HEADER CELL ADHESION 12-APR-20 7BVX TITLE CRYSTAL STRUCTURE OF C-TERMINAL FRAGMENT OF PILUS ADHESIN SPAC FROM TITLE 2 LACTOBACILLUS RHAMNOSUS GG-IODIDE SOAKED COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILUS ASSEMBLY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: COMPND 6 MGSSHHHHHHSSGLVPRGSHMTNQQYGFQFQKKTTDGTDLSADQLKAMQFNLTQYSDNSF COMPND 7 QQASKTNAITSTDLQALAPGYYGIQEAAAPTGYQLDGTTYLFQLTSDGQWQYHGTKDNVT COMPND 8 SGSVINGQQTLNPVGDKSDDFTVTGDHQQILTLTKYDEPKPSMTLRVIKQDNQSQYLAGA COMPND 9 AFTLQPSAGEAETITSSATSEGQAFATKLVADGTYTMSETKAPDGYQSNPAKIAIQVATT COMPND 10 GKEATVTIDGEALKPGESKNGYTLAIDGSTITLQAINQPLAILPLEHHHHHH SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS RHAMNOSUS; SOURCE 3 ORGANISM_TAXID: 47715; SOURCE 4 ATCC: 53103; SOURCE 5 GENE: CCE29_04955; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PILUS ADHESIN, TIP PILIN, SPACBA PILUS, SORTASE, LACTOBACILLUS KEYWDS 2 RHAMNOSUS GG, PILI, FIMBRIA, PROBIOTICS, SPAC, SURFACE PROTEIN, CELL KEYWDS 3 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.KANT,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN REVDAT 6 29-NOV-23 7BVX 1 REMARK REVDAT 5 15-SEP-21 7BVX 1 REMARK LINK REVDAT 4 09-SEP-20 7BVX 1 AUTHOR REVDAT 3 26-AUG-20 7BVX 1 AUTHOR REVDAT 2 19-AUG-20 7BVX 1 JRNL REVDAT 1 29-JUL-20 7BVX 0 JRNL AUTH A.KANT,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN JRNL TITL CRYSTAL STRUCTURE OF LACTOBACILLAR SPAC REVEALS AN ATYPICAL JRNL TITL 2 FIVE-DOMAIN PILUS TIP ADHESIN: EXPOSING ITS JRNL TITL 3 SUBSTRATE-BINDING AND ASSEMBLY IN SPACBA PILI. JRNL REF J.STRUCT.BIOL. V. 211 07571 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 32653644 JRNL DOI 10.1016/J.JSB.2020.107571 REMARK 2 REMARK 2 RESOLUTION. 3.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.307 REMARK 3 R VALUE (WORKING SET) : 0.305 REMARK 3 FREE R VALUE : 0.346 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 295 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 438 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 145.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.31000 REMARK 3 B22 (A**2) : 3.38000 REMARK 3 B33 (A**2) : 5.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.624 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.440 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.209 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.874 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1716 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1338 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2357 ; 1.930 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3079 ; 1.624 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 9.272 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;43.011 ;25.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 174 ;22.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;11.852 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2088 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 327 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1039 ; 7.716 ;10.654 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1038 ; 7.714 ;10.654 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1297 ;11.839 ;15.977 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1298 ;11.836 ;15.976 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 677 ; 7.519 ;10.442 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 678 ; 7.513 ;10.441 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1061 ;11.271 ;15.631 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6697 ;17.446 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6696 ;17.447 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 597 A 732 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2195 -1.1877 -16.3809 REMARK 3 T TENSOR