14 REMARK 500 ARG L 14 18.05 -65.28 REMARK 500 ARG L 14 19.37 -67.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DP4 RELATED DB: PDB REMARK 900 RELATED ID: 1T34 RELATED DB: PDB DBREF 7BRL A 1 435 UNP P18910 ANPRA_RAT 29 463 DBREF 7BRL B 1 435 UNP P18910 ANPRA_RAT 29 463 DBREF 7BRL L 1 15 UNP P01161 ANF_RAT 123 150 SEQADV 7BRL L UNP P01161 SER 123 DELETION SEQADV 7BRL L UNP P01161 LEU 124 DELETION SEQADV 7BRL L UNP P01161 ARG 125 DELETION SEQADV 7BRL L UNP P01161 GLN 140 DELETION SEQADV 7BRL L UNP P01161 SER 141 DELETION SEQADV 7BRL L UNP P01161 GLY 142 DELETION SEQADV 7BRL L UNP P01161 LEU 143 DELETION SEQADV 7BRL L UNP P01161 GLY 144 DELETION SEQADV 7BRL L UNP P01161 ASN 146 DELETION SEQADV 7BRL L UNP P01161 SER 147 DELETION SEQADV 7BRL L UNP P01161 PHE 148 DELETION SEQADV 7BRL L UNP P01161 ARG 149 DELETION SEQADV 7BRL L UNP P01161 TYR 150 DELETION SEQRES 1 A 435 SER ASP LEU THR VAL ALA VAL VAL LEU PRO LEU THR ASN SEQRES 2 A 435 THR SER TYR PRO TRP SER TRP ALA ARG VAL GLY PRO ALA SEQRES 3 A 435 VAL GLU LEU ALA LEU ALA ARG VAL LYS ALA ARG PRO ASP SEQRES 4 A 435 LEU LEU PRO GLY TRP THR VAL ARG MET VAL LEU GLY SER SEQRES 5 A 435 SER GLU ASN ALA ALA GLY VAL CYS SER ASP THR ALA ALA SEQRES 6 A 435 PRO LEU ALA ALA VAL ASP LEU LYS TRP GLU HIS SER PRO SEQRES 7 A 435 ALA VAL PHE LEU GLY PRO GLY CYS VAL TYR SER ALA ALA SEQRES 8 A 435 PRO VAL GLY ARG PHE THR ALA HIS TRP ARG VAL PRO LEU SEQRES 9 A 435 LEU THR ALA GLY ALA PRO ALA LEU GLY ILE GLY VAL LYS SEQRES 10 A 435 ASP GLU TYR ALA LEU THR THR ARG THR GLY PRO SER HIS SEQRES 11 A 435 VAL LYS LEU GLY ASP PHE VAL THR ALA LEU HIS ARG ARG SEQRES 12 A 435 LEU GLY TRP GLU HIS GLN ALA LEU VAL LEU TYR ALA ASP SEQRES 13 A 435 ARG LEU GLY ASP ASP ARG PRO CYS PHE PHE ILE VAL GLU SEQRES 14 A 435 GLY LEU TYR MET ARG VAL ARG GLU ARG LEU ASN ILE THR SEQRES 15 A 435 VAL ASN HIS GLN GLU PHE VAL GLU GLY ASP PRO ASP HIS SEQRES 16 A 435 TYR PRO LYS LEU LEU ARG ALA VAL ARG ARG LYS GLY ARG SEQRES 17 A 435 VAL ILE TYR ILE CYS SER SER PRO ASP ALA PHE ARG ASN SEQRES 18 A 435 LEU MET LEU LEU ALA LEU ASN ALA GLY LEU THR GLY GLU SEQRES 19 A 435 ASP TYR VAL PHE PHE HIS LEU ASP VAL PHE GLY GLN SER SEQRES 20 A 435 LEU LYS SER ALA GLN GLY LEU VAL PRO GLN LYS PRO TRP SEQRES 21 A 435 GLU ARG GLY ASP GLY GLN ASP ARG SER ALA ARG GLN ALA SEQRES 22 A 435 PHE GLN ALA ALA LYS ILE ILE THR TYR LYS GLU PRO ASP SEQRES 23 A 435 ASN PRO GLU TYR LEU GLU