HEADER MEMBRANE PROTEIN 30-MAR-20 7BRT TITLE CRYSTAL STRUCTURE OF SEC62 LIR FUSED TO GABARAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLOCATION PROTEIN SEC62,GAMMA-AMINOBUTYRIC ACID COMPND 3 RECEPTOR-ASSOCIATED PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: TRANSLOCATION PROTEIN 1,HTP-1,GABA(A) RECEPTOR-ASSOCIATED COMPND 6 PROTEIN,MM46; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEC62, GABARAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS AUTOPHAGY, ENDOPLASMIC RETICULUM, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMASAKI,N.N.NODA REVDAT 3 29-NOV-23 7BRT 1 REMARK REVDAT 2 22-JUL-20 7BRT 1 JRNL REVDAT 1 08-JUL-20 7BRT 0 JRNL AUTH K.MOCHIDA,A.YAMASAKI,K.MATOBA,H.KIRISAKO,N.N.NODA, JRNL AUTH 2 H.NAKATOGAWA JRNL TITL SUPER-ASSEMBLY OF ER-PHAGY RECEPTOR ATG40 INDUCES LOCAL ER JRNL TITL 2 REMODELING AT CONTACTS WITH FORMING AUTOPHAGOSOMAL JRNL TITL 3 MEMBRANES. JRNL REF NAT COMMUN V. 11 3306 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32620754 JRNL DOI 10.1038/S41467-020-17163-Y REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2450 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.2108 - 4.5655 0.95 2756 146 0.1650 0.1844 REMARK 3 2 4.5655 - 3.6297 0.94 2704 150 0.1086 0.1433 REMARK 3 3 3.6297 - 3.1726 0.95 2753 139 0.1279 0.1449 REMARK 3 4 3.1726 - 2.8833 0.95 2701 140 0.1535 0.1684 REMARK 3 5 2.8833 - 2.6771 0.95 2725 146 0.1791 0.1824 REMARK 3 6 2.6771 - 2.5195 0.95 2724 143 0.1783 0.1817 REMARK 3 7 2.5195 - 2.3935 0.95 2787 142 0.1941 0.2510 REMARK 3 8 2.3935 - 2.2894 0.95 2766 147 0.2114 0.2194 REMARK 3 9 2.2894 - 2.2014 0.95 2719 143 0.2163 0.2249 REMARK 3 10 2.2014 - 2.1255 0.95 2725 144 0.2147 0.2464 REMARK 3 11 2.1255 - 2.0591 0.95 2739 145 0.2259 0.2546 REMARK 3 12 2.0591 - 2.0003 0.94 2699 141 0.2442 0.2555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4900 REMARK 3 OPERATOR: K,H,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2228 REMARK 3 ANGLE : 0.906 3013 REMARK 3 CHIRALITY : 0.061 316 REMARK 3 PLANARITY : 0.007 397 REMARK 3 DIHEDRAL : 15.694 1345 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1509 51.0919 38.5193 REMARK 3 T TENSOR REMARK 3 T11: 0.5479 T22: 0.6465 REMARK 3 T33: 0.0584 T12: -0.1766 REMARK 3 T13: 0.0265 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.9474 L22: 3.9323 REMARK 3 L33: 5.9154 L12: 0.5616 REMARK 3 L13: -0.5044 L23: -0.4448 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0097 S13: 0.0261 REMARK 3 S21: -0.1105 S22: 0.1186 S23: -0.5996 REMARK 3 S31: -0.8843 S32: 0.9574 S33: 0.0068 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3006 40.1514 20.7838 REMARK 3 T TENSOR REMARK 3 T11: 0.4200 T22: 0.3123 REMARK 3 T33: 0.1226 T12: 0.0576 REMARK 3 T13: -0.0205 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.6420 L22: 0.7993 REMARK 3 L33: 5.6704 L12: -0.1311 REMARK 3 L13: -1.6502 L23: 1.8676 REMARK 3 S TENSOR REMARK 3 S11: -0.2543 S12: -0.0005 S13: -0.3234 REMARK 3 S21: 0.4202 S22: 0.3130 S23: -0.0736 REMARK 3 S31: 0.8512 S32: 0.3490 S33: -0.0185 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1472 41.1310 17.