HEADER HYDROLASE 19-APR-20 7BXD TITLE CRYSTAL STRUCTURE OF CA_00815 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDSL-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CA_00815; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COLLINSELLA AEROFACIENS ATCC 25986; SOURCE 3 ORGANISM_TAXID: 411903; SOURCE 4 GENE: COLAER_00815; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYL-HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.P.FAN REVDAT 2 29-NOV-23 7BXD 1 REMARK REVDAT 1 21-APR-21 7BXD 0 JRNL AUTH C.P.FAN JRNL TITL CRYSTAL STRUCTURE OF CA_00815 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 79899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.470 REMARK 3 FREE R VALUE TEST SET COUNT : 1974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8700 - 2.8400 1.00 5760 143 0.1478 0.1541 REMARK 3 2 2.8400 - 2.2500 1.00 5641 142 0.1473 0.1593 REMARK 3 3 2.2500 - 1.9700 1.00 5557 140 0.1324 0.1434 REMARK 3 4 1.9700 - 1.7900 1.00 5584 147 0.1275 0.1374 REMARK 3 5 1.7900 - 1.6600 1.00 5585 140 0.1231 0.1505 REMARK 3 6 1.6600 - 1.5600 1.00 5542 139 0.1126 0.1236 REMARK 3 7 1.5600 - 1.4800 1.00 5530 142 0.1137 0.1409 REMARK 3 8 1.4800 - 1.4200 1.00 5584 139 0.1205 0.1453 REMARK 3 9 1.4200 - 1.3600 1.00 5501 141 0.1342 0.1608 REMARK 3 10 1.3600 - 1.3200 1.00 5559 145 0.1480 0.1874 REMARK 3 11 1.3200 - 1.2800 1.00 5514 143 0.1579 0.1901 REMARK 3 12 1.2800 - 1.2400 1.00 5572 137 0.1771 0.1934 REMARK 3 13 1.2400 - 1.2100 1.00 5485 140 0.2002 0.2357 REMARK 3 14 1.2100 - 1.1800 0.99 5511 136 0.2472 0.2796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.113 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.039 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1700 REMARK 3 ANGLE : 1.077 2312 REMARK 3 CHIRALITY : 0.087 255 REMARK 3 PLANARITY : 0.009 306 REMARK 3 DIHEDRAL : 3.441 958 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79909 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 46.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 38.90 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 32.20 REMARK 200 R MERGE FOR SHELL (I) : 2.93100 REMARK 200 R SYM FOR SHELL (I) : 2.93100 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3DCI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KCL, 0.1M PH 6.0, 20% PEG 6000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.71000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 56.71000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 56.71000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 56.71000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 56.71000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 56.71000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 56.71000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 56.71000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 56.71000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 56.71000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 56.71000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 56.71000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 56.71000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 56.71000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 56.71000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 56.71000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 56.71000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 56.71000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 56.71000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 56.71000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 