PHE LEU LYS GLN LEU LYS LEU SEQRES 24 A 435 LEU ALA ASP LYS LYS PHE ASN PHE THR VAL GLU ASP GLY SEQRES 25 A 435 LEU LYS ASN ILE ILE PRO ALA SER PHE HIS ASP GLY LEU SEQRES 26 A 435 LEU LEU TYR VAL GLN ALA VAL THR GLU THR LEU ALA GLN SEQRES 27 A 435 GLY GLY THR VAL THR ASP GLY GLU ASN ILE THR GLN ARG SEQRES 28 A 435 MET TRP ASN ARG SER PHE GLN GLY VAL THR GLY TYR LEU SEQRES 29 A 435 LYS ILE ASP ARG ASN GLY ASP ARG ASP THR ASP PHE SER SEQRES 30 A 435 LEU TRP ASP MET ASP PRO GLU THR GLY ALA PHE ARG VAL SEQRES 31 A 435 VAL LEU ASN TYR ASN GLY THR SER GLN GLU LEU MET ALA SEQRES 32 A 435 VAL SER GLU HIS LYS LEU TYR TRP PRO LEU GLY TYR PRO SEQRES 33 A 435 PRO PRO ASP VAL PRO LYS CYS GLY PHE ASP ASN GLU ASP SEQRES 34 A 435 PRO ALA CYS ASN GLN ASP SEQRES 1 B 435 SER ASP LEU THR VAL ALA VAL VAL LEU PRO LEU THR ASN SEQRES 2 B 435 THR SER TYR PRO TRP SER TRP ALA ARG VAL GLY PRO ALA SEQRES 3 B 435 VAL GLU LEU ALA LEU ALA ARG VAL LYS ALA ARG PRO ASP SEQRES 4 B 435 LEU LEU PRO GLY TRP THR VAL ARG MET VAL LEU GLY SER SEQRES 5 B 435 SER GLU ASN ALA ALA GLY VAL CYS SER ASP THR ALA ALA SEQRES 6 B 435 PRO LEU ALA ALA VAL ASP LEU LYS TRP GLU HIS SER PRO SEQRES 7 B 435 ALA VAL PHE LEU GLY PRO GLY CYS VAL TYR SER ALA ALA SEQRES 8 B 435 PRO VAL GLY ARG PHE THR ALA HIS TRP ARG VAL PRO LEU SEQRES 9 B 435 LEU THR ALA GLY ALA PRO ALA LEU GLY ILE GLY VAL LYS SEQRES 10 B 435 ASP GLU TYR ALA LEU THR THR ARG THR GLY PRO SER HIS SEQRES 11 B 435 VAL LYS LEU GLY ASP PHE VAL THR ALA LEU HIS ARG ARG SEQRES 12 B 435 LEU GLY TRP GLU HIS GLN ALA LEU VAL LEU TYR ALA ASP SEQRES 13 B 435 ARG LEU GLY ASP ASP ARG PRO CYS PHE PHE ILE VAL GLU SEQRES 14 B 435 GLY LEU TYR MET ARG VAL ARG GLU ARG LEU ASN ILE THR SEQRES 15 B 435 VAL ASN HIS GLN GLU PHE VAL GLU GLY ASP PRO ASP HIS SEQRES 16 B 435 TYR PRO LYS LEU LEU ARG ALA VAL ARG ARG LYS GLY ARG SEQRES 17 B 435 VAL ILE TYR ILE CYS SER SER PRO ASP ALA PHE ARG ASN SEQRES 18 B 435 LEU MET LEU LEU ALA LEU ASN ALA GLY LEU THR GLY GLU SEQRES 19 B 435 ASP TYR VAL PHE PHE HIS LEU ASP VAL PHE GLY GLN SER SEQRES 20 B 435 LEU LYS SER ALA GLN GLY LEU VAL PRO GLN LYS PRO TRP SEQRES 21 B 435 GLU ARG GLY ASP GLY GLN ASP ARG SER ALA ARG GLN ALA SEQRES 22 B 435 PHE GLN ALA ALA LYS ILE ILE THR TYR LYS GLU PRO ASP SEQRES 23 B 435 ASN PRO GLU TYR LEU GLU PHE LEU LYS GLN LEU LYS LEU SEQRES 24 B 435 LEU ALA ASP LYS LYS PHE ASN PHE THR VAL GLU ASP GLY SEQRES 25 B 435 LEU LYS