HEADER HYDROLASE 11-APR-20 7BVU TITLE CRYSTAL STRUCTURE OF S. THERMOPHILUS NFEOB E66A.E67A BOUND TO TITLE 2 GDP.ALF4- COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROUS IRON TRANSPORT PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GTP BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS (STRAIN ATCC BAA-250 SOURCE 3 / LMG 18311); SOURCE 4 ORGANISM_TAXID: 264199; SOURCE 5 STRAIN: ATCC BAA-250 / LMG 18311; SOURCE 6 GENE: FEOB, STU0608; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS HAS-GTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BATRA,B.PRAKASH REVDAT 2 29-NOV-23 7BVU 1 REMARK REVDAT 1 14-APR-21 7BVU 0 JRNL AUTH S.BATRA,B.PRAKASH JRNL TITL CRYSTAL STRUCTURE OF S. THERMOPHILUS NFEOB E66A.E67A BOUND JRNL TITL 2 TO GDP.ALF4- JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 18673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8300 - 4.5384 1.00 3333 171 0.1780 0.1893 REMARK 3 2 4.5384 - 3.6043 0.95 3039 162 0.1622 0.2136 REMARK 3 3 3.6043 - 3.1492 0.88 2773 160 0.1952 0.2338 REMARK 3 4 3.1492 - 2.8615 0.91 2849 120 0.2245 0.2913 REMARK 3 5 2.8615 - 2.6566 0.92 2883 134 0.2270 0.2979 REMARK 3 6 2.6566 - 2.5000 0.94 2898 151 0.2309 0.2814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 46 OR REMARK 3 (RESID 47 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 48 REMARK 3 THROUGH 89 OR (RESID 90 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG )) OR RESID 91 OR (RESID 92 REMARK 3 THROUGH 93 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 94 REMARK 3 THROUGH 113 OR RESID 115 THROUGH 124 OR REMARK 3 RESID 126 THROUGH 153 OR (RESID 154 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR (RESID 155 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD )) OR RESID REMARK 3 156 THROUGH 159 OR (RESID 169 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG )) OR RESID 170 THROUGH 184 OR REMARK 3 (RESID 185 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 186 REMARK 3 THROUGH 194 OR RESID 196 THROUGH 251 OR REMARK 3 (RESID 252 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 253 REMARK 3 THROUGH 254 OR RESID 301 THROUGH 405)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 62 OR REMARK 3 (RESID 63 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 64 THROUGH 113 OR RESID 115 THROUGH REMARK 3 120 OR (RESID 121 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 122 OR (RESID 123 THROUGH 124 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 126 THROUGH 128 OR REMARK 3 (RESID 129 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 130 REMARK 3 THROUGH 194 OR RESID 196 THROUGH 214 OR REMARK 3 (RESID 215 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O )) OR RESID 216 THROUGH 217 REMARK 3 OR (RESID 218 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 219 THROUGH 221 OR (RESID 222 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 223 THROUGH 224 OR (RESID 225 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 226 THROUGH 237 REMARK 3 OR (RESID 238 THROUGH 239 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 240 THROUGH 254 OR RESID 301 REMARK 3 THROUGH 405)) REMARK 3 ATOM PAIRS NUMBER : 1468 