data_7BSG # _entry.id 7BSG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7BSG pdb_00007bsg 10.2210/pdb7bsg/pdb WWPDB D_1300016346 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Original sequence' _pdbx_database_related.db_id 6JR4 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7BSG _pdbx_database_status.recvd_initial_deposition_date 2020-03-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kondo, J.' 1 ? 'Cerretani, C.' 2 ? 'Vosch, T.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev CrystEngComm _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN 1466-8033 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 22 _citation.language ? _citation.page_first 8136 _citation.page_last 8141 _citation.title 'Mutation of position 5 as a crystal engineering tool for a NIR-emitting DNA-stabilized Ag16 nanocluster.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/D0CE01225D _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cerretani, C.' 1 ? primary 'Kondo, J.' 2 ? primary 'Vosch, T.' 3 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7BSG _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.882 _cell.length_a_esd ? _cell.length_b 33.677 _cell.length_b_esd ? _cell.length_c 76.750 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*CP*CP*GP*AP*GP*CP*GP*A)-3') ; 3039.008 2 ? ? ? 'SF file contains Friedel pairs.' 2 non-polymer syn 'SILVER ION' 107.868 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DA)(DC)(DC)(DG)(DA)(DG)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can CACCGAGCGA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DA n 1 7 DG n 1 8 DC n 1 9 DG n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7BSG _struct_ref.pdbx_db_accession 7BSG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7BSG A 1 ? 10 ? 7BSG 1 ? 10 ? 1 10 2 1 7BSG B 1 ? 10 ? 7BSG 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7BSG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.59 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 22.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'MOPS, Spermine, calcium nitrate, PEG' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-03-04 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 29.535 _reflns.entry_id 7BSG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.190 _reflns.d_resolution_low 22.350 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3775 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.200 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.147 _reflns.pdbx_Rmerge_I_obs 0.130 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.470 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.085 _reflns.pdbx_scaling_rejects 75 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.158 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 11879 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.190 2.250 ? 2.550 ? 809 305 ? 300 98.400 ? ? ? ? 0.319 ? ? ? ? ? ? ? ? 2.697 ? ? ? ? 0.402 ? ? 1 1 0.908 ? ? 2.250 2.310 ? 3.350 ? 715 262 ? 258 98.500 ? ? ? ? 0.275 ? ? ? ? ? ? ? ? 2.771 ? ? ? ? 0.345 ? ? 2 1 0.913 ? ? 2.310 2.380 ? 3.210 ? 762 273 ? 267 97.800 ? ? ? ? 0.263 ? ? ? ? ? ? ? ? 2.854 ? ? ? ? 0.327 ? ? 3 1 0.951 ? ? 2.380 2.450 ? 3.780 ? 725 260 ? 255 98.100 ? ? ? ? 0.225 ? ? ? ? ? ? ? ? 