ASN ILE ILE PRO ALA SER PHE HIS ASP GLY LEU SEQRES 26 B 435 LEU LEU TYR VAL GLN ALA VAL THR GLU THR LEU ALA GLN SEQRES 27 B 435 GLY GLY THR VAL THR ASP GLY GLU ASN ILE THR GLN ARG SEQRES 28 B 435 MET TRP ASN ARG SER PHE GLN GLY VAL THR GLY TYR LEU SEQRES 29 B 435 LYS ILE ASP ARG ASN GLY ASP ARG ASP THR ASP PHE SER SEQRES 30 B 435 LEU TRP ASP MET ASP PRO GLU THR GLY ALA PHE ARG VAL SEQRES 31 B 435 VAL LEU ASN TYR ASN GLY THR SER GLN GLU LEU MET ALA SEQRES 32 B 435 VAL SER GLU HIS LYS LEU TYR TRP PRO LEU GLY TYR PRO SEQRES 33 B 435 PRO PRO ASP VAL PRO LYS CYS GLY PHE ASP ASN GLU ASP SEQRES 34 B 435 PRO ALA CYS ASN GLN ASP SEQRES 1 L 15 ARG SER SER CYS PHE GLY GLY ARG ILE ASP ARG ILE GLY SEQRES 2 L 15 ALA CYS HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET MAN D 4 11 HET NAG E 1 14 HET NAG E 2 14 HET MAN E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET MAN F 3 11 HET MAN F 4 11 HET CL A 508 1 HET CL B 508 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 8(C8 H15 N O6) FORMUL 4 MAN 6(C6 H12 O6) FORMUL 8 CL 2(CL 1-) HELIX 1 AA1 SER A 19 ARG A 37 1 19 HELIX 2 AA2 THR A 63 SER A 77 1 15 HELIX 3 AA3 CYS A 86 ARG A 101 1 16 HELIX 4 AA4 LEU A 112 VAL A 116 5 5 HELIX 5 AA5 SER A 129 ARG A 143 1 15 HELIX 6 AA6 ARG A 162 ASN A 180 1 19 HELIX 7 AA7 ASP A 194 ARG A 204 1 11 HELIX 8 AA8 SER A 215 ALA A 229 1 15 HELIX 9 AA9 GLN A 266 PHE A 274 1 9 HELIX 10 AB1 ASN A 287 ASN A 306 1 20 HELIX 11 AB2 GLY A 312 LYS A 314 5 3 HELIX 12 AB3 ASN A 315 GLN A 338 1 24 HELIX 13 AB4 ASP A 344 TRP A 353 1 10 HELIX 14 AB5 SER B 19 ARG B 37 1 19 HELIX 15 AB6 THR B 63 SER B 77 1 15 HELIX 16 AB7 CYS B 86 ARG B 101 1 16 HELIX 17 AB8 LEU B 112 VAL B 116 5 5 HELIX 18 AB9 SER B 129 ARG B 143 1 15 HELIX 19 AC1 ARG B 162 ASN B 180 1 19 HELIX 20 AC2 ASP B 194 ARG B 204 1 11 HELIX 21 AC3 SER B 215 ALA B 229 1 15 HELIX 22 AC4 GLN B 266 PHE B 274 1 9 HELIX 23 AC5 ASN B 287 ASN B 306 1 20 HELIX 24 AC6 GLY B 312 LYS B 314 5 3 HELIX 25 AC7 ASN B 315 GLN B 338 1 24 HELIX 26 AC8 ASP B 344 TRP B 353 1 10 SHEET 1 AA1 5 ARG A 47 SER A 52 0 SHEET 2 AA1 5 THR A 4 LEU A 9 1 N VAL A 7 O VAL A 49 SHEET 3 AA1 5 VAL A 80 LEU A 82 1 O LEU A 82 N VAL A 8 SHEET 4 AA1 5 LEU A 104 THR A 106 1 O LEU A 105 N PHE A 81 SHEET 5 AA1 5 THR A 123 ARG A 125 1 O THR A 124 N LEU A 104 SHEET 1 AA2 8 THR A 182 PHE A 188 0 SHEET 2 AA2 8 GLN A 149 ALA A 155 1 N ALA A 150 O ASN A 184 SHEET 3 AA2 8 VAL A 209 CYS