56.71000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 56.71000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 56.71000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 56.71000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 56.71000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 56.71000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 538 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 574 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ARG A 3 REMARK 465 ILE A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 PHE A 8 REMARK 465 LEU A 9 REMARK 465 TYR A 10 REMARK 465 ASP A 11 REMARK 465 ARG A 12 REMARK 465 ARG A 13 REMARK 465 TRP A 14 REMARK 465 ALA A 15 REMARK 465 ASP A 16 REMARK 465 GLU A 17 REMARK 465 GLU A 18 REMARK 465 LYS A 19 REMARK 465 ILE A 20 REMARK 465 MET A 21 REMARK 465 GLU A 22 REMARK 465 THR A 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 329 O HOH A 368 2.02 REMARK 500 O HOH A 377 O HOH A 454 2.10 REMARK 500 O HOH A 490 O HOH A 503 2.14 REMARK 500 O HOH A 486 O HOH A 515 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 535 O HOH A 556 18555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 36 -148.20 -109.11 REMARK 500 PHE A 70 53.82 -117.34 REMARK 500 GLN A 200 26.44 -141.33 REMARK 500 LEU A 219 -52.55 -143.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 577 DISTANCE = 6.07 ANGSTROMS DBREF 7BXD A 1 242 UNP A4E8S4 A4E8S4_9ACTN 1 242 SEQRES 1 A 242 MET LEU ARG ILE ASN GLY THR PHE LEU TYR ASP ARG ARG SEQRES 2 A 242 TRP ALA ASP GLU GLU LYS ILE MET GLU THR LYS SER LEU SEQRES 3 A 242 SER GLU SER THR ILE CYS CYS PHE GLY ASP SER THR THR SEQRES 4 A 242 TRP GLY ASP ASN GLY CYS GLY GLY GLY GLY ASN ASP ILE SEQRES 5 A 242 SER TRP THR SER HIS LEU GLY ALA LEU LEU GLY GLY ALA SEQRES 6 A 242 VAL VAL GLU ASN PHE GLY ILE LYS GLY SER ARG ILE ALA SEQRES 7 A 242 ILE LYS ALA ASP ARG THR ASP SER PHE VAL GLU ARG LEU SEQRES 8 A 242 ASP GLY ILE ASP ASP ALA ALA ASP VAL TYR VAL VAL PHE SEQRES 9 A 242 GLY GLY VAL ASN ASP PHE SER ARG ASN VAL PRO LEU GLY SEQRES 10 A 242 GLU LEU GLY SER THR ASP ALA HIS GLU PHE TYR GLY ALA SEQRES 11 A 242 VAL ASP TYR LEU ILE ARG THR ILE THR ALA ARG SER PRO SEQRES 12 A 242 GLN ALA LYS LEU VAL PHE MET THR PRO CYS LYS THR SER SEQRES 13 A 242 GLY LYS HIS GLU LYS ASP ILE PRO ALA SER ASP GLU LEU SEQRES 14 A 242 ASN HIS LEU GLY LEU THR GLN ALA ALA TYR VAL ARG ALA SEQRES 15 A 242 MET LEU GLU VAL CYS ASP ARG TYR SER VAL PRO VAL ILE SEQRES 16 A 242 ASP LEU TYR ALA GLN SER GLY ILE SER PRO PHE LEU PRO SEQRES 17 A 242 GLU HIS ARG GLU LEU TYR MET PRO ASP GLY LEU HIS TYR SEQRES 18 A 242 SER PRO ALA GLY TYR GLU ARG LEU ALA HIS ARG ILE ALA SEQRES 19 A 242 ALA GLY LEU THR ALA VAL CYS ARG FORMUL 2 HOH *277(H2 O) HELIX 1 AA1 SER A 25 GLU A 28 5 4 HELIX 2 AA2 ASP A 36 GLY A 41 1 6 HELIX 3 AA3 GLY A 49 SER A 53 5 5 HELIX 4 AA4 TRP A 54 LEU A 62 1 9 HELIX 5 AA5 SER A 86 LEU A 91 1 6 HELIX 6 AA6 ASP A 92 ILE A 94 5 3 HELIX 7 AA7 GLY A 106 ARG A 112 1 7 HELIX 8 AA8 GLU A 126 SER A 142 1 17 HELIX 9 AA9 LYS A 158 ASP A 162 5 5 HELIX 10 AB1 THR A 175 TYR A 190 1 16 HELIX 11 AB2 ASP A 196 SER A 201 1 6 HELIX 12 AB3 LEU A 207 TYR A 214 1 8 HELIX 13 AB4 SER A 222 CYS A 241 1 20 SHEET 1 AA1 5 VAL A 66 GLY A 71 0 SHEET 2 AA1 5 THR A 30 GLY A 35 1 N ILE A 31 O VAL A 66 SHEET 3 AA1 5 VAL A 100 PHE A 104 1 O VAL A 100 N CYS A 32 SHEET 4 AA1 5 LYS A 146 MET A 150 1 O MET A 150 N VAL A 103 SHEET 5 AA1 5 VAL A 194 ILE A 195 1 O ILE A 195 N PHE A 149 CRYST1 113.420 113.420 113.420 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008817 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008817 0.00000