2.843 ? ? ? ? 0.277 ? ? 4 1 0.955 ? ? 2.450 2.530 ? 4.690 ? 727 257 ? 254 98.800 ? ? ? ? 0.202 ? ? ? ? ? ? ? ? 2.862 ? ? ? ? 0.248 ? ? 5 1 0.943 ? ? 2.530 2.620 ? 4.730 ? 783 234 ? 234 100.000 ? ? ? ? 0.197 ? ? ? ? ? ? ? ? 3.346 ? ? ? ? 0.238 ? ? 6 1 0.969 ? ? 2.620 2.720 ? 5.270 ? 787 237 ? 236 99.600 ? ? ? ? 0.194 ? ? ? ? ? ? ? ? 3.335 ? ? ? ? 0.233 ? ? 7 1 0.970 ? ? 2.720 2.830 ? 5.330 ? 838 245 ? 243 99.200 ? ? ? ? 0.210 ? ? ? ? ? ? ? ? 3.449 ? ? ? ? 0.250 ? ? 8 1 0.951 ? ? 2.830 2.960 ? 4.960 ? 717 208 ? 207 99.500 ? ? ? ? 0.225 ? ? ? ? ? ? ? ? 3.464 ? ? ? ? 0.268 ? ? 9 1 0.952 ? ? 2.960 3.100 ? 4.640 ? 716 206 ? 204 99.000 ? ? ? ? 0.234 ? ? ? ? ? ? ? ? 3.510 ? ? ? ? 0.278 ? ? 10 1 0.926 ? ? 3.100 3.270 ? 5.310 ? 660 192 ? 192 100.000 ? ? ? ? 0.184 ? ? ? ? ? ? ? ? 3.438 ? ? ? ? 0.218 ? ? 11 1 0.983 ? ? 3.270 3.470 ? 6.060 ? 620 184 ? 184 100.000 ? ? ? ? 0.172 ? ? ? ? ? ? ? ? 3.370 ? ? ? ? 0.204 ? ? 12 1 0.966 ? ? 3.470 3.710 ? 6.720 ? 592 198 ? 180 90.900 ? ? ? ? 0.166 ? ? ? ? ? ? ? ? 3.289 ? ? ? ? 0.198 ? ? 13 1 0.975 ? ? 3.710 4.010 ? 8.030 ? 436 145 ? 139 95.900 ? ? ? ? 0.146 ? ? ? ? ? ? ? ? 3.137 ? ? ? ? 0.177 ? ? 14 1 0.978 ? ? 4.010 4.390 ? 6.790 ? 532 161 ? 160 99.400 ? ? ? ? 0.137 ? ? ? ? ? ? ? ? 3.325 ? ? ? ? 0.165 ? ? 15 1 0.987 ? ? 4.390 4.910 ? 8.140 ? 386 133 ? 128 96.200 ? ? ? ? 0.115 ? ? ? ? ? ? ? ? 3.016 ? ? ? ? 0.142 ? ? 16 1 0.993 ? ? 4.910 5.670 ? 10.130 ? 411 129 ? 129 100.000 ? ? ? ? 0.096 ? ? ? ? ? ? ? ? 3.186 ? ? ? ? 0.116 ? ? 17 1 0.974 ? ? 5.670 6.940 ? 11.630 ? 289 91 ? 87 95.600 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 3.322 ? ? ? ? 0.113 ? ? 18 1 0.981 ? ? 6.940 9.810 ? 11.810 ? 248 81 ? 78 96.300 ? ? ? ? 0.069 ? ? ? ? ? ? ? ? 3.179 ? ? ? ? 0.083 ? ? 19 1 0.990 ? ? 9.810 22.350 ? 13.910 ? 126 43 ? 40 93.000 ? ? ? ? 0.061 ? ? ? ? ? ? ? ? 3.150 ? ? ? ? 0.073 ? ? 20 1 0.994 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 58.080 _refine.B_iso_mean 41.7302 _refine.B_iso_min 30.530 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7BSG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.1900 _refine.ls_d_res_low 22.3500 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3775 _refine.ls_number_reflns_R_free 365 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.2300 _refine.ls_percent_reflns_R_free 9.6700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2116 _refine.ls_R_factor_R_free 0.2466 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2079 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6JR4 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.0200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.1900 _refine_hist.d_res_low 22.3500 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 422 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 20 _refine_hist.pdbx_B_iso_mean_ligand 35.75 _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.1900 2.5100 1284 . 120 1164 98.0000 . . . 0.2319 0.0000 0.1991 . . . . . . . 3 . . . 'X-RAY DIFFRACTION' 2.5100 3.1600 1239 . 120 1119 99.0000 . . . 0.2243 0.0000 0.2178 . . . . . . . 3 . . . 'X-RAY DIFFRACTION' 3.1600 22.3500 1252 . 125 1127 97.0000 . . . 0.2668 0.0000 0.2066 . . . . . . . 