HEADER SUGAR BINDING PROTEIN 11-APR-20 7BVT TITLE CRYSTAL STRUCTURE OF CYCLIC ALPHA-MALTOSYL-1,6-MALTOSE BINDING PROTEIN TITLE 2 FROM ARTHROBACTER GLOBIFORMIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL SUGAR ABC-TRANSPORTER SUGAR BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUBSTRATE BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER GLOBIFORMIS; SOURCE 3 ORGANISM_TAXID: 1665; SOURCE 4 GENE: CMMC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS SUBSTRATE-BINDING PROTEIN, ABC TRANSPORTER, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.KOHNO,T.ARAKAWA,T.MORI,T.NISHIMOTO,S.FUSHINOBU REVDAT 2 29-NOV-23 7BVT 1 REMARK REVDAT 1 02-DEC-20 7BVT 0 JRNL AUTH M.KOHNO,T.ARAKAWA,N.SUNAGAWA,T.MORI,K.IGARASHI,T.NISHIMOTO, JRNL AUTH 2 S.FUSHINOBU JRNL TITL MOLECULAR ANALYSIS OF CYCLIC JRNL TITL 2 ALPHA-MALTOSYL-(1→6)-MALTOSE BINDING PROTEIN IN THE JRNL TITL 3 BACTERIAL METABOLIC PATHWAY. JRNL REF PLOS ONE V. 15 41912 2020 JRNL REFN ESSN 1932-6203 JRNL PMID 33211750 JRNL DOI 10.1371/JOURNAL.PONE.0241912 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.MORI,T.NISHIMOTO,T.OKURA,H.CHAEN,S.FUKUDA REMARK 1 TITL CLONING, SEQUENCING AND EXPRESSION OF THE GENES ENCODING REMARK 1 TITL 2 CYCLIC ALPHA-MALTOSYL-(1->6)-MALTOSE HYDROLASE AND REMARK 1 TITL 3 ALPHA-GLUCOSIDASE FROM AN ARTHROBACTER GLOBIFORMIS STRAIN REMARK 1 REF JOURNAL OF APPLIED V. 58 39 2011 REMARK 1 REF 2 GLYCOSCIENCE REMARK 1 REFN ISSN 1880-7291 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 65458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3434 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4564 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 266 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2955 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.748 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3067 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2617 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4212 ; 1.795 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6118 ; 1.618 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 6.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;37.379 ;25.933 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;13.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;10.133 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3515 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 592 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7BVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 46.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 1.79400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 5CI5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL (PH 8.5), 2.0 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.86133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.72267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.79200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 134.65333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.93067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.86133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 107.72267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 134.65333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.79200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 26.93067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 LEU A 19 REMARK 465 VAL A 20 REMARK 465 PRO A 21 REMARK 465 ARG A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 HIS A 25 REMARK 465 MET A 26 REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 ASP A 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 412 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 217 -68.70 -90.43 REMARK 500 ASN A 309 -123.22 -126.20 REMARK 500 GLU A 360 57.10 -144.68 REMARK 500 ASN A 378 37.00 -90.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 7BVT A 27 421 UNP D2YYD8 D2YYD8_ARTGO 27 421 SEQADV 7BVT MET A 6 UNP D2YYD8 INITIATING METHIONINE SEQADV 7BVT GLY A 7 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT SER A 8 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT SER A 9 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT HIS A 10 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT HIS A 11 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT HIS A 12 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT HIS A 13 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT HIS A 14 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT HIS A 15 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT SER A 16 