REMARK 3 T11: 0.4153 T22: 0.1476 REMARK 3 T33: 0.0706 T12: 0.1093 REMARK 3 T13: -0.1395 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 6.2598 L22: 3.3643 REMARK 3 L33: 6.4974 L12: 0.4956 REMARK 3 L13: -2.1040 L23: 1.1424 REMARK 3 S TENSOR REMARK 3 S11: 0.1554 S12: 0.3658 S13: -0.0126 REMARK 3 S21: -0.9430 S22: -0.4348 S23: 0.3534 REMARK 3 S31: 0.0831 S32: -0.8536 S33: 0.2795 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 733 A 856 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5311 -28.1925 -46.5978 REMARK 3 T TENSOR REMARK 3 T11: 0.8559 T22: 0.3940 REMARK 3 T33: 0.2187 T12: 0.1156 REMARK 3 T13: -0.0203 T23: -0.1926 REMARK 3 L TENSOR REMARK 3 L11: 4.3550 L22: 3.5720 REMARK 3 L33: 2.5066 L12: -2.2683 REMARK 3 L13: -1.9995 L23: 0.7390 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: -0.2860 S13: 0.2423 REMARK 3 S21: 0.3488 S22: 0.0244 S23: -0.5650 REMARK 3 S31: -0.7676 S32: -0.1590 S33: 0.0467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7BVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300015964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.42310 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6345 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.350 REMARK 200 RESOLUTION RANGE LOW (A) : 57.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6M3Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M LITHIUM SULFATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.02250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.45950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.12000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.02250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.45950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.12000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.02250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.45950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.12000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.02250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.45950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 573 REMARK 465 GLY A 574 REMARK 465 SER A 575 REMARK 465 SER A 576 REMARK 465 HIS A 577 REMARK 465 HIS A 578 REMARK 465 HIS A 579 REMARK 465 HIS A 580 REMARK 465 HIS A 581 REMARK 465 HIS A 582 REMARK 465 SER A 583 REMARK 465 SER A 584 REMARK 465 GLY A 585 REMARK 465 LEU A 586 REMARK 465 VAL A 587 REMARK 465 PRO A 588 REMARK 465 ARG A 589 REMARK 465 GLY A 590 REMARK 465 SER A 591 REMARK 465 HIS A 592 REMARK 465 MET A 593 REMARK 465 THR A 594 REMARK 465 ASN A 595 REMARK 465 GLN A 596 REMARK 465 GLY A 828 REMARK 465 GLU A 829 REMARK 465 LEU A 857 REMARK 465 GLU A 858 REMARK 465 HIS A 859 REMARK 465 HIS A 860 REMARK 465 HIS A 861 REMARK 465 HIS A 862 REMARK 465 HIS A 863 REMARK 465 HIS A 864 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 597 CG CD OE1 NE2 REMARK 470 THR A 606 OG1 CG2 REMARK 470 ASP A 608 CG OD1 OD2 REMARK 470 THR A 610 OG1 CG2 REMARK 470 ASP A 611 CG OD1 OD2 REMARK 470 LEU A 612 CG CD1 CD2 REMARK 470 ASP A 615 CG OD1 OD2 REMARK 470 GLN A 616 CG CD OE1 NE2 REMARK 470 LEU A 617 CG CD1 CD2 REMARK 470 LYS A 618 CG CD CE NZ REMARK 470 ASP A 629 CG OD1 OD2 REMARK 470 GLN A 634 CG CD OE1 NE2 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 SER A 643 OG REMARK 470 LEU A 646 CG CD1 CD2 REMARK 470 LEU A 649 CG CD1 CD2 REMARK 470 TYR A 665 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 667 CG CD1 CD2 REMARK 470 SER A 678 OG REMARK 470 ASP A 679 CG OD1 OD2 REMARK 470 GLN A 681 CG CD OE1 NE2 REMARK 470 TRP A 682 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 682 CZ3 CH2 REMARK 470 LYS A 688 CG CD CE NZ REMARK 470 ASN A 690 CG OD1 ND2 REMARK 470 VAL A 691 CG1 CG2 REMARK 470 THR A 692 OG1 CG2 REMARK 470 GLN A 700 CG CD OE1 NE2 