3 . . . # _struct.entry_id 7BSG _struct.title 'Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (T5G mutant)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7BSG _struct_keywords.text 'Nanocluster, Silver, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 1 O2 ? ? ? 1_555 C AG . AG ? ? A DC 1 A AG 101 1_555 ? ? ? ? ? ? ? 2.505 ? ? metalc2 metalc ? ? A DC 1 N3 ? ? ? 1_555 G AG . AG ? ? A DC 1 A AG 105 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc3 metalc ? ? A DA 2 N1 ? ? ? 1_555 L AG . AG ? ? A DA 2 A AG 110 1_555 ? ? ? ? ? ? ? 2.530 ? ? metalc4 metalc ? ? A DC 3 N3 ? ? ? 1_555 C AG . AG ? ? A DC 3 A AG 101 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc5 metalc ? ? A DC 3 O2 ? ? ? 1_555 M AG . AG ? ? A DC 3 A AG 111 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc6 metalc ? ? A DC 4 N3 ? ? ? 1_555 D AG . AG ? ? A DC 4 A AG 102 1_555 ? ? ? ? ? ? ? 2.217 ? ? metalc7 metalc ? ? A DC 4 O2 ? ? ? 1_555 M AG . AG ? ? A DC 4 A AG 111 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc8 metalc ? ? A DC 4 O2 ? ? ? 1_555 N AG . AG ? ? A DC 4 A AG 112 1_555 ? ? ? ? ? ? ? 2.644 ? ? metalc9 metalc ? ? A DA 6 OP1 ? ? ? 1_555 F AG . AG ? ? A DA 6 A AG 104 1_555 ? ? ? ? ? ? ? 2.622 ? ? metalc10 metalc ? ? A DA 6 N7 ? ? ? 1_555 J AG . AG ? ? A DA 6 A AG 108 1_555 ? ? ? ? ? ? ? 2.274 ? ? metalc11 metalc ? ? A DA 6 OP2 ? ? ? 1_555 O AG . AG ? ? A DA 6 A AG 113 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc12 metalc ? ? A DG 7 N7 ? ? ? 1_555 F AG . AG ? ? A DG 7 A AG 104 1_555 ? ? ? ? ? ? ? 2.512 ? ? metalc13 metalc ? ? A DG 7 O6 ? ? ? 1_555 I AG . AG ? ? A DG 7 A AG 107 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc14 metalc ? ? A DG 7 O6 ? ? ? 1_555 J AG . AG ? ? A DG 7 A AG 108 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc15 metalc ? ? A DC 8 N3 ? ? ? 1_555 E AG . AG ? ? A DC 8 A AG 103 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc16 metalc ? ? A DC 8 O2 ? ? ? 1_555 I AG . AG ? ? A DC 8 A AG 107 1_555 ? ? ? ? ? ? ? 2.639 ? ? metalc17 metalc ? ? A DG 9 O6 ? ? ? 1_555 D AG . AG ? ? A DG 9 A AG 102 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc18 metalc ? ? A DG 9 N1 ? ? ? 1_555 H AG . AG ? ? A DG 9 A AG 106 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc19 metalc ? ? G AG . AG ? ? ? 1_555 B DC 3 O2 ? ? A AG 105 B DC 3 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc20 metalc ? ? G AG . AG ? ? ? 1_555 B DC 4 O2 ? ? A AG 105 B DC 4 1_555 ? ? ? ? ? ? ? 2.499 ? ? metalc21 metalc ? ? H AG . AG ? ? ? 1_555 B DC 4 O2 ? ? A AG 106 B DC 4 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc22 metalc ? ? J AG . AG ? ? ? 1_555 B DA 6 OP2 ? ? A AG 108 B DA 6 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc23 metalc ? ? L AG . AG ? ? ? 1_555 B DC 1 O2 ? ? A AG 110 B DC 1 1_555 ? ? ? ? ? ? ? 2.489 ? ? metalc24 metalc ? ? L AG . AG ? ? ? 1_555 B DC 3 O2 ? ? A AG 110 B DC 3 1_555 ? ? ? ? ? ? ? 2.593 ? ? metalc25 metalc ? ? L AG . AG ? ? ? 1_555 B DC 3 N3 ? ? A AG 110 B DC 3 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc26 metalc ? ? M AG . AG ? ? ? 1_555 B DC 1 N3 ? ? A AG 111 B DC 1 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc27 metalc ? ? N AG . AG ? ? ? 1_555 B DG 9 N1 ? ? A AG 112 B DG 9 1_555 ? ? ? ? ? ? ? 2.494 ? ? metalc28 metalc ? ? O AG . AG ? ? ? 1_555 B DG 7 O6 ? ? A AG 113 B DG 7 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc29 metalc ? ? B DC 4 N3 ? ? ? 