A 213 1 O VAL A 209 N LEU A 151 SHEET 4 AA2 8 VAL A 237 LEU A 241 1 O PHE A 239 N ILE A 210 SHEET 5 AA2 8 ALA A 277 TYR A 282 1 O LYS A 278 N PHE A 238 SHEET 6 AA2 8 PHE A 376 MET A 381 -1 O TRP A 379 N ILE A 279 SHEET 7 AA2 8 PHE A 388 ASN A 395 -1 O VAL A 391 N LEU A 378 SHEET 8 AA2 8 GLU A 400 ALA A 403 -1 O MET A 402 N ASN A 393 SHEET 1 AA3 2 ARG A 355 GLY A 359 0 SHEET 2 AA3 2 GLY A 362 ILE A 366 -1 O GLY A 362 N GLY A 359 SHEET 1 AA4 5 ARG B 47 SER B 52 0 SHEET 2 AA4 5 THR B 4 LEU B 9 1 N VAL B 7 O VAL B 49 SHEET 3 AA4 5 VAL B 80 LEU B 82 1 O LEU B 82 N VAL B 8 SHEET 4 AA4 5 LEU B 104 THR B 106 1 O LEU B 105 N PHE B 81 SHEET 5 AA4 5 THR B 123 ARG B 125 1 O THR B 124 N LEU B 104 SHEET 1 AA5 8 THR B 182 PHE B 188 0 SHEET 2 AA5 8 GLN B 149 ALA B 155 1 N VAL B 152 O ASN B 184 SHEET 3 AA5 8 VAL B 209 CYS B 213 1 O TYR B 211 N LEU B 151 SHEET 4 AA5 8 VAL B 237 LEU B 241 1 O LEU B 241 N ILE B 212 SHEET 5 AA5 8 ALA B 277 TYR B 282 1 O LYS B 278 N PHE B 238 SHEET 6 AA5 8 PHE B 376 MET B 381 -1 O TRP B 379 N ILE B 279 SHEET 7 AA5 8 PHE B 388 ASN B 395 -1 O TYR B 394 N PHE B 376 SHEET 8 AA5 8 GLU B 400 ALA B 403 -1 O MET B 402 N ASN B 393 SHEET 1 AA6 2 ARG B 355 GLY B 359 0 SHEET 2 AA6 2 GLY B 362 ILE B 366 -1 O GLY B 362 N GLY B 359 SSBOND 1 CYS A 60 CYS A 86 1555 1555 2.04 SSBOND 2 CYS A 164 CYS A 213 1555 1555 2.06 SSBOND 3 CYS B 60 CYS B 86 1555 1555 2.04 SSBOND 4 CYS B 164 CYS B 213 1555 1555 2.06 SSBOND 5 CYS L 7 CYS L 23 1555 1555 2.03 LINK ND2 ASN A 13 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 395 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B 13 C1 NAG E 1 1555 1555 1.46 LINK ND2 ASN B 395 C1 NAG F 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.38 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.38 LINK O3 MAN D 3 C1 MAN D 4 1555 1555 1.38 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.38 LINK O4 NAG E 2 C1 MAN E 3 1555 1555 1.38 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.38 LINK O4 NAG F 2 C1 MAN F 3 1555 1555 1.38 LINK O3 MAN F 3 C1 MAN F 4 1555 1555 1.38 CISPEP 1 GLY A 83 PRO A 84 0 4.23 CISPEP 2 VAL A 255 PRO A 256 0 1.11 CISPEP 3 GLY B 83 PRO B 84 0 -2.17 CISPEP 4 VAL B 255 PRO B 256 0 1.30 CRYST1 100.273 100.273 270.415 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009973 0.005758 0.000000 0.00000 SCALE2 0.000000 0.011516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003698 0.00000