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.3930 T22: 0.6486 REMARK 3 T33: 0.1483 T12: 0.1844 REMARK 3 T13: -0.0913 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 2.2424 L22: 3.6917 REMARK 3 L33: 2.3584 L12: 2.8176 REMARK 3 L13: -1.7642 L23: -1.8931 REMARK 3 S TENSOR REMARK 3 S11: -0.1827 S12: -0.5951 S13: -0.4467 REMARK 3 S21: 0.4964 S22: -0.2193 S23: -0.5559 REMARK 3 S31: 0.4220 S32: 0.5759 S33: -0.1501 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3879 43.3977 5.3943 REMARK 3 T TENSOR REMARK 3 T11: 0.3270 T22: 0.3281 REMARK 3 T33: 0.1046 T12: -0.0178 REMARK 3 T13: 0.0060 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.2087 L22: 0.8387 REMARK 3 L33: 1.7848 L12: -0.2685 REMARK 3 L13: -0.3329 L23: -0.0762 REMARK 3 S TENSOR REMARK 3 S11: -0.1880 S12: -0.2609 S13: -0.2161 REMARK 3 S21: -0.1048 S22: 0.1272 S23: -0.1316 REMARK 3 S31: 0.2562 S32: -0.0434 S33: 0.0831 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6887 47.8374 -2.1829 REMARK 3 T TENSOR REMARK 3 T11: 0.2575 T22: 0.3768 REMARK 3 T33: 0.1076 T12: 0.0183 REMARK 3 T13: 0.0012 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.6475 L22: 3.3092 REMARK 3 L33: 1.5024 L12: -0.3860 REMARK 3 L13: -0.8577 L23: -0.4771 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: 0.5604 S13: -0.1066 REMARK 3 S21: -0.0060 S22: 0.1929 S23: -0.1853 REMARK 3 S31: 0.2660 S32: -0.0538 S33: -0.2646 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7287 47.7057 8.3517 REMARK 3 T TENSOR REMARK 3 T11: 0.2784 T22: 0.3329 REMARK 3 T33: 0.0802 T12: -0.0269 REMARK 3 T13: 0.0238 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 1.9356 L22: 1.7949 REMARK 3 L33: 3.2055 L12: -0.7958 REMARK 3 L13: -0.0475 L23: -0.4564 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: -0.1195 S13: -0.0352 REMARK 3 S21: 0.0927 S22: 0.0117 S23: -0.0071 REMARK 3 S31: 0.0975 S32: -0.1534 S33: -0.0250 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3998 67.3561 -2.3042 REMARK 3 T TENSOR REMARK 3 T11: 0.4147 T22: 0.3312 REMARK 3 T33: 0.2197 T12: -0.0193 REMARK 3 T13: -0.0341 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 5.5399 L22: 8.1800 REMARK 3 L33: 6.8039 L12: -0.8796 REMARK 3 L13: -0.3527 L23: -6.6178 REMARK 3 S TENSOR REMARK 3 S11: -0.3282 S12: -0.4860 S13: 0.4653 REMARK 3 S21: 0.6624 S22: 0.3851 S23: -0.5633 REMARK 3 S31: -0.1176 S32: 0.1187 S33: -0.0482 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7128 55.0823 8.5688 REMARK 3 T TENSOR REMARK 3 T11: 0.3001 T22: 0.4287 REMARK 3 T33: 0.1132 T12: -0.0351 REMARK 3 T13: 0.0102 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 4.4837 L22: 8.0439 REMARK 3 L33: 4.0944 L12: 2.0572 REMARK 3 L13: -3.1909 L23: -4.9699 REMARK 3 S TENSOR REMARK 3 S11: -0.3107 S12: -0.3076 S13: 0.0878 REMARK 3 S21: 0.6699 S22: -0.0154 S23: -0.0802 REMARK 3 S31: -0.4569 S32: -0.3528 S33: 0.0907 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4605 61.6401 20.2027 REMARK 3 T TENSOR REMARK 3 T11: 0.3584 T22: 0.6154 REMARK 3 T33: 0.1388 T12: 0.0410 REMARK 3 T13: -0.1054 T23: -0.1011 REMARK 3 L TENSOR REMARK 3 L11: 2.3105 L22: 6.5927 REMARK 3 L33: 1.4566 