HEADER NUCLEAR PROTEIN 07-APR-20 7BUL TITLE SOLUTION STRUCTURE OF THE TANDEM PH AND BSD1 DOMAINS OF TFIIH P62 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BASIC TRANSCRIPTION FACTOR 2 62 KDA SUBUNIT,BTF2 P62,GENERAL COMPND 5 TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1,TFIIH BASAL TRANSCRIPTION COMPND 6 FACTOR COMPLEX P62 SUBUNIT; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: N-TERMINAL THREE RESIDUES GSH ARE ARTIFACTS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GTF2H1, BTF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR FACTOR, GENERAL TRANSCRIPTION FACTOR, NUCLEOTIDE EXCISION KEYWDS 2 REPAIR, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.OKUDA,Y.NISHIMURA REVDAT 4 15-MAY-24 7BUL 1 REMARK REVDAT 3 14-JUN-23 7BUL 1 REMARK REVDAT 2 31-MAR-21 7BUL 1 JRNL REVDAT 1 30-DEC-20 7BUL 0 JRNL AUTH M.OKUDA,T.EKIMOTO,J.I.KURITA,M.IKEGUCHI,Y.NISHIMURA JRNL TITL STRUCTURAL AND DYNAMICAL INSIGHTS INTO THE PH DOMAIN OF P62 JRNL TITL 2 IN HUMAN TFIIH. JRNL REF NUCLEIC ACIDS RES. V. 49 2916 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33211877 JRNL DOI 10.1093/NAR/GKAA1045 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BUL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016518. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 TFIIH P62, 90% H2O/10% D2O; 0.9 REMARK 210 MM [U-99% 13C; U-99% 15N] TFIIH REMARK 210 P62, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D CBCANH; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HBHA(CO)NH; 3D REMARK 210 C(CO)NH; 3D HN(CO)HB; 3D HNHB; REMARK 210 3D HN(CO)CG; 3D HNCG; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRVIEW, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG2 ARG A 16 HB3 ASP A 21 1.26 REMARK 500 HZ2 LYS A 51 OE2 GLU A 112 1.54 REMARK 500 HZ3 LYS A 93 OD2 ASP A 94 1.56 REMARK 500 HZ1 LYS A 109 OE2 GLU A 113 1.57 REMARK 500 H ALA A 23 O ALA A 34 1.57 REMARK 500 OE1 GLU A 6 HH21 ARG A 30 1.58 REMARK 500 HZ3 LYS A 14 OE1 GLU A 82 1.59 REMARK 500 OE1 GLU A 113 HH21 ARG A 116 1.59 REMARK 500 OE1 GLU A 29 HZ1 LYS A 102 1.59 REMARK 500 HZ1 LYS A 13 OE1 GLU A 36 1.60 REMARK 500 O LYS A 54 H GLN A 66 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 82 -18.75 -42.98 REMARK 500 1 LYS A 104 103.90 -58.22 REMARK 500 1 LEU A 131 -63.51 -90.01 REMARK 500 2 SER A 4 49.36 -78.66 REMARK 500 2 GLU A 6 90.56 -66.01 REMARK 500 2 ALA A 61 30.09 -85.84 REMARK 500 2 GLU A 82 -13.11 -46.94 REMARK 500 2 ARG A 105 96.61 -64.62 REMARK 500 2 ALA A 107 91.25 -175.63 REMARK 500 2 ASN A 108 72.83 -115.76 REMARK 500 2 ARG A 146 -45.69 -135.35 REMARK 500 2 ASP A 153 -69.21 -97.41 REMARK 500 3 THR A 3 -9.89 -156.44 REMARK 500 3 SER A 5 96.93 -69.44 REMARK 500 3 GLU A 6 90.98 -48.43 REMARK 500 3 GLU A 82 -19.27 -42.42 REMARK 500 3 VAL A 149 109.34 -162.34 REMARK 500 3 ASP A 153 -69.78 -97.12 REMARK 500 4 GLU A 6 90.81 -66.97 REMARK 500 4 LYS A 14 64.71 