HEADER MEMBRANE PROTEIN 29-MAR-20 7BRQ TITLE CRYSTAL STRUCTURE OF HUMAN FAM134B LIR FUSED TO HUMAN GABARAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULOPHAGY REGULATOR 1,GAMMA-AMINOBUTYRIC ACID RECEPTOR- COMPND 3 ASSOCIATED PROTEIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: FAM134B, RETICULOPHAGY RECEPTOR 1,GABA(A) RECEPTOR- COMPND 6 ASSOCIATED PROTEIN,MM46; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FAM134B, GABARAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS AUTOPHAGY, ENDOPLASMIC RETICULUM, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMASAKI,N.N.NODA REVDAT 3 29-NOV-23 7BRQ 1 REMARK REVDAT 2 22-JUL-20 7BRQ 1 JRNL REVDAT 1 08-JUL-20 7BRQ 0 JRNL AUTH K.MOCHIDA,A.YAMASAKI,K.MATOBA,H.KIRISAKO,N.N.NODA, JRNL AUTH 2 H.NAKATOGAWA JRNL TITL SUPER-ASSEMBLY OF ER-PHAGY RECEPTOR ATG40 INDUCES LOCAL ER JRNL TITL 2 REMODELING AT CONTACTS WITH FORMING AUTOPHAGOSOMAL JRNL TITL 3 MEMBRANES. JRNL REF NAT COMMUN V. 11 3306 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32620754 JRNL DOI 10.1038/S41467-020-17163-Y REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2450 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 24609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9460 - 2.9196 1.00 2756 145 0.1686 0.1793 REMARK 3 2 2.9196 - 2.3174 1.00 2679 141 0.1935 0.2219 REMARK 3 3 2.3174 - 2.0245 1.00 2662 141 0.1910 0.1967 REMARK 3 4 2.0245 - 1.8394 1.00 2641 139 0.1979 0.1912 REMARK 3 5 1.8394 - 1.7076 1.00 2638 138 0.2101 0.2378 REMARK 3 6 1.7076 - 1.6069 1.00 2629 139 0.2170 0.2492 REMARK 3 7 1.6069 - 1.5264 1.00 2643 139 0.2402 0.2595 REMARK 3 8 1.5264 - 1.4600 0.96 2535 133 0.2729 0.3100 REMARK 3 9 1.4600 - 1.4040 0.83 2195 116 0.3440 0.3793 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1142 REMARK 3 ANGLE : 0.790 1544 REMARK 3 CHIRALITY : 0.075 160 REMARK 3 PLANARITY : 0.006 202 REMARK 3 DIHEDRAL : 14.919 431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.6160 57.4864 9.0353 REMARK 3 T TENSOR REMARK 3 T11: 0.2568 T22: 0.3007 REMARK 3 T33: 0.7448 T12: 0.0300 REMARK 3 T13: 0.0582 T23: 0.0705 REMARK 3 L TENSOR REMARK 3 L11: 5.0223 L22: 2.1688 REMARK 3 L33: 5.5501 L12: 2.7433 REMARK 3 L13: -2.7859 L23: -2.6551 REMARK 3 S TENSOR REMARK 3 S11: 0.1640 S12: -0.2441 S13: 0.0865 REMARK 3 S21: -0.0002 S22: -0.2712 S23: -1.6609 REMARK 3 S31: 0.0327 S32: 0.7876 S33: 0.1578 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.2999 38.1387 12.4266 REMARK 3 T TENSOR REMARK 3 T11: 0.2744 T22: 0.3185 REMARK 3 T33: 0.5852 T12: 0.0643 REMARK 3 T13: 0.0402 T23: 0.0973 REMARK 3 L TENSOR REMARK 3 L11: 4.3455 L22: 7.0734 REMARK 3 L33: 3.2804 L12: 4.8951 REMARK 3 L13: -3.7576 L23: -4.4584 REMARK 3 S TENSOR REMARK 3 S11: 0.3582 S12: -0.1477 S13: 0.1858 REMARK 3 S21: -0.2785 S22: -0.7649 S23: -1.5625 REMARK 3 S31: 0.0160 S32: 0.7038 S33: 0.5452 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.5621 20.4425 15.6407 REMARK 3 T TENSOR REMARK 3 T11: 0.3080 T22: 0.2368 REMARK 3 T33: 0.5022 T12: 0.0538 REMARK 3 T13: -0.1000 T23: 0.0628 REMARK 3 L TENSOR REMARK 3 L11: 7.9423 L22: 5.8220 REMARK 3 L33: 3.0454 L12: -4.6085 REMARK 3 L13: -1.9335 L23: 3.1632 REMARK 3 S TENSOR REMARK 3 S11: 0.1324 S12: -0.3457 S13: -1.0598 REMARK 3 S21: 0.8011 S22: 0.3318 S23: 0.0670 REMARK 3 S31: 0.4490 S32: 0.2359 S33: -0.3605 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.8419 18.7323 2.4644 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.2943 REMARK 3 T33: 0.4465 T12: 0.0666 REMARK 3 T13: -0.0415 T23: -0.1229 REMARK 3 L TENSOR REMARK 3 L11: 4.1896 L22: 3.9530 REMARK 3 L33: 5.4111 L12: -1.2020 REMARK 3 L13: 4.7512 L23: -1.6703 REMARK 3 S TENSOR REMARK 3 S11: 0.1692 S12: 0.6838 S13: -0.5561 REMARK 3 S21: -0.3224 S22: -0.4509 S23: 0.0408 REMARK 3 S31: 0.3123 S32: 0.1522 S33: 0.2056 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.4974 33.0984 14.5143 REMARK 3 T TENSOR REMARK 3 T11: 0.1392 T22: 0.1177 REMARK 3 T33: 0.1935 T12: -0.0008 REMARK 3 T13: 0.0015 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.4991 L22: 2.1978 REMARK 3 L33: 1.7738 L12: -0.9599 REMARK 3 