L12: -0.7249 REMARK 3 L13: -0.1617 L23: -0.5097 REMARK 3 S TENSOR REMARK 3 S11: -0.6604 S12: 0.1359 S13: -0.1860 REMARK 3 S21: -0.3068 S22: 0.3096 S23: 0.9568 REMARK 3 S31: 0.3396 S32: -0.2181 S33: -0.0509 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6698 74.9520 19.0151 REMARK 3 T TENSOR REMARK 3 T11: 0.5151 T22: 0.4548 REMARK 3 T33: 0.2483 T12: 0.0175 REMARK 3 T13: -0.1463 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.9753 L22: 6.3242 REMARK 3 L33: 6.7087 L12: 4.3037 REMARK 3 L13: 4.4434 L23: 6.2990 REMARK 3 S TENSOR REMARK 3 S11: -0.6297 S12: 0.1284 S13: 0.3624 REMARK 3 S21: -0.8519 S22: 0.3189 S23: 0.4846 REMARK 3 S31: -1.1280 S32: 0.3409 S33: 0.3083 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6666 69.3957 28.1428 REMARK 3 T TENSOR REMARK 3 T11: 0.3483 T22: 0.3208 REMARK 3 T33: 0.1147 T12: -0.0071 REMARK 3 T13: -0.0259 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.5927 L22: 3.7764 REMARK 3 L33: 3.9259 L12: 1.4820 REMARK 3 L13: -1.0432 L23: -2.9281 REMARK 3 S TENSOR REMARK 3 S11: -0.1450 S12: 0.5777 S13: 0.2180 REMARK 3 S21: 0.3733 S22: 0.3154 S23: 0.0711 REMARK 3 S31: -0.6442 S32: 0.0307 S33: -0.1128 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4272 60.0264 32.3637 REMARK 3 T TENSOR REMARK 3 T11: 0.3458 T22: 0.3600 REMARK 3 T33: 0.0878 T12: 0.0333 REMARK 3 T13: -0.0032 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.5733 L22: 2.0414 REMARK 3 L33: 0.7724 L12: -0.2881 REMARK 3 L13: 0.5859 L23: -0.1421 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0208 S13: -0.0585 REMARK 3 S21: 0.1215 S22: 0.0200 S23: 0.0871 REMARK 3 S31: -0.2084 S32: -0.0631 S33: -0.0050 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6079 64.1563 21.7900 REMARK 3 T TENSOR REMARK 3 T11: 0.3442 T22: 0.3755 REMARK 3 T33: 0.1018 T12: 0.0651 REMARK 3 T13: -0.0314 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.5595 L22: 1.2969 REMARK 3 L33: 0.2372 L12: 0.0845 REMARK 3 L13: 0.1458 L23: 0.5282 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: 0.2692 S13: 0.0693 REMARK 3 S21: -0.5060 S22: 0.0580 S23: 0.3095 REMARK 3 S31: -0.0254 S32: 0.0901 S33: 0.0289 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8832 47.9250 28.2208 REMARK 3 T TENSOR REMARK 3 T11: 0.3224 T22: 0.3256 REMARK 3 T33: 0.1438 T12: -0.0794 REMARK 3 T13: 0.0016 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.9710 L22: 1.3706 REMARK 3 L33: 7.9319 L12: -0.9462 REMARK 3 L13: -2.1262 L23: 3.2855 REMARK 3 S TENSOR REMARK 3 S11: -0.7323 S12: 0.1273 S13: 0.0845 REMARK 3 S21: -0.4924 S22: 0.4084 S23: 0.1266 REMARK 3 S31: 0.3568 S32: -0.4710 S33: 0.1867 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1:2 OR RESID 4:41 OR REMARK 3 RESID 43:62 OR RESID 65:90 OR RESID 92: REMARK 3 110 OR RESID 112:114 OR RESID 116:134) REMARK 3 SELECTION : (CHAIN B AND (RESID 1:2 OR RESID 4:41 OR REMARK 3 RESID 43:62 OR RESID 65:90 OR RESID 92: REMARK 3 110 OR RESID 112:114 OR RESID 116:134) REMARK 3 ATOM PAIRS NUMBER : 1203 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18735 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 41.105 