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18799 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.27300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.5.04 REMARK 200 STARTING MODEL: 3SS8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5 MG/ML PROTEIN WITH EQUAL VOLUME OF REMARK 280 100 MM TRIS-8.0, 400 MM AMMONIUM CHLORIDE, 26 % PEG 6000, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.30950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.97850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.20100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.97850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.30950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.20100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ALA A -4 REMARK 465 MET A -3 REMARK 465 ALA A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 SER A 162 REMARK 465 THR A 163 REMARK 465 VAL A 164 REMARK 465 GLY A 165 REMARK 465 ASP A 166 REMARK 465 GLN A 256 REMARK 465 MET A 257 REMARK 465 ALA A 258 REMARK 465 GLU A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 THR A 262 REMARK 465 GLU A 263 REMARK 465 ASP A 264 REMARK 465 PHE A 265 REMARK 465 ALA A 266 REMARK 465 LEU A 267 REMARK 465 THR A 268 REMARK 465 LEU A 269 REMARK 465 SER A 270 REMARK 465 GLY B -5 REMARK 465 ALA B -4 REMARK 465 MET B -3 REMARK 465 ALA B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 THR B 160 REMARK 465 THR B 161 REMARK 465 SER B 162 REMARK 465 THR B 163 REMARK 465 VAL B 164 REMARK 465 GLY B 165 REMARK 465 ASP B 166 REMARK 465 LEU B 167 REMARK 465 ALA B 168 REMARK 465 CYS B 255 REMARK 465 GLN B 256 REMARK 465 MET B 257 REMARK 465 ALA B 258 REMARK 465 GLU B 259 REMARK 465 SER B 260 REMARK 465 HIS B 261 REMARK 465 THR B 262 REMARK 465 GLU B 263 REMARK 465 ASP B 264 REMARK 465 PHE B 265 REMARK 465 ALA B 266 REMARK 465 LEU B 267 REMARK 465 THR B 268 REMARK 465 LEU B 269 REMARK 465 SER B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CE NZ REMARK 470 LYS A 47 CE NZ REMARK 470 TYR A 63 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 121 CG CD OE1 NE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ILE A 125 CG2 CD1 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LEU A 167 CG CD1 CD2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 470 ASP A 215 CB CG OD1 OD2 REMARK 470 GLN A 218 CG CD OE1 NE2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 GLU A 252 CD OE1 OE2 REMARK 470 VAL A 254 CG1 CG2 REMARK 470 LYS B 45 CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 ASN B 90 OD1 ND2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 123 CD CE NZ REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LYS B 154 CD CE NZ REMARK 470 LYS B 155 CE NZ REMARK 470 PHE B 169 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 GLN B 193 CG CD OE1 NE2 REMARK 470 LYS B 222 CD CE NZ REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 VAL B 254 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 60 1.27 -69.03 REMARK 500 PRO A 170 109.45 -56.29 REMARK 500 ASP A 215 60.51 61.