1_555 P AG . AG ? ? B DC 4 B AG 101 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc30 metalc ? ? B DA 6 OP1 ? ? ? 1_555 R AG . AG ? ? B DA 6 B AG 103 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc31 metalc ? ? B DG 7 N7 ? ? ? 1_555 R AG . AG ? ? B DG 7 B AG 103 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc32 metalc ? ? B DC 8 N3 ? ? ? 1_555 Q AG . AG ? ? B DC 8 B AG 102 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc33 metalc ? ? B DC 8 O2 ? ? ? 1_555 S AG . AG ? ? B DC 8 B AG 104 1_555 ? ? ? ? ? ? ? 2.519 ? ? metalc34 metalc ? ? B DG 9 O6 ? ? ? 1_555 P AG . AG ? ? B DG 9 B AG 101 1_555 ? ? ? ? ? ? ? 2.381 ? ? hydrog1 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DC 3 N4 ? ? A DC 1 A DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DC 3 O2 ? ? A DC 1 B DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog3 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DC 4 O2 ? ? A DC 1 B DC 4 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DC 3 O2 ? ? A DA 2 B DC 3 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog5 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DC 1 N4 ? ? A DC 3 B DC 1 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog6 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 4 A DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog7 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DC 1 N4 ? ? A DC 4 B DC 1 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog9 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DG 5 N2 ? ? A DA 6 B DG 5 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog10 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DG 5 N3 ? ? A DA 6 B DG 5 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog11 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DG 5 N3 ? ? A DG 7 B DG 5 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog12 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 9 B DC 4 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog13 hydrog ? ? B DC 1 O2 ? ? ? 1_555 B DC 3 N4 ? ? B DC 1 B DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog14 hydrog ? ? B DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 4 B DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AG 101 ? 8 'binding site for residue AG A 101' AC2 Software A AG 102 ? 9 'binding site for residue AG A 102' AC3 Software A AG 103 ? 10 'binding site for residue AG A 103' AC4 Software A AG 104 ? 9 'binding site for residue AG A 104' AC5 Software A AG 105 ? 9 'binding site for residue AG A 105' AC6 Software A AG 106 ? 10 'binding site for residue AG A 106' AC7 Software A AG 107 ? 11 'binding site for residue AG A 107' AC8 Software A AG 108 ? 7 'binding site for residue AG A 108' AC9 Software A AG 109 ? 8 'binding site for residue AG A 109' AD1 Software A AG 110 ? 8 'binding site for residue AG A 110' AD2 Software A AG 111 ? 9 'binding site for residue AG A 111' AD3 Software A AG 112 ? 10 'binding site for residue AG A 112' AD4 Software A AG 113 ? 7 'binding site for residue AG A 113' AD5 Software B AG 101 ? 9 'binding site for residue AG B 101' AD6 Software B AG 102 ? 10 'binding site for residue AG B 102' AD7 Software B AG 103 ? 