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.16380 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX DEV_2450 REMARK 200 STARTING MODEL: 1GNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.44350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.00600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.44450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.00600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.44350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.44450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 GLN A 114 CG CD OE1 NE2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 GLN B 111 CG CD OE1 NE2 REMARK 470 GLN B 114 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 282 O HOH A 309 1.61 REMARK 500 O HOH B 292 O HOH B 321 1.81 REMARK 500 O HOH A 236 O HOH A 269 1.82 REMARK 500 O HOH B 306 O HOH B 335 1.83 REMARK 500 O HOH A 217 O HOH A 318 1.84 REMARK 500 O HOH B 305 O HOH B 317 1.85 REMARK 500 O HOH A 265 O HOH A 287 1.86 REMARK 500 O HOH B 250 O HOH B 339 1.87 REMARK 500 O HOH A 270 O HOH A 322 1.89 REMARK 500 O HOH A 327 O HOH A 333 1.95 REMARK 500 O HOH A 286 O HOH A 307 1.95 REMARK 500 NH1 ARG A 40 O HOH A 201 1.96 REMARK 500 O HOH B 245 O HOH B 308 1.97 REMARK 500 O HOH A 207 O HOH A 317 1.98 REMARK 500 O HOH B 331 O HOH B 334 1.99 REMARK 500 O SER A 128 O HOH A 202 1.99 REMARK 500 O HOH B 254 O HOH B 280 2.01 REMARK 500 O HOH B 270 O HOH B 334 2.01 REMARK 500 OD1 ASP A 61 O HOH A 203 2.02 REMARK 500 O HOH B 205 O HOH B 307 2.04 REMARK 500 O HOH A 269 O HOH A 323 2.04 REMARK 500 OG SER B 106 O HOH B 201 2.06 REMARK 500 NZ LYS B 10 O HOH B 202 2.07 REMARK 500 O HOH B 204 O HOH B 206 2.08 REMARK 500 NE2 GLN A 111 O HOH A 204 2.09 REMARK 500 O HOH B 244 O HOH B 327 2.09 REMARK 500 OE1 GLU B 35 O HOH B 203 2.10 REMARK 500 OE1 GLU B 14 O HOH B 204 2.10 REMARK 500 OE1 GLN B 16 O HOH B 205 2.11 REMARK 500 O HOH B 278 O HOH B 330 2.12 REMARK 500 NH2 ARG A 83 O HOH B 202 2.14 REMARK 500 O HOH B 264 O HOH B 291 2.14 REMARK 500 O HOH B 305 O HOH B 328 2.14 REMARK 500 O HOH A 251 O HOH A 296 2.14 REMARK 500 OG1 THR B 17 O HOH B 206 2.14 REMARK 500 O HOH A 258 O HOH A 326 2.14 REMARK 500 O HOH B 309 O HOH B 349 2.14 REMARK 500 NZ LYS B 84 O HOH B 207 2.15 REMARK 500 OH TYR B 23 O HOH B 208 2.16 REMARK 500 OH TYR B 23 O HOH B 203 2.17 REMARK 500 OD2 ASP B 4 O HOH B 209 2.18 REMARK 500 O HOH B 281 O HOH B 334 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 236 O HOH B 305 3545 1.90 REMARK 500 O HOH A 267 O HOH B 290 4575 1.91 REMARK 500 O HOH A 297 O HOH B 278 4575 2.01 REMARK 500 O HOH A 206 O HOH B 220 1655 2.12 REMARK 500 O HOH A 252 O HOH B 207 3545 2.13 REMARK 500 O HOH A 323 O HOH B 317 3545 2.14 REMARK 500 O HOH A 310 O HOH A 337 4475 2.14 REMARK 500 O HOH A 280 O HOH B 307 1655 2.15 REMARK 500 O HOH A 258 O HOH B 302 1655 2.17 REMARK 500 O HOH A 273 O HOH B 307 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 43 75.27 -118.32 REMARK 500 HIS A 87 41.30 70.10 REMARK 500 HIS B 87 42.50 71.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BRN RELATED DB: PDB REMARK 900 RELATED ID: 7BRQ RELATED DB: PDB DBREF 7BRT A 3 18 UNP Q99442 SEC62_HUMAN 361 376 DBREF 7BRT A 19 134 UNP O95166 GBRAP_HUMAN 1 116 DBREF 7BRT B 3 18 UNP Q99442 SEC62_HUMAN 361 376 DBREF 7BRT B 19 134 UNP O95166 GBRAP_HUMAN 1 116 SEQADV 7BRT GLY A 1 UNP Q99442 EXPRESSION TAG SEQADV 7BRT PRO A 2 UNP Q99442 EXPRESSION TAG SEQADV 7BRT ASP A 9 UNP Q99442 THR 367 ENGINEERED MUTATION SEQADV 7BRT SER A 21 UNP O95166 PHE 3 ENGINEERED MUTATION SEQADV 7BRT THR A 22 UNP O95166 VAL 4 ENGINEERED MUTATION SEQADV 7BRT GLY B 1 UNP Q99442 EXPRESSION TAG SEQADV 7BRT PRO B 2 UNP Q99442 EXPRESSION TAG SEQADV 7BRT ASP B 9 UNP Q99442 THR 367 ENGINEERED MUTATION SEQADV 7BRT SER B 21 UNP O95166 PHE 3 ENGINEERED MUTATION SEQADV 7BRT THR B 22 UNP O95166 VAL 4 ENGINEERED MUTATION SEQRES 1 A 134 GLY PRO ASN ASP PHE GLU MET ILE ASP LYS GLU GLU LEU SEQRES 2 A 134 GLU GLN GLN THR ASP MET LYS SER THR TYR LYS GLU GLU SEQRES 3 A 134 HIS PRO PHE GLU LYS ARG ARG SER GLU GLY GLU LYS ILE SEQRES 4 A 134 ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU SEQRES 5 A 134 LYS ALA PRO LYS ALA ARG ILE GLY ASP LEU ASP LYS LYS SEQRES 6 A 134 LYS TYR LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE SEQRES 7 A 134 TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU ARG ALA GLU SEQRES 8 A 134 ASP ALA LEU PHE PHE PHE VAL ASN ASN VAL ILE PRO PRO SEQRES 9 A 134 THR SER ALA THR MET GLY GLN LEU TYR GLN GLU HIS HIS SEQRES 10 A 134 GLU GLU ASP PHE PHE LEU TYR ILE ALA TYR SER ASP GLU SEQRES 11 A 134 SER VAL TYR GLY SEQRES 1 B 134 GLY PRO ASN ASP PHE GLU MET ILE ASP LYS GLU GLU LEU SEQRES 2 B 134 GLU GLN GLN THR ASP MET LYS SER THR TYR LYS GLU GLU SEQRES 3 B 134 HIS PRO PHE GLU LYS ARG ARG SER GLU GLY GLU LYS ILE SEQRES 4 B 134 ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU SEQRES 5 B 134 LYS ALA PRO LYS ALA ARG ILE GLY ASP LEU ASP LYS LYS SEQRES 6 B 134 LYS TYR LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE SEQRES 7 B 134 TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU ARG ALA GLU SEQRES 8 B 134 ASP ALA LEU PHE PHE PHE VAL ASN ASN VAL ILE PRO PRO SEQRES 9 B 134 THR SER ALA THR MET GLY GLN LEU TYR GLN GLU HIS HIS SEQRES 10 B 134 GLU GLU ASP PHE PHE LEU TYR ILE ALA TYR SER ASP GLU SEQRES 11 B 134 SER VAL TYR GLY FORMUL 3 HOH *291(H2 O) HELIX 1 AA1 ASP A 9 ASP A 18 5 10 HELIX 2 AA2 SER A 21 HIS A 27 1 7 HELIX 3 AA3 PRO A 28 TYR A 43 1 16 HELIX 4 AA4 THR A 74 HIS A 87 1 14 HELIX 5 AA5 THR A 108 HIS A 117 1 10 HELIX 6 AA6 ASP B 9 ASP B 18 5 10 HELIX 7 AA7 SER B 21 HIS B 27 1 7 HELIX 8 AA8 PRO B 28 TYR B 43 1 16 HELIX 9 AA9 THR B 74 HIS B 87 1 14 HELIX 10 AB1 THR B 108 HIS B 117 1 10 SHEET 1 AA1 4 LYS A 66 PRO A 70 0 SHEET 2 AA1 4 ARG A 46 LYS A 53 -1 N VAL A 47 O VAL A 69 SHEET 3 AA1 4 LEU A 123 SER A 128 1 O ILE A 125 N ILE A 50 SHEET 4 AA1 4 PHE A 95 PHE A 97 -1 N PHE A 95 O SER A 128 SHEET 1 AA2 4 LYS B 66 PRO B 70 0 SHEET 2 AA2 4 ARG B 46 LYS B 53 -1 N VAL B 49 O TYR B 67 SHEET 3 AA2 4 LEU B 123 SER B 128 1 O ILE B 125 N ILE B 50 SHEET 4 AA2 4 PHE B 95 PHE B 97 -1 N PHE B 95 O SER B 128 CRYST1 42.887 42.889 144.012 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006944 0.00000