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT SER A 17 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT GLY A 18 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT LEU A 19 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT VAL A 20 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT PRO A 21 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT ARG A 22 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT GLY A 23 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT SER A 24 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT HIS A 25 UNP D2YYD8 EXPRESSION TAG SEQADV 7BVT MET A 26 UNP D2YYD8 EXPRESSION TAG SEQRES 1 A 416 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 416 LEU VAL PRO ARG GLY SER HIS MET ALA PRO GLY ASP GLY SEQRES 3 A 416 PRO VAL GLU VAL THR VAL TRP HIS TYR TRP ASP GLY THR SEQRES 4 A 416 ASN ALA ASP ALA PHE ASP ALA MET VAL ASP THR TYR ASN SEQRES 5 A 416 ALA SER GLN SER ASP VAL ARG ILE SER ALA SER ASN VAL SEQRES 6 A 416 PRO ASN SER ASP PHE LEU THR LYS LEU ARG ALA SER ALA SEQRES 7 A 416 THR SER ASP THR LEU PRO ASP ILE ALA ILE GLY ASP LEU SEQRES 8 A 416 VAL TRP VAL PRO GLN ILE ALA ASP ILE GLY THR LEU ALA SEQRES 9 A 416 ASP LEU ASN GLY ARG ILE PRO ASP ASP THR LEU THR ASP SEQRES 10 A 416 VAL ASN ASP ALA LEU THR SER PHE GLY THR ILE ASP GLY SEQRES 11 A 416 LYS GLN VAL SER VAL PRO VAL SER ALA ASN ASN LEU GLY SEQRES 12 A 416 TYR MET TYR ASN LYS THR LEU PHE ALA GLU ALA GLY LEU SEQRES 13 A 416 ASP PRO GLU ASN PRO PRO THR THR TRP ASP GLU LEU LYS SEQRES 14 A 416 ALA ALA GLY GLN THR ILE LEU ASP GLU THR GLY LYS PRO SEQRES 15 A 416 GLY TYR ASP LEU TYR THR GLN ALA GLY ASP SER GLY GLU SEQRES 16 A 416 GLY LEU THR TRP ASN PHE GLN VAL ASN LEU TRP GLN ALA SEQRES 17 A 416 GLY GLY ASP PHE LEU THR ALA ASP ASN SER ALA ALA ALA SEQRES 18 A 416 PHE ASN THR PRO GLU GLY ALA GLU ALA LEU GLN TYR TRP SEQRES 19 A 416 VAL ASP LEU ILE ASP SER GLY VAL SER PRO TYR ALA LYS SEQRES 20 A 416 TRP GLY GLU PHE GLU LYS GLY GLN GLY GLY SER ALA GLN SEQRES 21 A 416 GLU GLY SER TRP MET VAL GLY ILE TRP ALA ALA ASP PRO SEQRES 22 A 416 PRO PHE GLU PHE GLY THR ALA GLN VAL PRO TYR PRO SER SEQRES 23 A 416 ASP GLY GLU PRO ALA THR ASN LEU GLY GLY GLU GLN ALA SEQRES 24 A 416 MET VAL PHE GLU ASN SER ASP ALA GLU ASP ASP ALA ALA SEQRES 25 A 416 ALA ASP PHE LEU SER TRP PHE LEU GLU PRO ASP GLN VAL SEQRES 26 A 416 THR GLU TRP SER LYS GLU THR GLY MET LEU PRO VAL LEU SEQRES 27 A 416 ASP SER VAL ALA THR GLY SER ALA TYR LEU GLU TRP VAL SEQRES 28 A 416 GLU SER THR GLU PRO ARG LEU LEU PRO TYR VAL GLU GLN SEQRES 29 A 416 MET ALA ASP ALA HIS ALA ARG PRO ASN THR ALA LEU TYR SEQRES 30 A 416 PRO THR VAL SER LEU ALA PHE ALA GLN GLU ILE GLU LYS SEQRES 31 A 416 ALA LEU ALA GLY GLU ALA SER VAL ASP ASP ALA LEU ASP SEQRES 32 A 416 ALA ALA GLU GLN ALA VAL ASN ALA VAL LEU LYS ASN GLY HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 3(C6 H12 O6) FORMUL 3 HOH *381(H2 O) HELIX 1 AA1 ASP A 42 SER A 59 1 18 HELIX 2 AA2 PRO A 71 SER A 73 5 3 HELIX 3 AA3 ASP A 74 ASP A 86 1 13 HELIX 4 AA4 TRP A 98 GLY A 106 1 9 HELIX 5 AA5 PRO A 116 VAL A 123 1 8 HELIX 6 AA6 ASN A 124 GLY A 131 1 8 HELIX 7 AA7 LYS A 153 ALA A 159 1 7 HELIX 8 AA8 THR A 169 GLY A 185 1 17 HELIX 9 AA9 GLY A 199 ALA A 213 1 15 HELIX 10 AB1 THR A 229 SER A 245 1 17 HELIX 11 AB2 SER A 268 ASP A 277 1 10 HELIX 12 AB3 SER A 310 LEU A 325 1 16 HELIX 13 AB4 GLU A 326 GLY A 338 1 13 HELIX 14 AB5 LEU A 343 THR A 348 1 6 HELIX 15 AB6 GLY A 349 GLU A 360 1 12 HELIX 16 AB7 LEU A 363 GLN A 369 1 7 HELIX 17 AB8 LEU A 381 ALA A 398 1 18 HELIX 18 AB9 SER A 402 GLY A 421 1 20 SHEET 1 AA1 5 VAL A 63 ASN A 69 0 SHEET 2 AA1 5 VAL A 33 HIS A 39 1 N VAL A 35 O ARG A 64 SHEET 3 AA1 5 ILE A 91 ASP A 95 1 O ILE A 93 N TRP A 38 SHEET 4 AA1 5 GLU A 302 VAL A 306 -1 O GLN A 303 N GLY A 94 SHEET 5 AA1 5 VAL A 140 PRO A 141 -1 N VAL A 140 O ALA A 304 SHEET 1 AA2 2 THR A 132 ILE A 133 0 SHEET 2 AA2 2 LYS A 136 GLN A 137 -1 O LYS A 136 N ILE A 133 SHEET 1 AA3 3 SER A 263 GLY A 267 0 SHEET 2 AA3 3 ASN A 145 ASN A 152 -1 N MET A 150 O ALA A 264 SHEET 3 AA3 3 PHE A 282 ALA A 285 -1 O GLY A 283 N TYR A 151 SHEET 1 AA4 4 SER A 263 GLY A 267 0 SHEET 2 AA4 4 ASN A 145 ASN A 152 -1 N MET A 150 O ALA A 264 SHEET 3 AA4 4 THR A 297 GLY A 300 -1 O GLY A 300 N ASN A 145 SHEET 4 AA4 4 ALA A 373 HIS A 374 1 O HIS A 374 N THR A 297 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.44 LINK O6 GLC B 2 C1 GLC B 3 1555 1555 1.47 CRYST1 92.077 92.077 161.584 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010860 0.006270 0.000000 0.00000 SCALE2 0.000000 0.012541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006189 0.00000