10 'binding site for residue AG B 103' AD8 Software B AG 104 ? 10 'binding site for residue AG B 104' AD9 Software B AG 105 ? 9 'binding site for residue AG B 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC A 1 ? DC A 1 . ? 1_555 ? 2 AC1 8 DA A 2 ? DA A 2 . ? 1_555 ? 3 AC1 8 DC A 3 ? DC A 3 . ? 1_555 ? 4 AC1 8 DG A 9 ? DG A 9 . ? 1_555 ? 5 AC1 8 AG D . ? AG A 102 . ? 1_555 ? 6 AC1 8 AG G . ? AG A 105 . ? 1_555 ? 7 AC1 8 AG L . ? AG A 110 . ? 1_555 ? 8 AC1 8 AG M . ? AG A 111 . ? 1_555 ? 9 AC2 9 DC A 4 ? DC A 4 . ? 1_555 ? 10 AC2 9 DG A 9 ? DG A 9 . ? 1_555 ? 11 AC2 9 AG C . ? AG A 101 . ? 1_555 ? 12 AC2 9 AG E . ? AG A 103 . ? 1_555 ? 13 AC2 9 AG G . ? AG A 105 . ? 1_555 ? 14 AC2 9 AG H . ? AG A 106 . ? 1_555 ? 15 AC2 9 AG M . ? AG A 111 . ? 1_555 ? 16 AC2 9 AG N . ? AG A 112 . ? 1_555 ? 17 AC2 9 AG P . ? AG B 101 . ? 1_555 ? 18 AC3 10 DC A 4 ? DC A 4 . ? 1_555 ? 19 AC3 10 DC A 8 ? DC A 8 . ? 1_555 ? 20 AC3 10 AG D . ? AG A 102 . ? 1_555 ? 21 AC3 10 AG F . ? AG A 104 . ? 1_555 ? 22 AC3 10 AG H . ? AG A 106 . ? 1_555 ? 23 AC3 10 AG I . ? AG A 107 . ? 1_555 ? 24 AC3 10 AG K . ? AG A 109 . ? 1_555 ? 25 AC3 10 AG N . ? AG A 112 . ? 1_555 ? 26 AC3 10 AG Q . ? AG B 102 . ? 1_555 ? 27 AC3 10 AG S . ? AG B 104 . ? 1_555 ? 28 AC4 9 DA A 6 ? DA A 6 . ? 1_555 ? 29 AC4 9 DG A 7 ? DG A 7 . ? 1_555 ? 30 AC4 9 DC A 8 ? DC A 8 . ? 1_555 ? 31 AC4 9 AG E . ? AG A 103 . ? 1_555 ? 32 AC4 9 AG I . ? AG A 107 . ? 1_555 ? 33 AC4 9 AG J . ? AG A 108 . ? 1_555 ? 34 AC4 9 AG O . ? AG A 113 . ? 1_555 ? 35 AC4 9 AG R . ? AG B 103 . ? 1_555 ? 36 AC4 9 AG S . ? AG B 104 . ? 1_555 ? 37 AC5 9 DC A 1 ? DC A 1 . ? 1_555 ? 38 AC5 9 DG A 9 ? DG A 9 . ? 1_555 ? 39 AC5 9 AG C . ? AG A 101 . ? 1_555 ? 40 AC5 9 AG D . ? AG A 102 . ? 1_555 ? 41 AC5 9 AG H . ? AG A 106 . ? 1_555 ? 42 AC5 9 AG L . ? AG A 110 . ? 1_555 ? 43 AC5 9 DC B 3 ? DC B 3 . ? 1_555 ? 44 AC5 9 DC B 4 ? DC B 4 . ? 1_555 ? 45 AC5 9 AG P . ? AG B 101 . ? 1_555 ? 46 AC6 10 DC A 8 ? DC A 8 . ? 1_555 ? 47 AC6 10 DG A 9 ? DG A 9 . ? 1_555 ? 48 AC6 10 AG D . ? AG A 102 . ? 1_555 ? 49 AC6 10 AG E . ? AG A 103 . ? 1_555 ? 50 AC6 10 AG G . ? AG A 105 . ? 1_555 ? 51 AC6 10 AG I . ? AG A 107 . ? 1_555 ? 52 AC6 10 DC B 4 ? DC B 4 . ? 1_555 ? 53 AC6 10 AG P . ? AG B 101 . ? 1_555 ? 54 AC6 10 AG Q . ? AG B 102 . ? 1_555 ? 55 AC6 10 AG T . ? AG B 105 . ? 1_555 ? 56 AC7 11 DG A 7 ? DG A 7 . ? 1_555 ? 57 AC7 11 DC A 8 ? DC A 8 . ? 1_555 ? 58 AC7 11 AG E . ? AG A 103 . ? 1_555 ? 59 AC7 11 AG F . ? AG A 104 . ? 1_555 ? 60 AC7 11 AG H . ? AG A 106 . ? 1_555 ? 61 AC7 11 AG J . ? AG A 108 . ? 1_555 ? 62 AC7 11 DA B 6 ? DA B 6 . ? 1_555 ? 63 AC7 11 AG Q . ? AG B 102 . ? 1_555 ? 64 AC7 11 AG R . ? AG B 103 . ? 1_555 ? 65 AC7 11 AG S . ? AG B 104 . ? 1_555 ? 66 AC7 11 AG T . ? AG B 105 . ? 1_555 ? 67 AC8 7 DA A 6 ? DA A 6 . ? 1_555 ? 68 AC8 7 DG A 7 ? DG A 7 . ? 1_555 ? 69 AC8 7 AG F . ? AG A 104 . ? 1_555 ? 70 AC8 7 AG I . ? AG A 107 . ? 1_555 ? 71 AC8 7 AG O . ? AG A 113 . ? 1_555 ? 72 AC8 7 DA B 6 ? DA B 6 . ? 1_555 ? 73 AC8 7 AG R . ? AG B 103 . ? 1_555 ? 74 AC9 8 DC A 4 ? DC A 4 . ? 1_555 ? 75 AC9 8 DG A 5 ? DG A 5 . ? 1_555 ? 76 AC9 8 DA A 6 ? DA A 6 . ? 1_555 ? 77 AC9 8 DC A 8 ? DC A 8 . ? 1_555 ? 78 AC9 8 AG E . ? AG A 103 . ? 1_555 ? 79 AC9 8 AG N . ? AG A 112 . ? 1_555 ? 80 AC9 8 DG B 9 ? DG B 9 . ? 