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 509 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 510 DISTANCE = 6.70 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 305 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 11 OD1 REMARK 620 2 GLY A 29 O 68.7 REMARK 620 3 TRP A 31 O 71.9 77.2 REMARK 620 4 GDP A 302 O1B 95.5 137.4 137.0 REMARK 620 5 GDP A 302 O1A 103.0 73.6 150.1 71.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 15 OG1 REMARK 620 2 THR A 35 OG1 87.0 REMARK 620 3 GDP A 302 O3B 84.8 171.1 REMARK 620 4 HOH A 416 O 81.7 98.7 83.7 REMARK 620 5 HOH A 438 O 84.3 92.0 83.6 161.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 305 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 11 OD1 REMARK 620 2 GLY B 29 O 70.5 REMARK 620 3 TRP B 31 O 73.3 78.0 REMARK 620 4 GDP B 302 O3B 95.6 135.6 139.8 REMARK 620 5 GDP B 302 O2A 103.0 71.5 148.4 71.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 15 OG1 REMARK 620 2 THR B 35 OG1 82.1 REMARK 620 3 GDP B 302 O2B 90.3 166.2 REMARK 620 4 HOH B 424 O 84.0 85.0 82.7 REMARK 620 5 HOH B 426 O 86.8 99.7 91.3 169.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALF A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALF B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 306 DBREF 7BVU A 1 270 UNP Q5M586 Q5M586_STRT2 1 270 DBREF 7BVU B 1 270 UNP Q5M586 Q5M586_STRT2 1 270 SEQADV 7BVU GLY A -5 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU ALA A -4 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU MET A -3 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU ALA A -2 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU SER A -1 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU HIS A 0 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU ALA A 66 UNP Q5M586 GLU 66 ENGINEERED MUTATION SEQADV 7BVU ALA A 67 UNP Q5M586 GLU 67 ENGINEERED MUTATION SEQADV 7BVU GLY B -5 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU ALA B -4 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU MET B -3 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU ALA B -2 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU SER B -1 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU HIS B 0 UNP Q5M586 EXPRESSION TAG SEQADV 7BVU ALA B 66 UNP Q5M586 GLU 66 ENGINEERED MUTATION SEQADV 7BVU ALA B 67 UNP Q5M586 GLU 67 ENGINEERED MUTATION SEQRES 1 A 276 GLY ALA MET ALA SER HIS MET THR GLU ILE ALA LEU ILE SEQRES 2 A 276 GLY ASN PRO ASN SER GLY LYS THR SER LEU PHE ASN LEU SEQRES 3 A 276 ILE THR GLY HIS ASN GLN ARG VAL GLY ASN TRP PRO GLY SEQRES 4 A 276 VAL THR VAL GLU ARG LYS SER GLY LEU VAL LYS LYS ASN SEQRES 5 A 276 LYS ASP LEU GLU ILE GLN ASP LEU PRO GLY ILE TYR SER SEQRES 6 A 276 MET SER PRO TYR SER PRO ALA ALA LYS VAL ALA ARG ASP SEQRES 7 A 276 TYR LEU LEU SER GLN ARG ALA ASP SER ILE LEU ASN VAL SEQRES 8 A 276 VAL ASP ALA THR ASN LEU GLU ARG ASN LEU TYR LEU THR SEQRES 9 A 276 THR GLN LEU ILE GLU THR GLY ILE PRO VAL THR ILE ALA SEQRES 10 A 276 LEU ASN MET ILE ASP VAL LEU ASP GLY GLN GLY LYS LYS SEQRES 11 A 276 ILE ASN VAL ASP LYS LEU SER TYR HIS LEU GLY VAL PRO SEQRES 12 A 276 VAL VAL ALA THR SER ALA LEU LYS GLN THR GLY VAL ASP SEQRES 13 A 276 GLN VAL VAL LYS LYS ALA ALA HIS THR THR THR SER THR SEQRES 14 A 276 VAL GLY ASP LEU ALA PHE PRO