REMARK 470 GLN A 701 CG CD OE1 NE2 REMARK 470 VAL A 706 CG1 CG2 REMARK 470 ASP A 708 CG OD1 OD2 REMARK 470 LYS A 709 CG CD CE NZ REMARK 470 ASP A 711 CG OD1 OD2 REMARK 470 ASP A 712 CG OD1 OD2 REMARK 470 PHE A 713 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 718 CG OD1 OD2 REMARK 470 GLN A 720 CG CD OE1 NE2 REMARK 470 LEU A 723 CG CD1 CD2 REMARK 470 LEU A 725 CG CD1 CD2 REMARK 470 THR A 726 OG1 CG2 REMARK 470 LYS A 727 CG CD CE NZ REMARK 470 ASP A 729 OD2 REMARK 470 GLU A 730 CG CD OE1 OE2 REMARK 470 LYS A 732 CG CD CE NZ REMARK 470 MET A 735 CG SD CE REMARK 470 GLN A 745 CG CD OE1 NE2 REMARK 470 GLN A 747 CG CD OE1 NE2 REMARK 470 PHE A 754 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 757 CG CD OE1 NE2 REMARK 470 GLU A 762 CG CD OE1 OE2 REMARK 470 THR A 771 OG1 CG2 REMARK 470 GLU A 773 CG CD OE1 OE2 REMARK 470 LYS A 780 CG CD CE NZ REMARK 470 LEU A 781 CG CD1 CD2 REMARK 470 VAL A 782 CG1 CG2 REMARK 470 ASP A 784 CG OD1 OD2 REMARK 470 THR A 788 OG1 CG2 REMARK 470 MET A 789 CG SD CE REMARK 470 GLU A 791 CG CD OE1 OE2 REMARK 470 THR A 792 OG1 CG2 REMARK 470 ASP A 796 CG OD1 OD2 REMARK 470 TYR A 798 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 804 CG CD CE NZ REMARK 470 ILE A 805 CG1 CG2 CD1 REMARK 470 ILE A 807 CG1 CG2 CD1 REMARK 470 GLN A 808 CG CD OE1 NE2 REMARK 470 VAL A 809 CG1 CG2 REMARK 470 THR A 811 OG1 CG2 REMARK 470 THR A 812 OG1 CG2 REMARK 470 LYS A 814 CG CD CE NZ REMARK 470 GLU A 815 CG CD OE1 OE2 REMARK 470 THR A 819 OG1 CG2 REMARK 470 ILE A 820 CG1 CG2 CD1 REMARK 470 ASP A 821 CG OD1 OD2 REMARK 470 GLU A 823 CG CD OE1 OE2 REMARK 470 LEU A 825 CG CD1 CD2 REMARK 470 LYS A 826 CG CD CE NZ REMARK 470 LYS A 831 CG CD CE NZ REMARK 470 LEU A 836 CG CD1 CD2 REMARK 470 ILE A 843 CG1 CG2 CD1 REMARK 470 LEU A 852 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 604 CG ASP A 729 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 610 109.65 -53.09 REMARK 500 GLN A 616 -72.45 -67.93 REMARK 500 LEU A 617 0.79 -61.51 REMARK 500 ALA A 648 134.23 -32.48 REMARK 500 GLN A 683 -149.52 -108.17 REMARK 500 TYR A 684 127.44 -178.18 REMARK 500 ASP A 796 -110.31 49.18 REMARK 500 ASP A 821 -109.72 47.20 REMARK 500 ASP A 839 68.49 -118.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 907 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6M3Y RELATED DB: PDB REMARK 900 6M3Y CONTAINS FULL LENGTH SPAC FROM LACTOBACILLUS RHAMNOSUS GG. DBREF1 7BVX A 594 856 UNP A0A1Y0DVK9_LACRH DBREF2 7BVX A A0A1Y0DVK9 594 856 SEQADV 7BVX MET A 573 UNP A0A1Y0DVK INITIATING METHIONINE SEQADV 7BVX GLY A 574 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX SER A 575 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX SER A 576 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 577 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 578 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 579 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 580 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 581 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 582 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX SER A 583 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX SER A 584 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX GLY A 585 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX LEU A 586 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX VAL A 587 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX PRO A 588 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX ARG A 589 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX GLY A 590 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX SER A 591 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 592 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX MET A 593 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX LEU A 857 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX GLU A 858 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 859 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 860 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 861 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 862 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 863 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 7BVX HIS A 864 UNP A0A1Y0DVK EXPRESSION TAG SEQRES 1 A 292 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 292 LEU VAL PRO ARG GLY SER HIS MET THR ASN GLN GLN TYR SEQRES 3 A 292 GLY PHE GLN PHE GLN LYS LYS THR THR ASP GLY THR ASP SEQRES 4 A 292 LEU SER ALA ASP GLN LEU LYS ALA MET GLN PHE ASN LEU SEQRES 5 A 292 THR GLN TYR SER ASP ASN SER PHE GLN GLN ALA SER LYS SEQRES 6 A 292 THR ASN ALA ILE THR SER THR ASP LEU GLN ALA LEU ALA SEQRES 7 A 292 PRO GLY TYR TYR GLY ILE GLN GLU ALA ALA ALA PRO THR SEQRES 8 A 292 GLY TYR GLN LEU ASP GLY THR THR TYR LEU PHE GLN LEU SEQRES 9 A 292 THR SER ASP GLY GLN TRP GLN TYR HIS GLY THR LYS ASP SEQRES 10 A 292 ASN VAL THR SER GLY SER VAL ILE ASN GLY GLN GLN THR SEQRES 11 A 292 LEU ASN PRO VAL GLY ASP LYS SER ASP ASP PHE THR VAL SEQRES 12 A 292 THR GLY ASP HIS GLN GLN ILE LEU THR LEU THR LYS TYR SEQRES 13 A 292 ASP GLU PRO LYS PRO SER MET THR LEU ARG VAL ILE LYS SEQRES 14 A 292 GLN ASP ASN GLN SER GLN TYR LEU ALA GLY ALA ALA PHE SEQRES 15 A 292 THR LEU GLN PRO SER ALA GLY GLU ALA GLU THR ILE THR SEQRES 16 A 292 SER SER ALA THR SER GLU GLY GLN ALA PHE ALA THR LYS SEQRES 17 A 292 LEU VAL ALA ASP GLY THR TYR THR MET SER GLU THR LYS SEQRES 18 A 292 ALA PRO ASP GLY TYR GLN SER ASN PRO ALA LYS ILE ALA SEQRES 19 A 292 ILE GLN VAL ALA THR THR GLY LYS GLU ALA THR VAL THR SEQRES 20 A 292 ILE ASP GLY GLU ALA LEU LYS PRO GLY GLU SER LYS ASN SEQRES 21 A 292 GLY TYR THR LEU ALA ILE ASP GLY SER THR ILE THR LEU SEQRES 22 A 292 GLN ALA ILE ASN GLN PRO LEU ALA ILE LEU PRO LEU GLU SEQRES 23 A 292 HIS HIS HIS HIS HIS HIS HET IOD A 901 1 HET IOD A 902 1 HET IOD A 903 1 HET IOD A 904 1 HET IOD A 906 1 HET IOD A 907 1 HETNAM IOD IODIDE ION FORMUL 2 IOD 6(I 1-) HELIX 1 AA1 ASP A 615 MET A 620 1 6 SHEET 1 AA1 3 LYS A 604 THR A 606 0 SHEET 2 AA1 3 ILE A 722 PRO A 731 1 O ASP A 729 N LYS A 605 SHEET 3 AA1 3 TYR A 665 GLN A 666 -1 N GLN A 666 O GLU A 730 SHEET 1 AA2 5 GLN A 647 ALA A 648 0 SHEET 2 AA2 5 GLY A 599 GLN A 601 -1 N PHE A 600 O GLN A 647 SHEET 3 AA2 5 ILE A 722 PRO A 731 1 O LEU A 725 N GLN A 601 SHEET 4 AA2 5 SER A 710 THR A 716 -1 N THR A 714 O THR A 724 SHEET 5 AA2 5 GLN A 700 PRO A 705 -1 N LEU A 703 O ASP A 711 SHEET 1 AA3 6 ALA A 635 ALA A 640 0 SHEET 2 AA3 6 GLN A 621 TYR A 627 -1 N GLN A 626 O LYS A 637 SHEET 3 AA3 6 GLY A 652 ALA A 660 -1 O ALA A 660 N GLN A 621 SHEET 4 AA3 6 THR A 671 LEU A 676 -1 O PHE A 674 N TYR A 654 SHEET 5 AA3 6 GLY A 686 THR A 687 -1 O GLY A 686 N LEU A 673 SHEET 6 AA3 6 ASN A 690 VAL A 691 -1 O ASN A 690 N THR A 687 SHEET 1 AA4 4 GLN A 775 ALA A 776 0 SHEET 2 AA4 4 THR A 736 GLN A 742 -1 N VAL A 739 O GLN A 775 SHEET 3 AA4 4 THR A 842 ILE A 848 1 O LEU A 845 N ARG A 738 SHEET 4 AA4 4 TYR A 834 ASP A 839 -1 N ALA A 837 O THR A 844 SHEET 1 AA5 5 GLU A 764 THR A 767 0 SHEET 2 AA5 5 ALA A 753 PRO A 758 -1 N LEU A 756 O GLU A 764 SHEET 3 AA5 5 THR A 786 SER A 790 -1 O THR A 788 N GLN A 757 SHEET 4 AA5 5 ILE A 805 GLN A 808 -1 O ILE A 805 N MET A 789 SHEET 5 AA5 5 THR A 817 VAL A 818 -1 O THR A 817 N GLN A 808 LINK NZ LYS A 741 CG ASN A 849 1555 1555 1.28 SITE 1 AC1 4 SER A 636 LYS A 637 THR A 638 ALA A 640 SITE 1 AC2 1 GLN A 666 SITE 1 AC3 1 HIS A 719 SITE 1 AC4 1 ASP A 615 CRYST1 60.045 114.919 122.240 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016654 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008181 0.00000