1_555 ? 81 AC9 8 AG S . ? AG B 104 . ? 1_555 ? 82 AD1 8 DA A 2 ? DA A 2 . ? 1_555 ? 83 AD1 8 AG C . ? AG A 101 . ? 1_555 ? 84 AD1 8 AG G . ? AG A 105 . ? 1_555 ? 85 AD1 8 AG M . ? AG A 111 . ? 1_555 ? 86 AD1 8 DC B 1 ? DC B 1 . ? 1_555 ? 87 AD1 8 DC B 3 ? DC B 3 . ? 1_555 ? 88 AD1 8 DG B 9 ? DG B 9 . ? 1_555 ? 89 AD1 8 AG P . ? AG B 101 . ? 1_555 ? 90 AD2 9 DC A 3 ? DC A 3 . ? 1_555 ? 91 AD2 9 DC A 4 ? DC A 4 . ? 1_555 ? 92 AD2 9 AG C . ? AG A 101 . ? 1_555 ? 93 AD2 9 AG D . ? AG A 102 . ? 1_555 ? 94 AD2 9 AG L . ? AG A 110 . ? 1_555 ? 95 AD2 9 AG N . ? AG A 112 . ? 1_555 ? 96 AD2 9 DC B 1 ? DC B 1 . ? 1_555 ? 97 AD2 9 DG B 9 ? DG B 9 . ? 1_555 ? 98 AD2 9 AG P . ? AG B 101 . ? 1_555 ? 99 AD3 10 DC A 4 ? DC A 4 . ? 1_555 ? 100 AD3 10 AG D . ? AG A 102 . ? 1_555 ? 101 AD3 10 AG E . ? AG A 103 . ? 1_555 ? 102 AD3 10 AG K . ? AG A 109 . ? 1_555 ? 103 AD3 10 AG M . ? AG A 111 . ? 1_555 ? 104 AD3 10 DC B 8 ? DC B 8 . ? 1_555 ? 105 AD3 10 DG B 9 ? DG B 9 . ? 1_555 ? 106 AD3 10 AG P . ? AG B 101 . ? 1_555 ? 107 AD3 10 AG Q . ? AG B 102 . ? 1_555 ? 108 AD3 10 AG S . ? AG B 104 . ? 1_555 ? 109 AD4 7 DA A 6 ? DA A 6 . ? 1_555 ? 110 AD4 7 AG F . ? AG A 104 . ? 1_555 ? 111 AD4 7 AG J . ? AG A 108 . ? 1_555 ? 112 AD4 7 DA B 6 ? DA B 6 . ? 1_555 ? 113 AD4 7 DG B 7 ? DG B 7 . ? 1_555 ? 114 AD4 7 AG R . ? AG B 103 . ? 1_555 ? 115 AD4 7 AG S . ? AG B 104 . ? 1_555 ? 116 AD5 9 AG D . ? AG A 102 . ? 1_555 ? 117 AD5 9 AG G . ? AG A 105 . ? 1_555 ? 118 AD5 9 AG H . ? AG A 106 . ? 1_555 ? 119 AD5 9 AG L . ? AG A 110 . ? 1_555 ? 120 AD5 9 AG M . ? AG A 111 . ? 1_555 ? 121 AD5 9 AG N . ? AG A 112 . ? 1_555 ? 122 AD5 9 DC B 4 ? DC B 4 . ? 1_555 ? 123 AD5 9 DG B 9 ? DG B 9 . ? 1_555 ? 124 AD5 9 AG Q . ? AG B 102 . ? 1_555 ? 125 AD6 10 AG E . ? AG A 103 . ? 1_555 ? 126 AD6 10 AG H . ? AG A 106 . ? 1_555 ? 127 AD6 10 AG I . ? AG A 107 . ? 1_555 ? 128 AD6 10 AG N . ? AG A 112 . ? 1_555 ? 129 AD6 10 DC B 4 ? DC B 4 . ? 1_555 ? 130 AD6 10 DC B 8 ? DC B 8 . ? 1_555 ? 131 AD6 10 AG P . ? AG B 101 . ? 1_555 ? 132 AD6 10 AG R . ? AG B 103 . ? 1_555 ? 133 AD6 10 AG S . ? AG B 104 . ? 1_555 ? 134 AD6 10 AG T . ? AG B 105 . ? 1_555 ? 135 AD7 10 AG F . ? AG A 104 . ? 1_555 ? 136 AD7 10 AG I . ? AG A 107 . ? 1_555 ? 137 AD7 10 AG J . ? AG A 108 . ? 1_555 ? 138 AD7 10 AG O . ? AG A 113 . ? 1_555 ? 139 AD7 10 DA B 6 ? DA B 6 . ? 1_555 ? 140 AD7 10 DG B 7 ? DG B 7 . ? 1_555 ? 141 AD7 10 DC B 8 ? DC B 8 . ? 1_555 ? 142 AD7 10 AG Q . ? AG B 102 . ? 1_555 ? 143 AD7 10 AG S . ? AG B 104 . ? 1_555 ? 144 AD7 10 AG T . ? AG B 105 . ? 1_555 ? 145 AD8 10 AG E . ? AG A 103 . ? 1_555 ? 146 AD8 10 AG F . ? AG A 104 . ? 1_555 ? 147 AD8 10 AG I . ? AG A 107 . ? 1_555 ? 148 AD8 10 AG K . ? AG A 109 . ? 1_555 ? 149 AD8 10 AG N . ? AG A 112 . ? 1_555 ? 150 AD8 10 AG O . ? AG A 113 . ? 1_555 ? 151 AD8 10 DG B 7 ? DG B 7 . ? 1_555 ? 152 AD8 10 DC B 8 ? DC B 8 . ? 1_555 ? 153 AD8 10 AG Q . ? AG B 102 . ? 1_555 ? 154 AD8 10 AG R . ? AG B 103 . ? 1_555 ? 155 AD9 9 DG A 7 ? DG A 7 . ? 1_555 ? 156 AD9 9 AG H . ? AG A 106 . ? 1_555 ? 157 AD9 9 AG I . ? AG A 107 . ? 1_555 ? 158 AD9 9 DC B 4 ? DC B 4 . ? 1_555 ? 159 AD9 9 DG B 5 ? DG B 5 . ? 1_555 ? 160 AD9 9 DA B 6 ? DA B 6 . ? 1_555 ? 161 AD9 9 DC B 8 ? DC B 8 . ? 1_555 ? 162 AD9 9 AG Q . ? AG B 102 . ? 1_555 ? 