L13: -0.1722 L23: 0.6674 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -0.1897 S13: -0.5647 REMARK 3 S21: 0.1440 S22: 0.0322 S23: 0.2347 REMARK 3 S31: 0.0492 S32: -0.0319 S33: -0.0076 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.0469 34.8976 2.4124 REMARK 3 T TENSOR REMARK 3 T11: 0.2566 T22: 0.2574 REMARK 3 T33: 0.1340 T12: 0.0368 REMARK 3 T13: -0.0006 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 5.3811 L22: 7.8860 REMARK 3 L33: 1.5090 L12: -6.2818 REMARK 3 L13: 0.4577 L23: -0.0345 REMARK 3 S TENSOR REMARK 3 S11: 0.6780 S12: 0.8189 S13: 0.1270 REMARK 3 S21: -0.5035 S22: -0.6799 S23: -0.1938 REMARK 3 S31: -0.2422 S32: 0.1187 S33: 0.1114 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.5848 31.6465 12.8583 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: 0.1375 REMARK 3 T33: 0.1531 T12: 0.0078 REMARK 3 T13: -0.0306 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 3.4115 L22: 6.6984 REMARK 3 L33: 5.8337 L12: -1.0243 REMARK 3 L13: -0.4305 L23: 3.7638 REMARK 3 S TENSOR REMARK 3 S11: 0.0835 S12: -0.0341 S13: -0.2941 REMARK 3 S21: 0.0548 S22: 0.0709 S23: -0.2324 REMARK 3 S31: 0.0460 S32: 0.1004 S33: -0.1693 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24609 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.404 REMARK 200 RESOLUTION RANGE LOW (A) : 40.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.07419 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63130 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX DEV_2450 REMARK 200 STARTING MODEL: 1GNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.91 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE PH 5.5, 0.18 M POTASSIUM SODIUM TARTRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.66200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.66200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.66200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 393 O HOH A 402 2.03 REMARK 500 OD1 ASN A 102 O HOH A 301 2.05 REMARK 500 NE2 HIS A 90 O HOH A 302 2.10 REMARK 500 O HOH A 317 O HOH A 381 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 398 O HOH A 402 2755 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 103 -0.47 79.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BRN RELATED DB: PDB DBREF 7BRQ A 3 21 UNP Q9H6L5 RETR1_HUMAN 450 468 DBREF 7BRQ A 22 137 UNP O95166 GBRAP_HUMAN 1 116 SEQADV 7BRQ GLY A 1 UNP Q9H6L5 EXPRESSION TAG SEQADV 7BRQ PRO A 2 UNP Q9H6L5 EXPRESSION TAG SEQADV 7BRQ SER A 24 UNP O95166 PHE 3 ENGINEERED MUTATION SEQADV 7BRQ THR A 25 UNP O95166 VAL 4 ENGINEERED MUTATION SEQRES 1 A 137 GLY PRO GLU GLU GLY ASP ASP PHE GLU LEU LEU ASP GLN SEQRES 2 A 137 SER GLU LEU ASP GLN ILE GLU SER MET LYS SER THR TYR SEQRES 3 A 137 LYS GLU GLU HIS PRO PHE GLU LYS ARG ARG SER GLU GLY SEQRES 4 A 137 GLU LYS ILE ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL SEQRES 5 A 137 ILE VAL GLU LYS ALA PRO LYS ALA ARG ILE GLY ASP LEU SEQRES 6 A 137 ASP LYS LYS LYS TYR LEU VAL PRO SER ASP LEU THR VAL SEQRES 7 A 137 GLY GLN PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU SEQRES 8 A 137 ARG ALA GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN VAL SEQRES 9 A 137 ILE PRO PRO THR SER ALA THR MET GLY GLN LEU TYR GLN SEQRES 10 A 137 GLU HIS HIS GLU GLU ASP PHE PHE LEU TYR ILE ALA TYR SEQRES 11 A 137 SER ASP GLU SER VAL TYR GLY HET GOL A 201 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *105(H2 O) HELIX 1 AA1 GLN A 13 ILE A 19 1 7 HELIX 2 AA2 SER A 24 HIS A 30 1 7 HELIX 3 AA3 PRO A 31 TYR A 46 1 16 HELIX 4 AA4 THR A 77 LYS A 87 1 11 HELIX 5 AA5 THR A 111 HIS A 120 1 10 SHEET 1 AA1 4 LYS A 69 PRO A 73 0 SHEET 2 AA1 4 ARG A 49 LYS A 56 -1 N VAL A 52 O TYR A 70 SHEET 3 AA1 4 LEU A 126 SER A 131 1 O ILE A 128 N ILE A 53 SHEET 4 AA1 4 PHE A 98 PHE A 100 -1 N PHE A 98 O SER A 131 SITE 1 AC1 5 PHE A 32 HIS A 90 HOH A 304 HOH A 309 SITE 2 AC1 5 HOH A 342 CRYST1 81.892 81.892 33.324 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012211 0.007050 0.000000 0.00000 SCALE2 0.000000 0.014100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030008 0.00000