ILE TYR ASP ASP ARG LEU SEQRES 15 A 276 GLU ALA ALA ILE SER GLN ILE LEU GLU VAL LEU GLY ASN SEQRES 16 A 276 SER VAL PRO GLN ARG SER ALA ARG PHE TYR ALA ILE LYS SEQRES 17 A 276 LEU PHE GLU GLN ASP SER LEU VAL GLU ALA GLU LEU ASP SEQRES 18 A 276 LEU SER GLN PHE GLN ARG LYS GLU ILE GLU ASP ILE ILE SEQRES 19 A 276 ARG ILE THR GLU GLU ILE PHE THR GLU ASP ALA GLU SER SEQRES 20 A 276 ILE VAL ILE ASN GLU ARG TYR ALA PHE ILE GLU ARG VAL SEQRES 21 A 276 CYS GLN MET ALA GLU SER HIS THR GLU ASP PHE ALA LEU SEQRES 22 A 276 THR LEU SER SEQRES 1 B 276 GLY ALA MET ALA SER HIS MET THR GLU ILE ALA LEU ILE SEQRES 2 B 276 GLY ASN PRO ASN SER GLY LYS THR SER LEU PHE ASN LEU SEQRES 3 B 276 ILE THR GLY HIS ASN GLN ARG VAL GLY ASN TRP PRO GLY SEQRES 4 B 276 VAL THR VAL GLU ARG LYS SER GLY LEU VAL LYS LYS ASN SEQRES 5 B 276 LYS ASP LEU GLU ILE GLN ASP LEU PRO GLY ILE TYR SER SEQRES 6 B 276 MET SER PRO TYR SER PRO ALA ALA LYS VAL ALA ARG ASP SEQRES 7 B 276 TYR LEU LEU SER GLN ARG ALA ASP SER ILE LEU ASN VAL SEQRES 8 B 276 VAL ASP ALA THR ASN LEU GLU ARG ASN LEU TYR LEU THR SEQRES 9 B 276 THR GLN LEU ILE GLU THR GLY ILE PRO VAL THR ILE ALA SEQRES 10 B 276 LEU ASN MET ILE ASP VAL LEU ASP GLY GLN GLY LYS LYS SEQRES 11 B 276 ILE ASN VAL ASP LYS LEU SER TYR HIS LEU GLY VAL PRO SEQRES 12 B 276 VAL VAL ALA THR SER ALA LEU LYS GLN THR GLY VAL ASP SEQRES 13 B 276 GLN VAL VAL LYS LYS ALA ALA HIS THR THR THR SER THR SEQRES 14 B 276 VAL GLY ASP LEU ALA PHE PRO ILE TYR ASP ASP ARG LEU SEQRES 15 B 276 GLU ALA ALA ILE SER GLN ILE LEU GLU VAL LEU GLY ASN SEQRES 16 B 276 SER VAL PRO GLN ARG SER ALA ARG PHE TYR ALA ILE LYS SEQRES 17 B 276 LEU PHE GLU GLN ASP SER LEU VAL GLU ALA GLU LEU ASP SEQRES 18 B 276 LEU SER GLN PHE GLN ARG LYS GLU ILE GLU ASP ILE ILE SEQRES 19 B 276 ARG ILE THR GLU GLU ILE PHE THR GLU ASP ALA GLU SER SEQRES 20 B 276 ILE VAL ILE ASN GLU ARG TYR ALA PHE ILE GLU ARG VAL SEQRES 21 B 276 CYS GLN MET ALA GLU SER HIS THR GLU ASP PHE ALA LEU SEQRES 22 B 276 THR LEU SER HET EDO A 301 4 HET GDP A 302 28 HET ALF A 303 5 HET MG A 304 1 HET K A 305 1 HET CL A 306 1 HET EDO B 301 4 HET GDP B 302 28 HET ALF B 303 5 HET MG B 304 1 HET K B 305 1 HET CL B 306 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 ALF 2(AL F4 1-) FORMUL 6 MG 2(MG 2+) FORMUL 7 K 2(K 1+) FORMUL 8 CL 2(CL 1-) FORMUL 15 HOH *202(H2 O) HELIX 1 AA1 GLY A 13 GLY A 23 1 11 HELIX 2 AA2 SER A 64 SER A 76 1 13 HELIX 3 AA3 ASN A 90 THR A 104 1 15 HELIX 4 AA4 MET A 114 GLN A 121 1 8 HELIX 5 AA5 ASN A 126 GLY A 135 1 10 HELIX 6 AA6 GLY A 148 THR A 159 1 12 HELIX 7 AA7 ASP A 173 GLY A 188 1 16 HELIX 8 AA8 ASN A 189 VAL A 191 5 3 HELIX 9 AA9 PRO A 192 ARG A 194 5 3 HELIX 10 AB1 SER A 195 GLU A 205 1 11 HELIX 11 AB2 ASP A 207 ASP A 215 1 9 HELIX 12 AB3 SER A 217 THR A 236 1 20 HELIX 13 AB4 ASP A 238 ARG A 253 1 16 HELIX 14 AB5 GLY B 13 GLY B 23 1 11 HELIX 15 AB6 SER B 64 SER B 76 1 13 HELIX 16 AB7 ASN B 90 THR B 104 1 15 HELIX 17 AB8 MET B 114 GLN B 121 1 8 HELIX 18 AB9 ASN B 126 GLY B 135 1 10 HELIX 19 AC1 GLY B 148 THR B 159 1 12 HELIX 20 AC2 ASP B 173 GLY B 188 1 16 HELIX 21 AC3 PRO B 192 ARG B 194 5 3 HELIX 22 AC4 SER B 195 GLU B 205 1 11 HELIX 23 AC5 ASP B 207 ASP B 215 1 9 HELIX 24 AC6 SER B 217 THR B 236 1 20 HELIX 25 AC7 ASP B 238 ARG B 253 1 16 SHEET 1 AA1 6 LYS A 39 VAL A 43 0 SHEET 2 AA1 6 ASN A 46 ASP A 53 -1 O ASP A 53 N LYS A 39 SHEET 3 AA1 6 THR A 2 GLY A 8 1 N ILE A 4 O GLU A 50 SHEET 4 AA1 6 SER A 81 ASP A 87 1 O VAL A 85 N ILE A 7 SHEET 5 AA1 6 VAL A 108 ASN A 113 1 O ALA A 111 N ASN A 84 SHEET 6 AA1 6 VAL A 138 ALA A 140 1 O VAL A 139 N LEU A 112 SHEET 1 AA2 6 LYS B 39 VAL B 43 0 SHEET 2 AA2 6 ASN B 46 ASP B 53 -1 O ASP B 53 N LYS B 39 SHEET 3 AA2 6 THR B 2 GLY B 8 1 N THR B 2 O GLU B 50 SHEET 4 AA2 6 SER B 81 ASP B 87 1 O LEU B 83 N ALA B 5 SHEET 5 AA2 6 VAL B 108 ASN B 113 1 O ALA B 111 N ASN B 84 SHEET 6 AA2 6 VAL B 138 ALA B 140 1 O VAL B 139 N ILE B 110 LINK OD1 ASN A 11 K K A 305 1555 1555 2.85 LINK OG1 THR A 15 MG MG A 304 1555 1555 2.05 LINK O GLY A 29 K K A 305 1555 1555 2.83 LINK O TRP A 31 K K A 305 1555 1555 2.81 LINK OG1 THR A 35 MG MG A 304 1555 1555 2.07 LINK O3B GDP A 302 MG MG A 304 1555 1555 2.28 LINK O1B GDP A 302 K K A 305 1555 1555 2.83 LINK O1A GDP A 302 K K A 305 1555 1555 2.75 LINK MG MG A 304 O HOH A 416 1555 1555 2.28 LINK MG MG A 304 O HOH A 438 1555 1555 2.32 LINK OD1 ASN B 11 K K B 305 1555 1555 2.85 LINK OG1 THR B 15 MG MG B 304 1555 1555 2.05 LINK O GLY B 29 K K B 305 1555 1555 2.91 LINK O TRP B 31 K K B 305 1555 1555 2.76 LINK OG1 THR B 35 MG MG B 304 1555 1555 2.41 LINK O2B GDP B 302 MG MG B 304 1555 1555 2.11 LINK O3B GDP B 302 K K B 305 1555 1555 2.91 LINK O2A GDP B 302 K K B 305 1555 1555 2.73 LINK MG MG B 304 O HOH B 424 1555 1555 2.32 LINK MG MG B 304 O HOH B 426 1555 1555 2.10 SITE 1 AC1 2 LEU A 75 PRO A 192 SITE 1 AC2 22 ASN A 11 SER A 12 GLY A 13 LYS A 14 SITE 2 AC2 22 THR A 15 SER A 16 GLY A 29 ASN A 30 SITE 3 AC2 22 ASN A 113 MET A 114 ASP A 116 VAL A 117 SITE 4 AC2 22 SER A 142 ALA A 143 LEU A 144 ALF A 303 SITE 5 AC2 22 MG A 304 K A 305 HOH A 416 HOH A 424 SITE 6 AC2 22 HOH A 436 HOH A 438 SITE 1 AC3 13 PRO A 10 ASN A 11 LYS A 14 PRO A 32 SITE 2 AC3 13 GLY A 33 VAL A 34 THR A 35 GLY A 56 SITE 3 AC3 13 GDP A 302 MG A 304 K A 305 HOH A 416 SITE 4 AC3 13 HOH A 420 SITE 1 AC4 6 THR A 15 THR A 35 GDP A 302 ALF A 303 SITE 2 AC4 6 HOH A 416 HOH A 438 SITE 1 AC5 6 ASN A 11 GLY A 29 TRP A 31 VAL A 34 SITE 2 AC5 6 GDP A 302 ALF A 303 SITE 1 AC6 3 TYR A 58 SER A 59 TYR A 63 SITE 1 AC7 2 TYR B 96 TYR B 248 SITE 1 AC8 21 ASN B 11 SER B 12 GLY B 13 LYS B 14 SITE 2 AC8 21 THR B 15 SER B 16 VAL B 28 GLY B 29 SITE 3 AC8 21 ASN B 30 ASN B 113 MET B 114 ASP B 116 SITE 4 AC8 21 VAL B 117 SER B 142 ALA B 143 ALF B 303 SITE 5 AC8 21 MG B 304 K B 305 HOH B 412 HOH B 424 SITE 6 AC8 21 HOH B 426 SITE 1 AC9 13 PRO B 10 ASN B 11 LYS B 14 PRO B 32 SITE 2 AC9 13 GLY B 33 VAL B 34 THR B 35 GLY B 56 SITE 3 AC9 13 GDP B 302 MG B 304 K B 305 HOH B 426 SITE 4 AC9 13 HOH B 439 SITE 1 AD1 6 THR B 15 THR B 35 GDP B 302 ALF B 303 SITE 2 AD1 6 HOH B 424 HOH B 426 SITE 1 AD2 6 ASN B 11 GLY B 29 TRP B 31 VAL B 34 SITE 2 AD2 6 GDP B 302 ALF B 303 SITE 1 AD3 4 TYR B 58 SER B 59 TYR B 63 ALA B 67 CRYST1 48.619 72.402 157.957 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020568 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006331 0.00000