163 AD9 9 AG R . ? AG B 103 . ? 1_555 ? # _atom_sites.entry_id 7BSG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.033465 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029694 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013029 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol AG C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DA 2 2 2 DA DA B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DC 4 4 4 DC DC B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 DG 7 7 7 DG DG B . n B 1 8 DC 8 8 8 DC DC B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DA 10 10 10 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AG 1 101 101 AG AG A . D 2 AG 1 102 102 AG AG A . E 2 AG 1 103 103 AG AG A . F 2 AG 1 104 104 AG AG A . G 2 AG 1 105 105 AG AG A . H 2 AG 1 106 106 AG AG A . I 2 AG 1 107 107 AG AG A . J 2 AG 1 108 108 AG AG A . K 2 AG 1 109 117 AG AG A . L 2 AG 1 110 109 AG AG A . M 2 AG 1 111 110 AG AG A . N 2 AG 1 112 111 AG AG A . O 2 AG 1 113 112 AG AG A . P 2 AG 1 101 113 AG AG B . Q 2 AG 1 102 114 AG AG B . R 2 AG 1 103 115 AG AG B . S 2 AG 1 104 116 AG AG B . T 2 AG 1 105 118 AG AG B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4120 ? 1 MORE -134 ? 1 'SSA (A^2)' 2570 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A DC 1 ? A DC 1 ? 1_555 AG ? C AG . ? A AG 101 ? 1_555 N3 ? A DC 3 ? A DC 3 ? 1_555 95.7 ? 2 N3 ? A DC 1 ? A DC 1 ? 1_555 AG ? G AG . ? A AG 105 ? 1_555 O2 ? B DC 3 ? B DC 3 ? 1_555 75.4 ? 3 N3 ? A DC 1 ? A DC 1 ? 1_555 AG ? G AG . ? A AG 105 ? 1_555 O2 ? B DC 4 ? B DC 4 ? 1_555 99.5 ? 4 O2 ? B DC 3 ? B DC 3 ? 1_555 AG ? G AG . ? A AG 105 ? 1_555 O2 ? B DC 4 ? B DC 4 ? 1_555 85.5 ? 5 N1 ? A DA 2 ? A DA 2 ? 1_555 AG ? L AG . ? A AG 110 ? 1_555 O2 ? B DC 1 ? B DC 1 ? 1_555 86.8 ? 6 N1 ? A DA 2 ? A DA 2 ? 1_555 AG ? L AG . ? A AG 110 ? 1_555 O2 ? B DC 3 ? B DC 3 ? 1_555 85.9 ? 7 O2 ? B DC 1 ? B DC 1 ? 1_555 AG ? L AG . ? A AG 110 ? 1_555 O2 ? B DC 3 ? B DC 3 ? 1_555 136.6 ? 8 N1 ? A DA 2 ? A DA 2 ? 1_555 AG ? L AG . ? A AG 110 ? 1_555 N3 ? B DC 3 ? B DC 3 ? 1_555 98.6 ? 9 O2 ? B DC 1 ? B DC 1 ? 1_555 AG ? L AG . ? A AG 110 ? 1_555 N3 ? B DC 3 ? B DC 3 ? 1_555 84.2 ? 10 O2 ? B DC 3 ? B DC 3 ? 1_555 AG ? L AG . ? A AG 110 ? 1_555 N3 ? B DC 3 ? B DC 3 ? 1_555 54.9 ? 11 O2 ? A DC 3 ? A DC 3 ? 1_555 AG ? M AG . ? A AG 111 ? 1_555 O2 ? A DC 4 ? A DC 4 ? 1_555 80.4 ? 12 O2 ? A DC 3 ? A DC 3 ? 1_555 AG ? M AG . ? A AG 111 ? 1_555 N3 ? B DC 1 ? B DC 1 ? 1_555 75.8 ? 13 O2 ? A DC 4 ? A DC 4 ? 1_555 AG ? M AG . ? A AG 111 ? 1_555 N3 ? B DC 1 ? B DC 1 ? 1_555 96.8 ? 14 N3 ? A DC 4 ? A DC 4 ? 1_555 AG ? D AG . ? A AG 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 86.6 ? 15 O2 ? A DC 4 ? A DC 4 ? 1_555 AG ? N AG . ? A AG 112 ? 1_555 N1 ? B DG 9 ? B DG 9 ? 1_555 72.3 ? 16 OP1 ? A DA 6 ? A DA 6 ? 1_555 AG ? F AG . ? A AG 104 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 108.7 ? 17 N7 ? A DA 6 ? A DA 6 ? 1_555 AG ? J AG . ? A AG 108 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 105.9 ? 18 N7 ? A DA 6 ? A DA 6 ? 1_555 AG ? J AG . ? A AG 108 ? 1_555 OP2 ? B DA 6 ? B DA 6 ? 1_555 101.1 ? 19 O6 ? A DG 7 ? A DG 7 ? 1_555 AG ? J AG . ? A AG 108 ? 1_555 OP2 ? B DA 6 ? B DA 6 ? 1_555 75.0 ? 20 OP2 ? A DA 6 ? A DA 6 ? 