60.13 REMARK 500 4 LYS A 19 -16.34 86.84 REMARK 500 4 SER A 80 47.61 -101.91 REMARK 500 4 ASN A 81 75.89 -113.39 REMARK 500 4 GLU A 82 -17.34 -41.09 REMARK 500 4 VAL A 149 109.10 -162.55 REMARK 500 5 SER A 5 20.48 -167.86 REMARK 500 5 ARG A 30 -176.42 -170.65 REMARK 500 5 ASP A 73 -169.16 -101.84 REMARK 500 5 SER A 80 46.72 -102.11 REMARK 500 5 ASN A 81 76.61 -113.45 REMARK 500 5 VAL A 149 109.26 -160.84 REMARK 500 6 SER A 5 14.91 -168.93 REMARK 500 6 ASP A 73 -169.92 -102.85 REMARK 500 6 ARG A 105 89.78 -67.74 REMARK 500 6 VAL A 149 109.30 -166.26 REMARK 500 7 ALA A 2 -82.81 67.93 REMARK 500 7 SER A 4 58.50 -105.27 REMARK 500 7 ALA A 61 30.07 -85.92 REMARK 500 7 ASP A 73 -169.51 -103.09 REMARK 500 7 LEU A 131 -63.50 -90.01 REMARK 500 7 VAL A 149 109.99 -165.07 REMARK 500 8 ALA A 2 29.78 171.19 REMARK 500 8 GLU A 6 102.33 -48.80 REMARK 500 8 GLU A 58 161.17 -48.86 REMARK 500 8 GLU A 82 -19.68 -42.64 REMARK 500 8 ALA A 107 90.95 -69.42 REMARK 500 8 VAL A 149 110.30 -163.18 REMARK 500 9 ALA A 2 -140.66 -175.05 REMARK 500 9 THR A 3 39.36 -93.10 REMARK 500 9 ALA A 107 109.14 -49.08 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36340 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE TANDEM PH AND BSD1 DOMAINS OF TFIIH P62 DBREF 7BUL A 1 158 UNP P32780 TF2H1_HUMAN 1 158 SEQADV 7BUL GLY A -2 UNP P32780 EXPRESSION TAG SEQADV 7BUL SER A -1 UNP P32780 EXPRESSION TAG SEQADV 7BUL HIS A 0 UNP P32780 EXPRESSION TAG SEQRES 1 A 161 GLY SER HIS MET ALA THR SER SER GLU GLU VAL LEU LEU SEQRES 2 A 161 ILE VAL LYS LYS VAL ARG GLN LYS LYS GLN ASP GLY ALA SEQRES 3 A 161 LEU TYR LEU MET ALA GLU ARG ILE ALA TRP ALA PRO GLU SEQRES 4 A 161 GLY LYS ASP ARG PHE THR ILE SER HIS MET TYR ALA ASP SEQRES 5 A 161 ILE LYS CYS GLN LYS ILE SER PRO GLU GLY LYS ALA LYS SEQRES 6 A 161 ILE GLN LEU GLN LEU VAL LEU HIS ALA GLY ASP THR THR SEQRES 7 A 161 ASN PHE HIS PHE SER ASN GLU SER THR ALA VAL LYS GLU SEQRES 8 A 161 ARG ASP ALA VAL LYS ASP LEU LEU GLN GLN LEU LEU PRO SEQRES 9 A 161 LYS PHE LYS ARG LYS ALA ASN LYS GLU LEU GLU GLU LYS SEQRES 10 A 161 ASN ARG MET LEU GLN GLU ASP PRO VAL LEU PHE GLN LEU SEQRES 11 A 161 TYR LYS ASP LEU VAL VAL SER GLN VAL ILE SER ALA GLU SEQRES 12 A 161 GLU PHE TRP ALA ASN ARG LEU ASN VAL ASN ALA THR ASP SEQRES 13 A 161 SER SER SER THR SER HELIX 1 AA1 THR A 84 LEU A 100 1 17 HELIX 2 AA2 ASN A 108 ASP A 121 1 14 HELIX 3 AA3 ASP A 121 VAL A 132 1 12 HELIX 4 AA4 SER A 138 ASN A 148 1 11 HELIX 5 AA5 ALA A 151 SER A 156 1 6 SHEET 1 AA1 7 ILE A 43 MET A 46 0 SHEET 2 AA1 7 ARG A 30 PRO A 35 -1 N ILE A 31 O HIS A 45 SHEET 3 AA1 7 GLN A 20 MET A 27 -1 N ALA A 23 O ALA A 34 SHEET 4 AA1 7 VAL A 8 GLN A 17 -1 N GLN A 17 O GLN A 20 SHEET 5 AA1 7 ASP A 73 PHE A 79 -1 O HIS A 78 N ARG A 16 SHEET 6 AA1 7 ILE A 63 LEU A 69 -1 N ILE A 63 O PHE A 79 SHEET 7 AA1 7 ILE A 50 ILE A 55 -1 N LYS A 54 O GLN A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1