1_555 AG ? O AG . ? A AG 113 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 76.5 ? 21 O6 ? A DG 7 ? A DG 7 ? 1_555 AG ? I AG . ? A AG 107 ? 1_555 O2 ? A DC 8 ? A DC 8 ? 1_555 76.0 ? 22 N1 ? A DG 9 ? A DG 9 ? 1_555 AG ? H AG . ? A AG 106 ? 1_555 O2 ? B DC 4 ? B DC 4 ? 1_555 85.8 ? 23 N3 ? B DC 4 ? B DC 4 ? 1_555 AG ? P AG . ? B AG 101 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 94.3 ? 24 OP1 ? B DA 6 ? B DA 6 ? 1_555 AG ? R AG . ? B AG 103 ? 1_555 N7 ? B DG 7 ? B DG 7 ? 1_555 89.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-16 2 'Structure model' 1 1 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' database_2 5 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _pdbx_entry_details.entry_id 7BSG _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 9 ? ? P A DA 10 ? ? 1.535 1.607 -0.072 0.012 Y 2 1 "O3'" B DC 4 ? ? "C3'" B DC 4 ? ? 1.380 1.419 -0.039 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.87 108.30 2.57 0.30 N 2 1 "O5'" A DG 9 ? ? P A DG 9 ? ? OP1 A DG 9 ? ? 118.09 110.70 7.39 1.20 N 3 1 "C3'" B DG 7 ? ? "C2'" B DG 7 ? ? "C1'" B DG 7 ? ? 97.02 102.40 -5.38 0.80 N 4 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.84 108.30 3.54 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DG 5 ? N9 ? A DG 5 N9 2 1 Y 1 A DG 5 ? C8 ? A DG 5 C8 3 1 Y 1 A DG 5 ? N7 ? A DG 5 N7 4 1 Y 1 A DG 5 ? C5 ? A DG 5 C5 5 1 Y 1 A DG 5 ? C6 ? A DG 5 C6 6 1 Y 1 A DG 5 ? O6 ? A DG 5 O6 7 1 Y 1 A DG 5 ? N1 ? A DG 5 N1 8 1 Y 1 A DG 5 ? C2 ? A DG 5 C2 9 1 Y 1 A DG 5 ? N2 ? A DG 5 N2 10 1 Y 1 A DG 5 ? N3 ? A DG 5 N3 11 1 Y 1 A DG 5 ? C4 ? A DG 5 C4 12 1 Y 1 B DA 10 ? N9 ? B DA 10 N9 13 1 Y 1 B DA 10 ? C8 ? B DA 10 C8 14 1 Y 1 B DA 10 ? N7 ? B DA 10 N7 15 1 Y 1 B DA 10 ? C5 ? B DA 10 C5 16 1 Y 1 B DA 10 ? C6 ? B DA 10 C6 17 1 Y 1 B DA 10 ? N6 ? B DA 10 N6 18 1 Y 1 B DA 10 ? N1 ? B DA 10 N1 19 1 Y 1 B DA 10 ? C2 ? B DA 10 C2 20 1 Y 1 B DA 10 ? N3 ? B DA 10 N3 21 1 Y 1 B DA 10 ? C4 ? B DA 10 C4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AG AG AG N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 # _ndb_struct_conf_na.entry_id 7BSG _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 3 1_555 A DA 2 1_555 0.568 -2.660 1.347 22.869 26.500 -127.336 1 B_DC3:DA2_A B 3 ? A 2 ? ? ? 1 A DC 1 1_555 A DC 3 1_555 1.553 -3.384 0.276 -29.303 16.004 -84.211 2 A_DC1:DC3_A A 1 ? A 3 ? ? ? 1 B DC 4 1_555 B DG 9 1_555 1.878 1.595 -1.394 7.153 -34.223 -90.157 3 B_DC4:DG9_B B 4 ? B 9 ? ? ? 1 A DA 6 1_555 B DG 5 1_555 -3.049 3.944 -0.790 19.062 22.956 72.791 4 A_DA6:DG5_B A 6 ? B 5 ? 10 6 1 A DC 4 1_555 B DC 1 1_555 1.236 -3.506 0.006 23.525 27.678 -85.031 5 A_DC4:DC1_B A 4 ? B 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 3 1_555 A DA 2 1_555 A DC 1 1_555 A DC 3 1_555 1.005 2.315 2.619 -2.844 -3.618 73.360 2.025 -0.911 2.484 -3.025 2.379 73.484 1 BA_DC3DC1:DC3DA2_AA B 3 ? A 2 ? A 1 ? A 3 ? 1 A DC 1 1_555 A DC 3 1_555 B DC 4 1_555 B DG 9 1_555 -1.510 -4.023 2.210 30.565 9.423 -77.536 2.847 -0.520 2.943 -7.245 23.502 -82.904 2 AB_DC1DC4:DG9DC3_BA A 1 ? A 3 ? B 4 ? B 9 ? # _pdbx_audit_support.funding_organization 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SILVER ION' _pdbx_entity_nonpoly.comp_id AG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6JR4 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #